Wall clock time and date at job start Sat Apr 11 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.50695 * 109.47191 * 119.99887 * 2 1 3 5 5 O 1.21284 * 119.99997 * 120.00600 * 4 2 1 6 6 N 1.34774 * 120.00251 * 299.99919 * 4 2 1 7 7 C 1.46500 * 120.00387 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47482 * 179.97438 * 7 6 4 9 9 H 1.09007 * 112.84587 * 43.80625 * 8 7 6 10 10 C 1.53782 * 113.61657 * 174.99346 * 8 7 6 11 11 C 1.53779 * 87.07958 * 140.06581 * 10 8 7 12 12 H 1.09004 * 113.61070 * 89.20240 * 11 10 8 13 13 N 1.46499 * 113.61675 * 220.01968 * 11 10 8 14 14 C 1.34778 * 120.00278 * 204.99969 * 13 11 10 15 15 O 1.21278 * 119.99748 * 0.02562 * 14 13 11 16 16 C 1.50697 * 120.00209 * 180.02562 * 14 13 11 17 17 S 1.80999 * 109.47181 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99825 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00405 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99855 * 179.72221 * 18 17 16 21 21 N 1.31634 * 119.99756 * 0.27728 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 180.27923 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00123 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00074 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99873 * 22 20 18 26 26 C 1.53780 * 87.08570 * 334.57174 * 11 10 8 27 27 C 1.52996 * 109.46919 * 240.00079 * 2 1 3 28 28 C 1.53003 * 117.49901 * 128.74464 * 27 2 1 29 29 C 1.53004 * 117.49806 * 60.08527 * 27 2 1 30 30 H 1.09003 * 109.47077 * 300.00002 * 1 2 3 31 31 H 1.08995 * 109.47433 * 59.99756 * 1 2 3 32 32 H 1.09001 * 109.46798 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99938 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46924 * 59.99488 * 7 6 4 35 35 H 1.09001 * 109.46787 * 300.00191 * 7 6 4 36 36 H 1.08998 * 113.61183 * 25.52011 * 10 8 7 37 37 H 1.08997 * 113.69431 * 254.62934 * 10 8 7 38 38 H 0.97000 * 119.99972 * 25.00324 * 13 11 10 39 39 H 1.08999 * 109.47278 * 59.99800 * 16 14 13 40 40 H 1.09002 * 109.46837 * 300.00183 * 16 14 13 41 41 H 0.97000 * 119.99219 * 179.97438 * 21 20 18 42 42 H 1.09000 * 113.61956 * 139.97554 * 26 11 10 43 43 H 1.08996 * 113.61235 * 270.88590 * 26 11 10 44 44 H 1.08996 * 115.54977 * 274.41330 * 27 2 1 45 45 H 1.09003 * 117.49841 * 359.97438 * 28 27 2 46 46 H 1.09001 * 117.49951 * 145.01414 * 28 27 2 47 47 H 1.08999 * 117.49646 * 214.97278 * 29 27 2 48 48 H 1.09001 * 117.50207 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 2.1956 -0.9401 3.6507 8 6 1.6861 -0.2186 4.9000 9 1 0.6355 0.0627 4.8273 10 6 2.0426 -0.9346 6.2134 11 6 2.3195 0.4574 6.8054 12 1 1.4424 0.9230 7.2549 13 7 3.4963 0.5011 7.6768 14 6 3.5903 1.4437 8.6355 15 8 2.7004 2.2554 8.7772 16 6 4.8011 1.4890 9.5315 17 16 4.6313 2.8551 10.7066 18 6 6.1386 2.6778 11.6017 19 1 6.8310 1.8903 11.3430 20 6 6.4392 3.5542 12.6353 21 7 5.5956 4.5143 12.9504 22 14 8.0408 3.3711 13.5792 23 1 9.0989 4.1778 12.9199 24 1 7.8512 3.8475 14.9729 25 1 8.4453 1.9423 13.5952 26 6 2.5995 0.9266 5.3679 27 6 2.0399 -0.7212 -1.2492 28 6 3.0762 0.0040 -2.1101 29 6 1.6373 -0.1483 -2.6096 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1488 0.5385 2.5435 34 1 3.2856 -0.9398 3.6505 35 1 1.8327 -1.9680 3.6509 36 1 2.9304 -1.5628 6.1412 37 1 1.1988 -1.4461 6.6765 38 1 4.2079 -0.1483 7.5637 39 1 5.6954 1.6386 8.9266 40 1 4.8847 0.5491 10.0772 41 1 5.8055 5.1265 13.6729 42 1 2.2044 1.9182 5.1474 43 1 3.6396 0.8072 5.0645 44 1 2.1253 -1.8045 -1.1647 45 1 3.3944 0.9951 -1.7867 46 1 3.8431 -0.6023 -2.5922 47 1 1.4582 -0.8547 -3.4201 48 1 1.0094 0.7427 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736062794.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:05 Heat of formation + Delta-G solvation = -46.636351 kcal Electronic energy + Delta-G solvation = -25732.125966 eV Core-core repulsion = 21914.061179 eV Total energy + Delta-G solvation = -3818.064786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.59500 -39.91011 -38.31274 -37.58357 -34.99627 -33.31441 -32.48401 -32.43217 -29.45823 -27.75239 -26.00094 -25.53776 -25.41212 -22.90124 -22.68122 -21.62009 -20.42564 -20.33858 -19.61163 -17.81205 -17.79455 -16.74132 -16.41234 -16.12782 -15.84955 -15.47639 -15.20837 -14.97014 -14.81131 -14.65657 -14.14257 -14.03322 -13.83613 -13.31833 -13.23579 -12.80725 -12.76936 -12.69550 -12.56194 -12.38454 -12.31277 -11.88457 -11.84395 -11.49328 -11.42814 -11.07093 -11.04177 -10.97901 -10.78695 -10.77758 -10.65658 -10.46487 -10.02897 -9.81843 -9.42162 -9.39096 -9.07761 -8.87556 -8.24967 -6.51065 -6.22643 -3.93213 2.30811 2.73380 3.03945 3.04558 3.21828 3.27648 3.32047 3.39280 3.71315 4.09927 4.14756 4.18554 4.19822 4.32716 4.43781 4.45512 4.60827 4.63582 4.75510 4.84408 4.90217 4.96001 5.08951 5.12682 5.16724 5.21070 5.23006 5.31383 5.40240 5.43074 5.47628 5.48920 5.54337 5.62033 5.69264 5.70163 5.75685 5.77037 5.86793 5.88039 6.04778 6.12853 6.16356 6.64925 7.11948 7.58792 7.69843 7.87590 8.34366 8.59296 9.22837 10.84799 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024522 B = 0.001488 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.541873 B =18818.511603 C =19192.486019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.097 0.903 4 C 0.518 3.482 5 O -0.538 6.538 6 N -0.729 5.729 7 C 0.132 3.868 8 C -0.123 4.123 9 H 0.100 0.900 10 C -0.136 4.136 11 C 0.127 3.873 12 H 0.115 0.885 13 N -0.729 5.729 14 C 0.533 3.467 15 O -0.518 6.518 16 C -0.155 4.155 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.148 4.148 27 C -0.136 4.136 28 C -0.178 4.178 29 C -0.178 4.178 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.401 0.599 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.399 0.601 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.543 -11.593 -28.065 32.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 H 0.115 0.885 4 C 0.305 3.695 5 O -0.414 6.414 6 N -0.381 5.381 7 C 0.008 3.992 8 C -0.142 4.142 9 H 0.118 0.882 10 C -0.175 4.175 11 C 0.021 3.979 12 H 0.133 0.867 13 N -0.382 5.382 14 C 0.319 3.681 15 O -0.392 6.392 16 C -0.305 4.305 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.187 4.187 27 C -0.154 4.154 28 C -0.215 4.215 29 C -0.215 4.215 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.235 0.765 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.134 0.866 45 H 0.112 0.888 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.557 -10.797 -27.749 31.939 hybrid contribution 2.212 -0.933 0.452 2.443 sum -9.345 -11.730 -27.297 31.146 Atomic orbital electron populations 1.21757 0.92458 1.02996 1.02710 1.20869 0.97464 1.00042 0.91863 0.88482 1.20547 0.79928 0.84544 0.84522 1.90702 1.37594 1.26357 1.86767 1.46023 1.54048 1.32336 1.05660 1.21352 0.99321 0.96005 0.82485 1.22623 1.00479 0.97722 0.93408 0.88209 1.23331 1.02567 0.96815 0.94755 1.22355 0.90398 0.96197 0.88920 0.86666 1.45991 1.22420 1.34385 1.35362 1.20353 0.87955 0.80049 0.79705 1.90690 1.40382 1.38619 1.69553 1.23545 0.98048 1.07163 1.01779 1.85380 1.28699 1.34109 1.35210 1.22874 1.05742 1.19167 1.20646 0.90928 1.24991 0.97766 0.94460 0.96326 1.70021 1.35293 1.16070 1.28912 0.86169 0.82001 0.78545 0.78792 1.20271 1.20733 1.19693 1.23597 1.00148 0.98523 0.96428 1.22040 1.03625 1.00101 0.89684 1.23035 0.92578 1.01913 1.03940 1.22992 0.98240 1.03233 0.97042 0.92017 0.91213 0.91861 0.76453 0.91214 0.91312 0.89245 0.90333 0.76715 0.89235 0.89204 0.92184 0.90796 0.89498 0.86644 0.88824 0.88691 0.88667 0.88706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 8.93 37.16 0.33 -0.26 16 2 C -0.08 -0.49 2.88 -91.78 -0.26 -0.75 16 3 H 0.10 0.47 7.90 -51.93 -0.41 0.06 16 4 C 0.52 4.51 7.15 -10.99 -0.08 4.43 16 5 O -0.54 -6.90 15.65 5.55 0.09 -6.81 16 6 N -0.73 -4.81 5.45 -60.30 -0.33 -5.14 16 7 C 0.13 0.95 5.51 -4.04 -0.02 0.93 16 8 C -0.12 -0.79 3.75 -89.81 -0.34 -1.12 16 9 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 10 C -0.14 -0.98 7.39 -25.92 -0.19 -1.17 16 11 C 0.13 1.33 4.24 -67.12 -0.28 1.04 16 12 H 0.12 1.42 7.46 -51.93 -0.39 1.04 16 13 N -0.73 -9.19 5.35 -53.02 -0.28 -9.47 16 14 C 0.53 9.67 7.85 -10.99 -0.09 9.59 16 15 O -0.52 -11.48 15.46 5.56 0.09 -11.40 16 16 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 18 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 22 Si 0.92 21.36 29.55 -169.99 -5.02 16.33 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.15 -1.27 7.43 -25.92 -0.19 -1.46 16 27 C -0.14 -0.95 4.75 -90.62 -0.43 -1.38 16 28 C -0.18 -1.12 10.18 -26.69 -0.27 -1.39 16 29 C -0.18 -0.93 9.74 -26.69 -0.26 -1.19 16 30 H 0.06 0.19 7.56 -51.93 -0.39 -0.21 16 31 H 0.07 0.23 7.29 -51.93 -0.38 -0.15 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.40 1.71 7.89 -40.82 -0.32 1.39 16 34 H 0.07 0.59 7.85 -51.93 -0.41 0.18 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 0.59 8.08 -51.93 -0.42 0.17 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.40 3.92 8.73 -40.82 -0.36 3.56 16 39 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 40 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 41 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.09 0.77 7.90 -51.93 -0.41 0.36 16 44 H 0.12 1.01 7.47 -51.93 -0.39 0.63 16 45 H 0.09 0.54 8.05 -51.93 -0.42 0.12 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.09 0.40 7.61 -51.93 -0.40 0.00 16 LS Contribution 410.73 15.07 6.19 6.19 Total: -1.00 -36.30 410.73 -10.45 -46.75 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -8.04 Total: 1.29 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.67 Total: -8.54 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.12 Total: -39.96 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.17 Total: -18.21 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.30 -10.45 -46.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736062794.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.114 kcal (2) G-P(sol) polarization free energy of solvation -36.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds