Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46509 * 1 3 3 C 1.46491 * 119.99742 * 2 1 4 4 C 1.53003 * 109.47120 * 84.22761 * 3 2 1 5 5 H 1.09003 * 109.58284 * 301.50342 * 4 3 2 6 6 C 1.53191 * 109.59033 * 61.93139 * 4 3 2 7 7 C 1.53033 * 109.31417 * 174.42279 * 6 4 3 8 8 C 1.53041 * 109.54205 * 298.63603 * 7 6 4 9 9 C 1.53194 * 109.30929 * 61.36318 * 8 7 6 10 10 N 1.46919 * 108.77823 * 305.37064 * 9 8 7 11 11 C 1.34781 * 120.62655 * 233.58960 * 10 9 8 12 12 O 1.21285 * 119.99790 * 175.06114 * 11 10 9 13 13 C 1.50700 * 120.00030 * 355.05281 * 11 10 9 14 14 S 1.81006 * 109.46956 * 180.02562 * 13 11 10 15 15 C 1.76205 * 99.99878 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99562 * 359.97438 * 15 14 13 17 17 C 1.38793 * 119.99576 * 180.02562 * 15 14 13 18 18 N 1.31623 * 120.00401 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99660 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46932 * 89.99905 * 19 17 15 21 21 H 1.48495 * 109.47232 * 209.99870 * 19 17 15 22 22 H 1.48498 * 109.47176 * 330.00347 * 19 17 15 23 23 C 1.34776 * 119.99690 * 180.02562 * 2 1 3 24 24 O 1.21287 * 119.99625 * 180.02562 * 23 2 1 25 25 C 1.50697 * 120.00355 * 359.97438 * 23 2 1 26 26 C 1.52996 * 117.49858 * 248.74869 * 25 23 2 27 27 C 1.53003 * 117.49880 * 180.09087 * 25 23 2 28 28 H 1.08996 * 109.46628 * 264.74422 * 1 2 3 29 29 H 1.09007 * 109.46865 * 144.75142 * 1 2 3 30 30 H 1.08994 * 109.47269 * 24.74952 * 1 2 3 31 31 H 1.08998 * 109.47263 * 204.22136 * 3 2 1 32 32 H 1.08997 * 109.47705 * 324.22427 * 3 2 1 33 33 H 1.08998 * 109.49649 * 294.38169 * 6 4 3 34 34 H 1.09009 * 109.49218 * 54.47211 * 6 4 3 35 35 H 1.08999 * 109.45866 * 178.61805 * 7 6 4 36 36 H 1.09005 * 109.45046 * 58.65568 * 7 6 4 37 37 H 1.08997 * 109.49485 * 301.41915 * 8 7 6 38 38 H 1.08995 * 109.49598 * 181.31661 * 8 7 6 39 39 H 1.09002 * 109.58594 * 185.57663 * 9 8 7 40 40 H 1.09002 * 109.58274 * 65.15728 * 9 8 7 41 41 H 1.08998 * 109.47499 * 300.00304 * 13 11 10 42 42 H 1.08996 * 109.46699 * 60.00636 * 13 11 10 43 43 H 0.97005 * 120.00211 * 180.02562 * 18 17 15 44 44 H 1.08995 * 115.55086 * 34.41871 * 25 23 2 45 45 H 1.09005 * 117.50196 * 359.97438 * 26 25 23 46 46 H 1.09002 * 117.50296 * 145.02166 * 26 25 23 47 47 H 1.08996 * 117.49615 * 214.98282 * 27 25 23 48 48 H 1.08998 * 117.49798 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3268 1.7829 1.4352 5 1 1.3347 1.9121 1.8678 6 6 3.1277 0.7790 2.2703 7 6 3.3728 1.3615 3.6641 8 6 4.1895 2.6501 3.5440 9 6 3.4006 3.6753 2.7233 10 7 3.0354 3.0700 1.4354 11 6 3.3444 3.6839 0.2760 12 8 3.1183 3.1333 -0.7808 13 6 3.9706 5.0546 0.2927 14 16 4.2629 5.6050 -1.4067 15 6 4.9787 7.1852 -1.0975 16 1 5.1113 7.5286 -0.0822 17 6 5.3711 7.9888 -2.1589 18 7 5.2091 7.5705 -3.3963 19 14 6.1293 9.6643 -1.8312 20 1 7.6034 9.5263 -1.7143 21 1 5.8055 10.5821 -2.9528 22 1 5.5821 10.2164 -0.5659 23 6 2.1389 -1.1672 -0.0005 24 8 3.3518 -1.1672 -0.0001 25 6 1.3854 -2.4723 -0.0005 26 6 1.4587 -3.3303 1.2641 27 6 2.2076 -3.7627 0.0010 28 1 -0.3632 -0.0941 1.0233 29 1 -0.3633 -0.8393 -0.5931 30 1 -0.3633 0.9332 -0.4302 31 1 3.1908 1.1148 -0.4216 32 1 1.6572 2.0002 -0.6007 33 1 2.5661 -0.1511 2.3582 34 1 4.0838 0.5827 1.7847 35 1 3.9213 0.6389 4.2683 36 1 2.4165 1.5805 4.1392 37 1 5.1354 2.4362 3.0465 38 1 4.3835 3.0518 4.5385 39 1 4.0170 4.5576 2.5508 40 1 2.4970 3.9582 3.2634 41 1 3.2997 5.7545 0.7907 42 1 4.9180 5.0145 0.8301 43 1 5.4837 8.1320 -4.1381 44 1 0.4476 -2.4737 -0.5560 45 1 2.0523 -2.9511 2.0960 46 1 0.5693 -3.8966 1.5404 47 1 1.8104 -4.6131 -0.5532 48 1 3.2934 -3.6676 0.0016 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001735611550.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = -51.573632 kcal Electronic energy + Delta-G solvation = -28319.162669 eV Core-core repulsion = 24500.883786 eV Total energy + Delta-G solvation = -3818.278883 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90892 -40.81647 -38.43905 -37.30548 -36.54725 -34.59846 -34.09835 -33.14349 -30.50267 -28.69457 -27.69972 -27.48524 -25.79598 -24.76695 -23.31469 -22.84130 -22.08109 -20.48560 -19.92527 -19.45597 -18.49666 -18.04247 -17.37134 -16.89262 -16.86074 -16.56971 -16.41783 -15.89952 -15.62918 -15.28453 -15.14655 -14.97709 -14.91458 -14.50869 -14.27183 -14.17480 -13.91270 -13.58965 -13.53162 -13.39227 -13.18260 -13.10355 -12.91100 -12.64670 -12.57913 -12.42941 -12.18795 -12.02676 -11.73223 -11.69883 -11.62219 -11.50281 -11.40976 -11.15313 -10.97545 -10.40298 -10.27079 -9.65017 -9.59379 -8.67794 -8.35530 -6.13634 1.23029 1.41458 1.42773 1.48334 1.52645 1.54729 1.81994 2.24599 2.28318 2.92574 2.98640 3.23337 3.51932 3.55721 3.73997 3.79443 3.84353 3.93710 3.99050 4.02740 4.13733 4.17013 4.22395 4.24592 4.37204 4.41619 4.44304 4.54723 4.66031 4.70511 4.73770 4.82602 4.84579 4.90559 4.95176 5.00058 5.02133 5.06670 5.13795 5.15908 5.23166 5.39482 5.40632 5.42304 5.63384 6.18633 6.25673 6.41847 7.05646 7.09109 7.20687 8.73669 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017785 B = 0.002712 C = 0.002484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.983282 B =10322.160412 C =11268.635070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.614 5.614 3 C 0.132 3.868 4 C 0.140 3.860 5 H 0.097 0.903 6 C -0.113 4.113 7 C -0.112 4.112 8 C -0.132 4.132 9 C 0.100 3.900 10 N -0.603 5.603 11 C 0.530 3.470 12 O -0.552 6.552 13 C -0.123 4.123 14 S -0.150 6.150 15 C -0.545 4.545 16 H 0.083 0.917 17 C 0.013 3.987 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.256 1.256 23 C 0.529 3.471 24 O -0.587 6.587 25 C -0.201 4.201 26 C -0.130 4.130 27 C -0.160 4.160 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.102 0.898 43 H 0.271 0.729 44 H 0.152 0.848 45 H 0.086 0.914 46 H 0.137 0.863 47 H 0.127 0.873 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 -18.344 18.541 29.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.348 5.348 3 C 0.009 3.991 4 C 0.036 3.964 5 H 0.115 0.885 6 C -0.151 4.151 7 C -0.149 4.149 8 C -0.170 4.170 9 C -0.022 4.022 10 N -0.338 5.338 11 C 0.318 3.682 12 O -0.430 6.430 13 C -0.274 4.274 14 S 0.077 5.923 15 C -0.692 4.692 16 H 0.101 0.899 17 C -0.192 4.192 18 N -0.548 5.548 19 Si 0.820 3.180 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.180 1.180 23 C 0.319 3.681 24 O -0.468 6.468 25 C -0.222 4.222 26 C -0.167 4.167 27 C -0.197 4.197 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.052 0.948 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.117 0.883 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.169 0.831 45 H 0.105 0.895 46 H 0.155 0.845 47 H 0.145 0.855 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.866 -19.082 16.819 28.505 hybrid contribution 1.144 1.729 0.493 2.131 sum -11.722 -17.353 17.313 27.171 Atomic orbital electron populations 1.22093 0.76940 1.04280 1.03645 1.48235 1.08729 1.05308 1.72488 1.21998 0.97656 0.83930 0.95490 1.21690 0.95913 0.82473 0.96312 0.88504 1.21798 0.99217 0.97571 0.96533 1.21515 1.01413 0.96900 0.95105 1.21929 0.98155 0.95711 1.01253 1.22094 1.01149 0.96598 0.82319 1.48175 1.57917 1.21485 1.06183 1.20201 0.77621 0.86656 0.83689 1.90697 1.54116 1.65696 1.32475 1.23384 1.04109 0.96676 1.03206 1.85577 1.80905 1.21192 1.04580 1.23186 1.47166 1.02747 0.96137 0.89929 1.26134 0.95717 1.03350 0.93996 1.70185 1.45993 1.39240 0.99409 0.84955 0.78405 0.76119 0.78511 1.19456 1.20253 1.18004 1.20427 0.87101 0.85826 0.74741 1.90688 1.16260 1.87958 1.51866 1.22328 1.03255 0.88877 1.07698 1.23022 1.03601 0.99995 0.90095 1.23013 0.98776 0.95955 1.01962 0.90169 0.89047 0.90833 0.93119 0.89612 0.91349 0.94790 0.90851 0.89570 0.93516 0.87575 0.89263 0.88293 0.87210 0.88010 0.92018 0.83097 0.89527 0.84475 0.85506 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.21 127.77 1.30 2.32 16 2 N -0.61 -15.05 2.62 -846.76 -2.22 -17.26 16 3 C 0.13 4.22 3.43 86.38 0.30 4.52 16 4 C 0.14 3.60 3.18 44.98 0.14 3.74 16 5 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 6 C -0.11 -2.71 4.17 30.67 0.13 -2.58 16 7 C -0.11 -1.86 5.88 30.62 0.18 -1.68 16 8 C -0.13 -2.30 6.08 30.67 0.19 -2.11 16 9 C 0.10 2.00 6.33 86.36 0.55 2.54 16 10 N -0.60 -17.14 2.97 -795.02 -2.36 -19.50 16 11 C 0.53 20.48 7.63 87.66 0.67 21.15 16 12 O -0.55 -25.58 11.27 -3.05 -0.03 -25.61 16 13 C -0.12 -5.01 4.55 71.24 0.32 -4.68 16 14 S -0.15 -8.44 20.57 -56.49 -1.16 -9.61 16 15 C -0.54 -31.36 9.50 67.95 0.65 -30.72 16 16 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 17 C 0.01 0.73 5.49 84.86 0.47 1.20 16 18 N -0.91 -56.65 13.22 21.65 0.29 -56.37 16 19 Si 1.00 43.94 29.55 68.60 2.03 45.97 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 23 C 0.53 14.21 6.18 87.66 0.54 14.75 16 24 O -0.59 -21.67 14.68 -3.05 -0.04 -21.72 16 25 C -0.20 -3.37 5.30 -11.54 -0.06 -3.43 16 26 C -0.13 -1.59 10.24 30.62 0.31 -1.28 16 27 C -0.16 -2.57 10.05 30.62 0.31 -2.26 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.88 6.23 -2.38 -0.01 0.87 16 30 H 0.07 1.08 7.90 -2.39 -0.02 1.06 16 31 H 0.05 2.17 6.25 -2.39 -0.01 2.15 16 32 H 0.09 3.07 6.14 -2.39 -0.01 3.06 16 33 H 0.07 1.58 7.01 -2.39 -0.02 1.56 16 34 H 0.03 1.10 7.83 -2.38 -0.02 1.08 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.84 5.96 -2.39 -0.01 1.82 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.11 4.00 8.11 -2.40 -0.02 3.98 16 42 H 0.10 3.87 7.48 -2.40 -0.02 3.85 16 43 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 44 H 0.15 1.64 6.52 -2.39 -0.02 1.62 16 45 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.14 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.08 1.74 7.67 -2.39 -0.02 1.72 16 Total: -1.00 -83.95 389.06 3.43 -80.51 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.95 Total: 22.13 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 5.99 Total: 1.46 kcal Atomic # 7 Polarization: -88.84 SS G_CDS: -4.29 Total: -93.13 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.08 Total: -47.33 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.61 kcal Total: -83.95 3.43 -80.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001735611550.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.938 kcal (2) G-P(sol) polarization free energy of solvation -83.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds