Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47117 * 2 1 4 4 C 1.53000 * 109.47153 * 119.99880 * 2 1 3 5 5 N 1.46494 * 109.47284 * 174.99961 * 4 2 1 6 6 C 1.34784 * 120.00098 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99704 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00153 * 180.02562 * 6 5 4 9 9 S 1.80997 * 109.46854 * 179.97438 * 8 6 5 10 10 C 1.76209 * 99.99606 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00064 * 359.72498 * 10 9 8 12 12 C 1.38803 * 119.99742 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00011 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99677 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46900 * 90.00750 * 14 12 10 16 16 H 1.48502 * 109.46845 * 210.00289 * 14 12 10 17 17 H 1.48492 * 109.47488 * 330.00507 * 14 12 10 18 18 N 1.46505 * 109.47477 * 240.00035 * 2 1 3 19 19 C 1.46498 * 119.99887 * 293.95467 * 18 2 1 20 20 C 1.34779 * 119.99917 * 113.95558 * 18 2 1 21 21 O 1.21276 * 119.99679 * 184.77047 * 20 18 2 22 22 C 1.50698 * 119.99865 * 4.77210 * 20 18 2 23 23 C 1.52998 * 110.34584 * 293.47848 * 22 20 18 24 24 C 1.51101 * 110.38957 * 55.76852 * 22 20 18 25 25 C 1.30535 * 111.10182 * 102.37190 * 24 22 20 26 26 C 1.51099 * 111.10456 * 0.02562 * 25 24 22 27 27 C 1.54634 * 110.38279 * 171.07299 * 22 20 18 28 28 H 1.08998 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47419 * 300.00210 * 1 2 3 30 30 H 1.09004 * 109.46910 * 60.00214 * 1 2 3 31 31 H 1.09003 * 109.46715 * 55.00470 * 4 2 1 32 32 H 1.08999 * 109.47228 * 295.00359 * 4 2 1 33 33 H 0.97003 * 120.00155 * 0.02562 * 5 4 2 34 34 H 1.09007 * 109.46823 * 59.99733 * 8 6 5 35 35 H 1.08999 * 109.47106 * 300.00018 * 8 6 5 36 36 H 0.96998 * 119.99835 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.47040 * 95.04524 * 19 18 2 38 38 H 1.09000 * 109.47159 * 215.04352 * 19 18 2 39 39 H 1.09000 * 109.47247 * 335.04513 * 19 18 2 40 40 H 1.09002 * 109.46898 * 64.23730 * 23 22 20 41 41 H 1.09003 * 109.47420 * 184.23302 * 23 22 20 42 42 H 1.09000 * 109.47617 * 304.23746 * 23 22 20 43 43 H 1.07992 * 124.45046 * 282.39894 * 24 22 20 44 44 H 1.07997 * 124.44364 * 180.02562 * 25 24 22 45 45 H 1.08999 * 110.38781 * 135.24867 * 26 25 24 46 46 H 1.08999 * 110.38835 * 257.51194 * 26 25 24 47 47 H 1.08996 * 111.03892 * 23.85496 * 27 22 20 48 48 H 1.09005 * 111.03842 * 147.78704 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1908 7 8 3.5698 -1.8841 3.1395 8 6 5.6749 -1.5369 2.1308 9 16 6.2781 -2.3902 3.6086 10 6 8.0101 -2.3760 3.2845 11 1 8.3860 -1.9265 2.3773 12 6 8.8907 -2.9471 4.1927 13 7 8.4321 -3.4998 5.2958 14 14 10.7268 -2.9327 3.8488 15 1 11.3276 -1.7004 4.4195 16 1 11.3564 -4.1247 4.4717 17 1 10.9559 -2.9615 2.3819 18 7 2.0184 -0.6906 -1.1962 19 6 1.7770 -2.1259 -1.3632 20 6 2.6899 -0.0055 -2.1429 21 8 3.0186 -0.5568 -3.1719 22 6 3.0322 1.4455 -1.9227 23 6 1.7589 2.2929 -1.8866 24 6 3.8129 1.6134 -0.6399 25 6 5.0855 1.7739 -0.8818 26 6 5.3656 1.7404 -2.3662 27 6 3.9855 1.9482 -3.0316 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1370 33 1 3.9824 -0.4622 0.4320 34 1 6.1093 -0.5381 2.0855 35 1 5.9637 -2.0991 1.2428 36 1 9.0475 -3.8985 5.9306 37 1 0.8785 -2.2759 -1.9619 38 1 2.6294 -2.5815 -1.8670 39 1 1.6433 -2.5881 -0.3852 40 1 1.1530 2.0018 -1.0285 41 1 2.0258 3.3464 -1.8023 42 1 1.1906 2.1343 -2.8031 43 1 3.3754 1.6017 0.3474 44 1 5.8392 1.9124 -0.1208 45 1 6.0461 2.5459 -2.6425 46 1 5.7847 0.7756 -2.6519 47 1 3.8905 1.3432 -3.9333 48 1 3.8112 3.0020 -3.2494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734747410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = -42.393395 kcal Electronic energy + Delta-G solvation = -28714.543954 eV Core-core repulsion = 24896.663157 eV Total energy + Delta-G solvation = -3817.880798 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.45582 -39.21684 -38.04514 -37.10293 -33.94748 -32.43707 -32.17081 -31.55174 -29.45110 -29.41353 -27.41161 -26.08410 -25.39648 -25.16901 -22.81027 -21.33836 -20.41946 -19.69612 -19.20086 -17.87305 -16.96913 -16.70549 -16.30711 -15.94250 -15.75312 -15.48807 -15.20489 -14.81114 -14.76717 -14.17499 -13.90047 -13.70620 -13.42501 -13.31766 -13.10998 -12.98409 -12.80589 -12.64729 -12.54776 -12.34240 -12.21123 -12.13698 -11.90618 -11.80917 -11.55529 -11.45630 -11.18908 -11.07145 -11.03055 -10.88867 -10.76909 -10.23878 -9.82904 -9.46310 -9.18331 -9.07943 -8.98753 -8.93055 -8.25362 -6.51189 -6.22621 -3.93212 1.79283 2.40571 2.65179 3.02526 3.06101 3.21831 3.27531 3.31893 3.69107 4.08186 4.14161 4.19667 4.30712 4.31760 4.57023 4.63646 4.75212 4.86988 5.03193 5.08404 5.12319 5.12734 5.18197 5.24375 5.25662 5.30312 5.34769 5.37061 5.48277 5.52186 5.53382 5.61856 5.64803 5.67183 5.75075 5.79209 5.84135 5.86878 5.96992 6.11922 6.15708 6.21260 6.48599 6.55182 7.07068 7.58861 7.65164 7.90677 8.34481 8.56757 9.22908 10.84810 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.003113 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.488049 B = 8992.022290 C =10156.370538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 H 0.119 0.881 4 C 0.107 3.893 5 N -0.738 5.738 6 C 0.532 3.468 7 O -0.517 6.517 8 C -0.153 4.153 9 S -0.058 6.058 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.604 5.604 19 C 0.083 3.917 20 C 0.529 3.471 21 O -0.533 6.533 22 C -0.058 4.058 23 C -0.147 4.147 24 C -0.192 4.192 25 C -0.130 4.130 26 C -0.108 4.108 27 C -0.107 4.107 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.398 0.602 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.672 13.452 -15.910 26.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.003 4.003 3 H 0.137 0.863 4 C -0.018 4.018 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.391 6.391 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.744 3.256 15 H -0.202 1.202 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.337 5.337 19 C -0.059 4.059 20 C 0.317 3.683 21 O -0.409 6.409 22 C -0.061 4.061 23 C -0.204 4.204 24 C -0.210 4.210 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.145 4.145 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.154 0.846 44 H 0.152 0.848 45 H 0.095 0.905 46 H 0.100 0.900 47 H 0.110 0.890 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.478 12.259 -14.719 25.268 hybrid contribution 2.051 0.579 -1.441 2.573 sum -14.427 12.838 -16.161 25.182 Atomic orbital electron populations 1.22152 0.93609 1.03433 1.02988 1.22074 0.95471 0.98668 0.84134 0.86337 1.21679 0.81531 1.01581 0.97000 1.46119 1.06716 1.62035 1.24593 1.20314 0.89533 0.76726 0.81638 1.90700 1.69858 1.45931 1.32605 1.23524 0.93572 1.05585 1.07680 1.85369 1.04600 1.73148 1.20038 1.22868 0.91515 1.44465 1.09550 0.90953 1.24983 0.99572 0.94479 0.94474 1.70014 1.35396 1.35466 1.09412 0.86177 0.82935 0.77865 0.78597 1.20247 1.20734 1.19678 1.47830 1.55907 1.09608 1.20375 1.21652 1.01910 0.80001 1.02325 1.20430 0.76712 0.88367 0.82776 1.90678 1.53419 1.70236 1.26599 1.20606 0.97491 0.92214 0.95759 1.22074 0.95452 0.99978 1.02878 1.23299 0.95662 1.04835 0.97201 1.23590 0.97008 0.96383 0.97841 1.21467 0.97834 1.02804 0.92382 1.22492 0.92852 1.01463 0.97655 0.91563 0.90668 0.91558 0.90960 0.90137 0.76611 0.89377 0.89417 0.92180 0.92712 0.90795 0.90601 0.91109 0.90972 0.91862 0.84554 0.84782 0.90467 0.89964 0.89011 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 8.75 37.16 0.33 -0.62 16 2 C 0.10 0.77 1.42 -67.93 -0.10 0.68 16 3 H 0.12 0.82 2.35 -51.93 -0.12 0.69 16 4 C 0.11 1.12 4.71 -4.05 -0.02 1.10 16 5 N -0.74 -9.75 4.95 -60.30 -0.30 -10.05 16 6 C 0.53 9.78 7.85 -10.98 -0.09 9.69 16 7 O -0.52 -11.41 15.86 5.56 0.09 -11.32 16 8 C -0.15 -3.11 6.16 36.01 0.22 -2.88 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 13 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 14 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 N -0.60 -5.79 2.20 -173.93 -0.38 -6.17 16 19 C 0.08 0.82 9.61 59.85 0.57 1.39 16 20 C 0.53 5.89 6.51 -10.99 -0.07 5.82 16 21 O -0.53 -7.75 15.16 5.56 0.08 -7.67 16 22 C -0.06 -0.50 0.56 -155.76 -0.09 -0.58 16 23 C -0.15 -0.94 8.22 37.16 0.31 -0.63 16 24 C -0.19 -1.64 5.83 -35.70 -0.21 -1.85 16 25 C -0.13 -1.17 10.78 -35.70 -0.38 -1.56 16 26 C -0.11 -0.96 6.81 -26.84 -0.18 -1.14 16 27 C -0.11 -0.92 6.10 -25.02 -0.15 -1.08 16 28 H 0.07 0.40 7.83 -51.93 -0.41 -0.01 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.36 7.58 -51.93 -0.39 -0.04 16 31 H 0.07 0.81 6.70 -51.93 -0.35 0.46 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.40 4.82 5.69 -40.82 -0.23 4.59 16 34 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 35 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.85 7.65 -51.93 -0.40 0.45 16 39 H 0.08 0.71 6.23 -51.93 -0.32 0.38 16 40 H 0.07 0.38 4.30 -51.93 -0.22 0.16 16 41 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.14 1.10 5.71 -52.49 -0.30 0.80 16 44 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.09 0.93 6.86 -51.93 -0.36 0.58 16 48 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 LS Contribution 387.24 15.07 5.84 5.84 Total: -1.00 -35.34 387.24 -8.12 -43.45 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -7.28 Total: 3.28 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 0.34 Total: -4.60 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 0.05 Total: -41.59 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: 0.17 Total: -18.99 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.34 -8.12 -43.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734747410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.058 kcal (2) G-P(sol) polarization free energy of solvation -35.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds