Wall clock time and date at job start Sat Apr 11 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47117 * 2 1 4 4 C 1.53000 * 109.47153 * 119.99880 * 2 1 3 5 5 N 1.46494 * 109.47284 * 174.99961 * 4 2 1 6 6 C 1.34784 * 120.00098 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99704 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00153 * 180.02562 * 6 5 4 9 9 S 1.80997 * 109.46854 * 179.97438 * 8 6 5 10 10 C 1.76209 * 99.99606 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00064 * 359.72498 * 10 9 8 12 12 C 1.38803 * 119.99742 * 179.97438 * 10 9 8 13 13 N 1.31628 * 120.00011 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99677 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46900 * 90.00750 * 14 12 10 16 16 H 1.48502 * 109.46845 * 210.00289 * 14 12 10 17 17 H 1.48492 * 109.47488 * 330.00507 * 14 12 10 18 18 N 1.46505 * 109.47477 * 240.00035 * 2 1 3 19 19 C 1.46498 * 119.99887 * 293.95467 * 18 2 1 20 20 C 1.34779 * 119.99917 * 113.95558 * 18 2 1 21 21 O 1.21276 * 119.99679 * 184.77047 * 20 18 2 22 22 C 1.50698 * 119.99865 * 4.77210 * 20 18 2 23 23 C 1.52998 * 110.34584 * 293.47848 * 22 20 18 24 24 C 1.51101 * 110.38957 * 55.76852 * 22 20 18 25 25 C 1.30535 * 111.10182 * 102.37190 * 24 22 20 26 26 C 1.51099 * 111.10456 * 0.02562 * 25 24 22 27 27 C 1.54634 * 110.38279 * 171.07299 * 22 20 18 28 28 H 1.08998 * 109.47274 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47419 * 300.00210 * 1 2 3 30 30 H 1.09004 * 109.46910 * 60.00214 * 1 2 3 31 31 H 1.09003 * 109.46715 * 55.00470 * 4 2 1 32 32 H 1.08999 * 109.47228 * 295.00359 * 4 2 1 33 33 H 0.97003 * 120.00155 * 0.02562 * 5 4 2 34 34 H 1.09007 * 109.46823 * 59.99733 * 8 6 5 35 35 H 1.08999 * 109.47106 * 300.00018 * 8 6 5 36 36 H 0.96998 * 119.99835 * 180.02562 * 13 12 10 37 37 H 1.09003 * 109.47040 * 95.04524 * 19 18 2 38 38 H 1.09000 * 109.47159 * 215.04352 * 19 18 2 39 39 H 1.09000 * 109.47247 * 335.04513 * 19 18 2 40 40 H 1.09002 * 109.46898 * 64.23730 * 23 22 20 41 41 H 1.09003 * 109.47420 * 184.23302 * 23 22 20 42 42 H 1.09000 * 109.47617 * 304.23746 * 23 22 20 43 43 H 1.07992 * 124.45046 * 282.39894 * 24 22 20 44 44 H 1.07997 * 124.44364 * 180.02562 * 25 24 22 45 45 H 1.08999 * 110.38781 * 135.24867 * 26 25 24 46 46 H 1.08999 * 110.38835 * 257.51194 * 26 25 24 47 47 H 1.08996 * 111.03892 * 23.85496 * 27 22 20 48 48 H 1.09005 * 111.03842 * 147.78704 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8264 1.1906 6 6 4.1730 -1.4292 2.1908 7 8 3.5698 -1.8841 3.1395 8 6 5.6749 -1.5369 2.1308 9 16 6.2781 -2.3902 3.6086 10 6 8.0101 -2.3760 3.2845 11 1 8.3860 -1.9265 2.3773 12 6 8.8907 -2.9471 4.1927 13 7 8.4321 -3.4998 5.2958 14 14 10.7268 -2.9327 3.8488 15 1 11.3276 -1.7004 4.4195 16 1 11.3564 -4.1247 4.4717 17 1 10.9559 -2.9615 2.3819 18 7 2.0184 -0.6906 -1.1962 19 6 1.7770 -2.1259 -1.3632 20 6 2.6899 -0.0055 -2.1429 21 8 3.0186 -0.5568 -3.1719 22 6 3.0322 1.4455 -1.9227 23 6 1.7589 2.2929 -1.8866 24 6 3.8129 1.6134 -0.6399 25 6 5.0855 1.7739 -0.8818 26 6 5.3656 1.7404 -2.3662 27 6 3.9855 1.9482 -3.0316 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1370 33 1 3.9824 -0.4622 0.4320 34 1 6.1093 -0.5381 2.0855 35 1 5.9637 -2.0991 1.2428 36 1 9.0475 -3.8985 5.9306 37 1 0.8785 -2.2759 -1.9619 38 1 2.6294 -2.5815 -1.8670 39 1 1.6433 -2.5881 -0.3852 40 1 1.1530 2.0018 -1.0285 41 1 2.0258 3.3464 -1.8023 42 1 1.1906 2.1343 -2.8031 43 1 3.3754 1.6017 0.3474 44 1 5.8392 1.9124 -0.1208 45 1 6.0461 2.5459 -2.6425 46 1 5.7847 0.7756 -2.6519 47 1 3.8905 1.3432 -3.9333 48 1 3.8112 3.0020 -3.2494 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734747410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:34 Heat of formation + Delta-G solvation = -65.180699 kcal Electronic energy + Delta-G solvation = -28715.532086 eV Core-core repulsion = 24896.663157 eV Total energy + Delta-G solvation = -3818.868929 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.25082 -40.57248 -38.82369 -38.07538 -35.16185 -34.59509 -32.83836 -32.41273 -30.84480 -30.11881 -28.17136 -27.75314 -26.84605 -25.78051 -23.60865 -22.06638 -21.79337 -20.42752 -20.09860 -19.70752 -17.91689 -17.77240 -17.56565 -16.90611 -16.87483 -16.76230 -16.47046 -16.08506 -15.85285 -15.78687 -14.97219 -14.60191 -14.47959 -14.37331 -14.28245 -13.94584 -13.72375 -13.56424 -13.29995 -13.24040 -13.18011 -13.02402 -12.90919 -12.88933 -12.79158 -12.65063 -12.52619 -12.26354 -12.15525 -11.82891 -11.74601 -11.53355 -11.15381 -11.07621 -10.99442 -10.30684 -10.16581 -9.91391 -9.81319 -8.67663 -8.36036 -6.13823 1.07248 1.25077 1.41179 1.44997 1.55394 1.56919 1.57518 1.88628 2.24903 2.29010 2.98225 3.29812 3.38908 3.44935 3.55492 3.64068 3.84219 3.97085 4.01608 4.13694 4.20374 4.23486 4.33298 4.43016 4.45353 4.52932 4.55482 4.56443 4.67300 4.72985 4.74453 4.81301 4.88337 4.91587 4.93142 5.01797 5.11398 5.17939 5.26792 5.33113 5.34643 5.40629 5.45965 5.51492 5.80504 6.18485 6.27389 6.37519 7.05561 7.06686 7.16522 8.73101 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013931 B = 0.003113 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.488049 B = 8992.022290 C =10156.370538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.107 3.893 3 H 0.133 0.867 4 C 0.102 3.898 5 N -0.715 5.715 6 C 0.536 3.464 7 O -0.557 6.557 8 C -0.132 4.132 9 S -0.140 6.140 10 C -0.549 4.549 11 H 0.080 0.920 12 C 0.016 3.984 13 N -0.909 5.909 14 Si 0.996 3.004 15 H -0.266 1.266 16 H -0.277 1.277 17 H -0.261 1.261 18 N -0.602 5.602 19 C 0.083 3.917 20 C 0.523 3.477 21 O -0.574 6.574 22 C -0.055 4.055 23 C -0.145 4.145 24 C -0.190 4.190 25 C -0.139 4.139 26 C -0.110 4.110 27 C -0.107 4.107 28 H 0.064 0.936 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.405 0.595 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.272 0.728 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.146 0.854 44 H 0.139 0.861 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.075 15.523 -16.849 27.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.004 3.996 3 H 0.150 0.850 4 C -0.022 4.022 5 N -0.370 5.370 6 C 0.321 3.679 7 O -0.435 6.435 8 C -0.283 4.283 9 S 0.087 5.913 10 C -0.697 4.697 11 H 0.098 0.902 12 C -0.189 4.189 13 N -0.546 5.546 14 Si 0.818 3.182 15 H -0.191 1.191 16 H -0.202 1.202 17 H -0.185 1.185 18 N -0.334 5.334 19 C -0.060 4.060 20 C 0.313 3.687 21 O -0.454 6.454 22 C -0.059 4.059 23 C -0.201 4.201 24 C -0.208 4.208 25 C -0.157 4.157 26 C -0.147 4.147 27 C -0.144 4.144 28 H 0.083 0.917 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.243 0.757 34 H 0.127 0.873 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.163 0.837 44 H 0.156 0.844 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.917 14.363 -15.682 27.174 hybrid contribution 2.079 -0.046 -1.227 2.414 sum -14.839 14.317 -16.909 26.666 Atomic orbital electron populations 1.22159 0.91410 1.03868 1.04422 1.22199 0.97013 0.98485 0.81862 0.84951 1.21958 0.79189 1.02062 0.98975 1.45913 1.08070 1.59901 1.23069 1.19951 0.88700 0.77038 0.82163 1.90692 1.70229 1.48128 1.34484 1.23374 0.95250 1.05653 1.04072 1.85482 1.05607 1.75059 1.25132 1.23199 0.91844 1.44664 1.09983 0.90200 1.26080 1.05058 0.93702 0.94021 1.70168 1.37371 1.36449 1.10594 0.84991 0.76035 0.78245 0.78961 1.19077 1.20236 1.18489 1.47939 1.55369 1.09516 1.20579 1.21636 1.01562 0.80263 1.02526 1.20947 0.76116 0.89353 0.82331 1.90662 1.55059 1.71278 1.28375 1.20637 0.98701 0.90819 0.95699 1.22101 0.94245 1.00388 1.03414 1.23387 0.95533 1.04451 0.97424 1.23708 0.97405 0.96659 0.97889 1.21474 0.98334 1.02298 0.92585 1.22499 0.92762 1.02317 0.96869 0.91736 0.88783 0.90560 0.91420 0.89096 0.75703 0.87345 0.88471 0.91933 0.91454 0.92916 0.90153 0.89884 0.89380 0.91943 0.83674 0.84363 0.89064 0.91923 0.90992 0.88213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 8.75 71.98 0.63 -0.69 16 2 C 0.11 1.37 1.42 44.99 0.06 1.44 16 3 H 0.13 1.37 2.35 -2.39 -0.01 1.36 16 4 C 0.10 1.93 4.71 86.38 0.41 2.33 16 5 N -0.71 -17.76 4.95 -463.06 -2.29 -20.06 16 6 C 0.54 19.37 7.85 87.66 0.69 20.06 16 7 O -0.56 -24.73 15.86 -3.02 -0.05 -24.78 16 8 C -0.13 -5.31 6.16 71.24 0.44 -4.87 16 9 S -0.14 -7.73 20.57 -56.49 -1.16 -8.89 16 10 C -0.55 -31.44 9.50 67.96 0.65 -30.80 16 11 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 12 C 0.02 0.93 5.49 84.86 0.47 1.40 16 13 N -0.91 -55.63 13.22 21.65 0.29 -55.34 16 14 Si 1.00 43.66 29.55 68.60 2.03 45.68 16 15 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 16 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 17 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 18 N -0.60 -10.63 2.20 -822.58 -1.81 -12.44 16 19 C 0.08 1.56 9.61 127.77 1.23 2.79 16 20 C 0.52 11.12 6.51 87.66 0.57 11.69 16 21 O -0.57 -16.86 15.16 -3.02 -0.05 -16.90 16 22 C -0.06 -0.85 0.56 -52.99 -0.03 -0.88 16 23 C -0.14 -1.39 8.22 71.98 0.59 -0.80 16 24 C -0.19 -2.80 5.83 26.25 0.15 -2.65 16 25 C -0.14 -2.24 10.78 26.25 0.28 -1.96 16 26 C -0.11 -1.84 6.81 30.53 0.21 -1.63 16 27 C -0.11 -1.71 6.10 31.70 0.19 -1.52 16 28 H 0.06 0.60 7.83 -2.39 -0.02 0.58 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.54 7.58 -2.38 -0.02 0.52 16 31 H 0.07 1.41 6.70 -2.39 -0.02 1.39 16 32 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.41 9.09 5.69 -92.71 -0.53 8.56 16 34 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 35 H 0.10 3.71 8.14 -2.40 -0.02 3.69 16 36 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.05 1.23 7.65 -2.39 -0.02 1.21 16 39 H 0.08 1.43 6.23 -2.39 -0.01 1.41 16 40 H 0.08 0.58 4.30 -2.39 -0.01 0.57 16 41 H 0.09 0.61 8.07 -2.39 -0.02 0.60 16 42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.15 1.87 5.71 -2.91 -0.02 1.85 16 44 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.07 1.47 6.86 -2.39 -0.02 1.45 16 48 H 0.10 1.15 7.87 -2.38 -0.02 1.13 16 Total: -1.00 -78.97 387.24 3.94 -75.03 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.45 Total: 23.79 kcal Atomic # 6 Polarization: -12.63 SS G_CDS: 6.53 Total: -6.10 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -3.81 Total: -87.83 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.09 Total: -41.68 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -1.16 Total: -8.89 kcal Total: -78.97 3.94 -75.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734747410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.853 kcal (2) G-P(sol) polarization free energy of solvation -78.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds