Wall clock time and date at job start Sat Apr 11 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.50695 * 109.47191 * 119.99887 * 2 1 3 5 5 O 1.21284 * 119.99997 * 120.00600 * 4 2 1 6 6 N 1.34774 * 120.00251 * 299.99919 * 4 2 1 7 7 C 1.46500 * 120.00387 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47482 * 179.97438 * 7 6 4 9 9 H 1.09007 * 112.84587 * 43.80625 * 8 7 6 10 10 C 1.53782 * 113.61657 * 174.99346 * 8 7 6 11 11 C 1.53779 * 87.07958 * 140.06581 * 10 8 7 12 12 H 1.09004 * 113.61070 * 89.20240 * 11 10 8 13 13 N 1.46499 * 113.61675 * 220.01968 * 11 10 8 14 14 C 1.34778 * 120.00278 * 204.99969 * 13 11 10 15 15 O 1.21278 * 119.99748 * 0.02562 * 14 13 11 16 16 C 1.50697 * 120.00209 * 180.02562 * 14 13 11 17 17 S 1.80999 * 109.47181 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99825 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00405 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99855 * 179.72221 * 18 17 16 21 21 N 1.31634 * 119.99756 * 0.27728 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 180.27923 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00123 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00074 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99873 * 22 20 18 26 26 C 1.53780 * 87.08570 * 334.57174 * 11 10 8 27 27 C 1.52996 * 109.46919 * 240.00079 * 2 1 3 28 28 C 1.53003 * 117.49901 * 128.74464 * 27 2 1 29 29 C 1.53004 * 117.49806 * 60.08527 * 27 2 1 30 30 H 1.09003 * 109.47077 * 300.00002 * 1 2 3 31 31 H 1.08995 * 109.47433 * 59.99756 * 1 2 3 32 32 H 1.09001 * 109.46798 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99938 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.46924 * 59.99488 * 7 6 4 35 35 H 1.09001 * 109.46787 * 300.00191 * 7 6 4 36 36 H 1.08998 * 113.61183 * 25.52011 * 10 8 7 37 37 H 1.08997 * 113.69431 * 254.62934 * 10 8 7 38 38 H 0.97000 * 119.99972 * 25.00324 * 13 11 10 39 39 H 1.08999 * 109.47278 * 59.99800 * 16 14 13 40 40 H 1.09002 * 109.46837 * 300.00183 * 16 14 13 41 41 H 0.97000 * 119.99219 * 179.97438 * 21 20 18 42 42 H 1.09000 * 113.61956 * 139.97554 * 26 11 10 43 43 H 1.08996 * 113.61235 * 270.88590 * 26 11 10 44 44 H 1.08996 * 115.54977 * 274.41330 * 27 2 1 45 45 H 1.09003 * 117.49841 * 359.97438 * 28 27 2 46 46 H 1.09001 * 117.49951 * 145.01414 * 28 27 2 47 47 H 1.08999 * 117.49646 * 214.97278 * 29 27 2 48 48 H 1.09001 * 117.50207 * 0.02562 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7297 -1.6964 1.1192 6 7 1.7068 -0.2499 2.4545 7 6 2.1956 -0.9401 3.6507 8 6 1.6861 -0.2186 4.9000 9 1 0.6355 0.0627 4.8273 10 6 2.0426 -0.9346 6.2134 11 6 2.3195 0.4574 6.8054 12 1 1.4424 0.9230 7.2549 13 7 3.4963 0.5011 7.6768 14 6 3.5903 1.4437 8.6355 15 8 2.7004 2.2554 8.7772 16 6 4.8011 1.4890 9.5315 17 16 4.6313 2.8551 10.7066 18 6 6.1386 2.6778 11.6017 19 1 6.8310 1.8903 11.3430 20 6 6.4392 3.5542 12.6353 21 7 5.5956 4.5143 12.9504 22 14 8.0408 3.3711 13.5792 23 1 9.0989 4.1778 12.9199 24 1 7.8512 3.8475 14.9729 25 1 8.4453 1.9423 13.5952 26 6 2.5995 0.9266 5.3679 27 6 2.0399 -0.7212 -1.2492 28 6 3.0762 0.0040 -2.1101 29 6 1.6373 -0.1483 -2.6096 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1488 0.5385 2.5435 34 1 3.2856 -0.9398 3.6505 35 1 1.8327 -1.9680 3.6509 36 1 2.9304 -1.5628 6.1412 37 1 1.1988 -1.4461 6.6765 38 1 4.2079 -0.1483 7.5637 39 1 5.6954 1.6386 8.9266 40 1 4.8847 0.5491 10.0772 41 1 5.8055 5.1265 13.6729 42 1 2.2044 1.9182 5.1474 43 1 3.6396 0.8072 5.0645 44 1 2.1253 -1.8045 -1.1647 45 1 3.3944 0.9951 -1.7867 46 1 3.8431 -0.6023 -2.5922 47 1 1.4582 -0.8547 -3.4201 48 1 1.0094 0.7427 -2.6146 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001736062794.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:04 Heat of formation + Delta-G solvation = -71.555593 kcal Electronic energy + Delta-G solvation = -25733.206545 eV Core-core repulsion = 21914.061179 eV Total energy + Delta-G solvation = -3819.145366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34378 -40.83170 -39.40840 -38.15722 -35.78980 -34.59307 -34.38226 -33.02573 -30.85999 -28.56946 -27.65079 -26.66738 -25.90005 -23.73945 -23.13425 -22.24039 -21.66648 -21.00824 -20.31088 -19.72493 -18.41323 -17.81254 -17.47511 -17.03154 -16.87959 -16.57809 -16.43673 -16.08710 -15.91510 -15.73082 -15.22675 -14.78231 -14.71044 -14.51720 -14.44627 -13.88950 -13.64240 -13.40968 -13.27534 -13.16789 -13.13638 -12.96773 -12.89380 -12.83709 -12.63926 -12.30324 -12.22480 -11.87866 -11.73994 -11.67343 -11.37728 -11.28157 -11.14523 -10.94298 -10.88849 -10.66982 -10.27988 -10.07617 -9.97658 -8.66653 -8.35044 -6.12955 1.27540 1.42187 1.47366 1.57907 1.61091 1.65756 2.16424 2.26807 2.36730 2.92858 2.99186 3.32211 3.49461 3.53822 3.65980 3.77394 3.81023 3.86954 3.99437 4.00383 4.14069 4.27666 4.31145 4.34903 4.45153 4.49654 4.51174 4.53628 4.71588 4.78334 4.79346 4.85733 4.87444 4.91190 4.99109 5.05050 5.07301 5.11620 5.25676 5.29376 5.31101 5.36823 5.41591 5.50798 5.64374 6.19493 6.54114 6.57194 7.06442 7.27098 7.27431 8.74172 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024522 B = 0.001488 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.541873 B =18818.511603 C =19192.486019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.075 4.075 3 H 0.114 0.886 4 C 0.514 3.486 5 O -0.586 6.586 6 N -0.717 5.717 7 C 0.135 3.865 8 C -0.102 4.102 9 H 0.117 0.883 10 C -0.123 4.123 11 C 0.109 3.891 12 H 0.095 0.905 13 N -0.703 5.703 14 C 0.535 3.465 15 O -0.566 6.566 16 C -0.132 4.132 17 S -0.151 6.151 18 C -0.548 4.548 19 H 0.082 0.918 20 C 0.015 3.985 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.259 1.259 26 C -0.144 4.144 27 C -0.152 4.152 28 C -0.188 4.188 29 C -0.160 4.160 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.415 0.585 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.415 0.585 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.099 0.901 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 -12.521 -29.259 33.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 H 0.131 0.869 4 C 0.301 3.699 5 O -0.466 6.466 6 N -0.369 5.369 7 C 0.011 3.989 8 C -0.121 4.121 9 H 0.135 0.865 10 C -0.161 4.161 11 C 0.005 3.995 12 H 0.113 0.887 13 N -0.356 5.356 14 C 0.321 3.679 15 O -0.444 6.444 16 C -0.283 4.283 17 S 0.077 5.923 18 C -0.696 4.696 19 H 0.100 0.900 20 C -0.190 4.190 21 N -0.547 5.547 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.183 1.183 26 C -0.183 4.183 27 C -0.171 4.171 28 C -0.225 4.225 29 C -0.197 4.197 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.252 0.748 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.107 0.893 38 H 0.253 0.747 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.105 0.895 44 H 0.108 0.892 45 H 0.119 0.881 46 H 0.107 0.893 47 H 0.117 0.883 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.304 -11.751 -28.978 33.251 hybrid contribution 2.089 -0.724 0.715 2.324 sum -9.215 -12.475 -28.263 32.239 Atomic orbital electron populations 1.21768 0.90836 1.02755 1.04201 1.20885 0.98655 1.00114 0.89941 0.86856 1.21076 0.79145 0.83993 0.85669 1.90681 1.39891 1.28580 1.87470 1.45956 1.53518 1.32439 1.05035 1.21268 0.98681 0.96048 0.82875 1.22489 1.00844 0.96133 0.92593 0.86490 1.23303 1.03519 0.95045 0.94264 1.22628 0.88807 0.99030 0.89077 0.88654 1.45788 1.23478 1.32740 1.33600 1.20068 0.86776 0.80666 0.80439 1.90678 1.41738 1.40872 1.71157 1.23399 0.99871 1.04442 1.00596 1.85539 1.29724 1.38850 1.38232 1.23216 1.05824 1.19566 1.20988 0.89994 1.26113 1.01761 0.93838 0.97313 1.70183 1.37671 1.17155 1.29707 0.84963 0.76835 0.79194 0.77046 1.19334 1.20237 1.18258 1.23564 1.00740 0.99167 0.94853 1.21991 1.04971 0.98934 0.91171 1.23111 0.93152 1.02040 1.04172 1.23067 0.97368 1.03509 0.95772 0.90437 0.89834 0.92952 0.74833 0.92357 0.91603 0.88020 0.89286 0.74738 0.87389 0.87311 0.91982 0.91211 0.89457 0.89243 0.88146 0.89300 0.88269 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.93 71.98 0.64 -0.21 16 2 C -0.07 -0.79 2.88 -11.54 -0.03 -0.82 16 3 H 0.11 0.84 7.90 -2.39 -0.02 0.82 16 4 C 0.51 8.51 7.15 87.66 0.63 9.14 16 5 O -0.59 -15.27 15.65 -3.04 -0.05 -15.32 16 6 N -0.72 -8.18 5.45 -463.07 -2.52 -10.70 16 7 C 0.14 1.69 5.51 86.38 0.48 2.17 16 8 C -0.10 -1.04 3.75 -10.27 -0.04 -1.08 16 9 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 10 C -0.12 -1.45 7.39 31.12 0.23 -1.22 16 11 C 0.11 2.12 4.24 45.52 0.19 2.31 16 12 H 0.10 2.31 7.46 -2.39 -0.02 2.29 16 13 N -0.70 -16.61 5.35 -440.04 -2.36 -18.96 16 14 C 0.53 19.18 7.85 87.66 0.69 19.87 16 15 O -0.57 -25.64 15.46 -3.02 -0.05 -25.68 16 16 C -0.13 -5.16 6.16 71.23 0.44 -4.72 16 17 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 18 C -0.55 -31.30 9.50 67.96 0.65 -30.66 16 19 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 20 C 0.01 0.83 5.49 84.86 0.47 1.29 16 21 N -0.91 -55.84 13.22 21.65 0.29 -55.56 16 22 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 23 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 24 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 C -0.14 -2.21 7.43 31.12 0.23 -1.98 16 27 C -0.15 -2.05 4.75 -10.79 -0.05 -2.11 16 28 C -0.19 -2.25 10.18 30.62 0.31 -1.94 16 29 C -0.16 -1.43 9.74 30.62 0.30 -1.13 16 30 H 0.08 0.23 7.56 -2.39 -0.02 0.22 16 31 H 0.08 0.31 7.29 -2.39 -0.02 0.30 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.41 2.45 7.89 -92.71 -0.73 1.72 16 34 H 0.06 0.90 7.85 -2.39 -0.02 0.88 16 35 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.10 1.01 8.08 -2.39 -0.02 0.99 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.42 7.09 8.73 -92.71 -0.81 6.28 16 39 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 40 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 41 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.09 1.37 7.90 -2.39 -0.02 1.35 16 44 H 0.09 1.68 7.47 -2.39 -0.02 1.66 16 45 H 0.10 1.04 8.05 -2.39 -0.02 1.02 16 46 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.11 0.62 7.61 -2.39 -0.02 0.60 16 Total: -1.00 -82.60 410.73 0.73 -81.87 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.57 Total: 19.38 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 5.13 Total: -11.08 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -4.59 Total: -85.22 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.09 Total: -41.00 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -82.60 0.73 -81.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736062794.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.316 kcal (2) G-P(sol) polarization free energy of solvation -82.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds