Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46491 * 119.99742 * 2 1 4 4 C 1.53003 * 109.47120 * 84.22761 * 3 2 1 5 5 H 1.09003 * 109.58284 * 301.50342 * 4 3 2 6 6 C 1.53191 * 109.59033 * 61.93139 * 4 3 2 7 7 C 1.53033 * 109.31417 * 174.42279 * 6 4 3 8 8 C 1.53041 * 109.54205 * 298.63603 * 7 6 4 9 9 C 1.53194 * 109.30929 * 61.36318 * 8 7 6 10 10 N 1.46919 * 108.77823 * 305.37064 * 9 8 7 11 11 C 1.34781 * 120.62655 * 233.58960 * 10 9 8 12 12 O 1.21285 * 119.99790 * 175.06114 * 11 10 9 13 13 C 1.50700 * 120.00030 * 355.05281 * 11 10 9 14 14 S 1.81006 * 109.46956 * 180.02562 * 13 11 10 15 15 C 1.76205 * 99.99878 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99562 * 359.97438 * 15 14 13 17 17 C 1.38793 * 119.99576 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00401 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99660 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46932 * 89.99905 * 19 17 15 21 21 H 1.48495 * 109.47232 * 209.99870 * 19 17 15 22 22 H 1.48498 * 109.47176 * 330.00347 * 19 17 15 23 23 C 1.34776 * 119.99690 * 180.02562 * 2 1 3 24 24 O 1.21287 * 119.99625 * 180.02562 * 23 2 1 25 25 C 1.50697 * 120.00355 * 359.97438 * 23 2 1 26 26 C 1.52996 * 117.49858 * 248.74869 * 25 23 2 27 27 C 1.53003 * 117.49880 * 180.09087 * 25 23 2 28 28 H 1.08996 * 109.46628 * 264.74422 * 1 2 3 29 29 H 1.09007 * 109.46865 * 144.75142 * 1 2 3 30 30 H 1.08994 * 109.47269 * 24.74952 * 1 2 3 31 31 H 1.08998 * 109.47263 * 204.22136 * 3 2 1 32 32 H 1.08997 * 109.47705 * 324.22427 * 3 2 1 33 33 H 1.08998 * 109.49649 * 294.38169 * 6 4 3 34 34 H 1.09009 * 109.49218 * 54.47211 * 6 4 3 35 35 H 1.08999 * 109.45866 * 178.61805 * 7 6 4 36 36 H 1.09005 * 109.45046 * 58.65568 * 7 6 4 37 37 H 1.08997 * 109.49485 * 301.41915 * 8 7 6 38 38 H 1.08995 * 109.49598 * 181.31661 * 8 7 6 39 39 H 1.09002 * 109.58594 * 185.57663 * 9 8 7 40 40 H 1.09002 * 109.58274 * 65.15728 * 9 8 7 41 41 H 1.08998 * 109.47499 * 300.00304 * 13 11 10 42 42 H 1.08996 * 109.46699 * 60.00636 * 13 11 10 43 43 H 0.97005 * 120.00211 * 180.02562 * 18 17 15 44 44 H 1.08995 * 115.55086 * 34.41871 * 25 23 2 45 45 H 1.09005 * 117.50196 * 359.97438 * 26 25 23 46 46 H 1.09002 * 117.50296 * 145.02166 * 26 25 23 47 47 H 1.08996 * 117.49615 * 214.98282 * 27 25 23 48 48 H 1.08998 * 117.49798 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3268 1.7829 1.4352 5 1 1.3347 1.9121 1.8678 6 6 3.1277 0.7790 2.2703 7 6 3.3728 1.3615 3.6641 8 6 4.1895 2.6501 3.5440 9 6 3.4006 3.6753 2.7233 10 7 3.0354 3.0700 1.4354 11 6 3.3444 3.6839 0.2760 12 8 3.1183 3.1333 -0.7808 13 6 3.9706 5.0546 0.2927 14 16 4.2629 5.6050 -1.4067 15 6 4.9787 7.1852 -1.0975 16 1 5.1113 7.5286 -0.0822 17 6 5.3711 7.9888 -2.1589 18 7 5.2091 7.5705 -3.3963 19 14 6.1293 9.6643 -1.8312 20 1 7.6034 9.5263 -1.7143 21 1 5.8055 10.5821 -2.9528 22 1 5.5821 10.2164 -0.5659 23 6 2.1389 -1.1672 -0.0005 24 8 3.3518 -1.1672 -0.0001 25 6 1.3854 -2.4723 -0.0005 26 6 1.4587 -3.3303 1.2641 27 6 2.2076 -3.7627 0.0010 28 1 -0.3632 -0.0941 1.0233 29 1 -0.3633 -0.8393 -0.5931 30 1 -0.3633 0.9332 -0.4302 31 1 3.1908 1.1148 -0.4216 32 1 1.6572 2.0002 -0.6007 33 1 2.5661 -0.1511 2.3582 34 1 4.0838 0.5827 1.7847 35 1 3.9213 0.6389 4.2683 36 1 2.4165 1.5805 4.1392 37 1 5.1354 2.4362 3.0465 38 1 4.3835 3.0518 4.5385 39 1 4.0170 4.5576 2.5508 40 1 2.4970 3.9582 3.2634 41 1 3.2997 5.7545 0.7907 42 1 4.9180 5.0145 0.8301 43 1 5.4837 8.1320 -4.1381 44 1 0.4476 -2.4737 -0.5560 45 1 2.0523 -2.9511 2.0960 46 1 0.5693 -3.8966 1.5404 47 1 1.8104 -4.6131 -0.5532 48 1 3.2934 -3.6676 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001735611550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = -29.683588 kcal Electronic energy + Delta-G solvation = -28318.213445 eV Core-core repulsion = 24500.883786 eV Total energy + Delta-G solvation = -3817.329659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.74521 -39.72228 -37.21136 -36.51428 -35.51968 -32.91873 -32.43217 -32.12599 -29.02927 -27.69007 -26.64903 -25.50489 -24.74219 -23.86487 -22.70033 -21.80727 -21.00878 -19.10120 -18.99388 -17.60981 -17.60022 -16.76775 -16.23040 -15.67628 -15.45511 -15.21934 -14.81180 -14.78541 -14.49431 -14.25743 -14.08167 -13.81866 -13.63024 -13.28912 -13.12281 -12.92230 -12.82101 -12.57325 -12.41368 -12.24354 -12.02651 -11.81330 -11.56432 -11.14342 -11.06033 -11.04019 -11.02554 -10.83296 -10.79253 -10.75706 -10.73236 -10.69366 -9.88921 -9.80188 -9.10216 -9.06571 -8.52995 -8.43715 -8.22617 -6.49781 -6.21587 -3.92036 2.42027 2.71943 2.98948 3.08363 3.22357 3.27602 3.31076 3.61824 3.63003 4.20138 4.32852 4.51203 4.58984 4.62830 4.68678 4.73146 4.78963 4.91389 5.02073 5.06430 5.13658 5.15074 5.19891 5.28084 5.31652 5.36546 5.42191 5.53500 5.54531 5.55788 5.64276 5.67244 5.75039 5.83784 5.85249 5.87263 5.90006 6.00341 6.04230 6.12169 6.26297 6.36458 6.42807 6.76904 7.35510 7.54636 7.59677 8.16798 8.35123 8.53116 9.23779 10.85778 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.002712 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.983282 B =10322.160412 C =11268.635070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.120 3.880 4 C 0.137 3.863 5 H 0.066 0.934 6 C -0.124 4.124 7 C -0.118 4.118 8 C -0.136 4.136 9 C 0.110 3.890 10 N -0.613 5.613 11 C 0.535 3.465 12 O -0.512 6.512 13 C -0.151 4.151 14 S -0.060 6.060 15 C -0.535 4.535 16 H 0.072 0.928 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.540 3.460 24 O -0.534 6.534 25 C -0.195 4.195 26 C -0.153 4.153 27 C -0.150 4.150 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.123 0.877 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.104 -18.239 14.961 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.349 5.349 3 C -0.001 4.001 4 C 0.032 3.968 5 H 0.084 0.916 6 C -0.162 4.162 7 C -0.155 4.155 8 C -0.174 4.174 9 C -0.014 4.014 10 N -0.350 5.350 11 C 0.324 3.676 12 O -0.387 6.387 13 C -0.301 4.301 14 S 0.167 5.833 15 C -0.683 4.683 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.197 1.197 23 C 0.327 3.673 24 O -0.410 6.410 25 C -0.216 4.216 26 C -0.190 4.190 27 C -0.187 4.187 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.141 0.859 45 H 0.116 0.884 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.768 -18.959 13.182 25.479 hybrid contribution 0.539 1.817 1.561 2.455 sum -10.229 -17.142 14.743 24.816 Atomic orbital electron populations 1.21799 0.79915 1.03282 1.01496 1.48184 1.06990 1.06594 1.73146 1.22551 1.00291 0.82819 0.94455 1.21598 0.94602 0.83098 0.97502 0.91581 1.21933 1.01491 0.97482 0.95287 1.21511 0.99992 0.97030 0.97001 1.21929 0.99473 0.95838 1.00201 1.21729 0.99439 0.96417 0.83784 1.48166 1.59160 1.21415 1.06224 1.20387 0.77350 0.87006 0.82873 1.90679 1.52357 1.65001 1.30641 1.23579 1.02806 0.95360 1.08395 1.85387 1.80390 1.20046 0.97461 1.22852 1.47227 1.02740 0.95480 0.90974 1.24984 0.95415 0.98734 0.94435 1.70014 1.44677 1.37375 0.98192 0.86178 0.79352 0.81977 0.78054 1.20265 1.20759 1.19708 1.19635 0.87407 0.84388 0.75831 1.90709 1.13750 1.87147 1.49427 1.22288 1.02700 0.91193 1.05435 1.22907 1.03087 1.01596 0.91432 1.22955 1.00191 0.95402 1.00163 0.92797 0.91331 0.90665 0.87863 0.87577 0.91784 0.90687 0.91907 0.92151 0.91208 0.90774 0.89073 0.91536 0.89264 0.89282 0.92188 0.85927 0.88413 0.87958 0.88059 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 10.21 59.85 0.61 1.24 16 2 N -0.61 -7.45 2.62 -181.57 -0.48 -7.92 16 3 C 0.12 1.80 3.43 -4.04 -0.01 1.79 16 4 C 0.14 1.79 3.18 -67.60 -0.22 1.57 16 5 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 6 C -0.12 -1.51 4.17 -26.62 -0.11 -1.62 16 7 C -0.12 -1.15 5.88 -26.69 -0.16 -1.30 16 8 C -0.14 -1.36 6.08 -26.61 -0.16 -1.52 16 9 C 0.11 1.23 6.33 -3.71 -0.02 1.21 16 10 N -0.61 -8.85 2.97 -165.22 -0.49 -9.34 16 11 C 0.54 9.99 7.63 -10.98 -0.08 9.90 16 12 O -0.51 -11.03 11.27 5.55 0.06 -10.97 16 13 C -0.15 -3.04 4.55 36.01 0.16 -2.87 16 14 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 15 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 16 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 17 C 0.07 2.10 5.49 -17.44 -0.10 2.00 16 18 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 19 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 C 0.54 7.04 6.18 -10.99 -0.07 6.98 16 24 O -0.53 -9.07 14.68 5.55 0.08 -8.98 16 25 C -0.20 -1.79 5.30 -91.77 -0.49 -2.27 16 26 C -0.15 -1.13 10.24 -26.70 -0.27 -1.40 16 27 C -0.15 -1.27 10.05 -26.69 -0.27 -1.54 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.43 6.23 -51.92 -0.32 0.11 16 30 H 0.07 0.60 7.90 -51.93 -0.41 0.19 16 31 H 0.10 1.98 6.25 -51.93 -0.32 1.65 16 32 H 0.11 1.76 6.14 -51.93 -0.32 1.44 16 33 H 0.06 0.76 7.01 -51.93 -0.36 0.40 16 34 H 0.07 1.14 7.83 -51.92 -0.41 0.73 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 1.04 5.96 -51.93 -0.31 0.73 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 42 H 0.09 1.69 7.48 -51.92 -0.39 1.30 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.12 0.86 6.52 -51.93 -0.34 0.52 16 45 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.11 1.12 7.67 -51.93 -0.40 0.73 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -34.83 389.06 -10.12 -44.95 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.77 Total: 1.98 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -0.89 Total: -2.71 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.23 Total: -42.69 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: 0.14 Total: -19.95 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.83 -10.12 -44.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735611550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.268 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds