Wall clock time and date at job start Sat Apr 11 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99899 * 2 1 4 4 C 1.52997 * 109.47212 * 270.00188 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 N 1.46507 * 109.47485 * 179.97438 * 5 4 3 7 7 C 1.34770 * 119.99912 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00222 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.00019 * 180.02562 * 7 6 5 10 10 S 1.81002 * 109.47436 * 180.02562 * 9 7 6 11 11 C 1.76198 * 100.00092 * 180.02562 * 10 9 7 12 12 H 1.08004 * 120.00019 * 359.97438 * 11 10 9 13 13 C 1.38802 * 120.00251 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99707 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00286 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.47212 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47059 * 120.00037 * 15 13 11 18 18 H 1.48497 * 109.47665 * 240.00398 * 15 13 11 19 19 C 1.34773 * 120.00646 * 180.02562 * 2 1 3 20 20 O 1.21282 * 120.00692 * 179.97438 * 19 2 1 21 21 C 1.50705 * 119.99759 * 0.02562 * 19 2 1 22 22 C 1.52997 * 109.47283 * 180.02562 * 21 19 2 23 23 H 1.09004 * 110.34585 * 307.28536 * 22 21 19 24 24 C 1.51103 * 110.39040 * 69.69653 * 22 21 19 25 25 C 1.30516 * 111.10607 * 135.24625 * 24 22 21 26 26 C 1.51102 * 111.10731 * 0.02562 * 25 24 22 27 27 C 1.54633 * 104.72376 * 343.56011 * 26 25 24 28 28 H 1.08994 * 109.47405 * 90.00269 * 1 2 3 29 29 H 1.09006 * 109.46911 * 209.99921 * 1 2 3 30 30 H 1.08996 * 109.47170 * 329.99434 * 1 2 3 31 31 H 1.09002 * 109.47068 * 30.00248 * 3 2 1 32 32 H 1.09001 * 109.47372 * 150.00336 * 3 2 1 33 33 H 1.09002 * 109.47153 * 300.00008 * 4 3 2 34 34 H 1.08998 * 109.47533 * 59.99637 * 4 3 2 35 35 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 36 36 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 37 37 H 0.96992 * 119.99570 * 0.02562 * 6 5 4 38 38 H 1.09002 * 109.47210 * 300.00400 * 9 7 6 39 39 H 1.09001 * 109.47122 * 60.00417 * 9 7 6 40 40 H 0.96996 * 119.99880 * 179.97438 * 14 13 11 41 41 H 1.09006 * 109.46606 * 299.99889 * 21 19 2 42 42 H 1.08999 * 109.47462 * 59.99201 * 21 19 2 43 43 H 1.08002 * 124.44372 * 315.22726 * 24 22 21 44 44 H 1.08010 * 124.44881 * 180.02562 * 25 24 22 45 45 H 1.08998 * 110.38561 * 224.74962 * 26 25 24 46 46 H 1.09002 * 110.48551 * 102.42050 * 26 25 24 47 47 H 1.09000 * 111.03615 * 266.60346 * 27 26 25 48 48 H 1.08996 * 111.07477 * 142.68279 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2168 3.0358 -1.4425 6 7 3.4614 3.4584 -2.8238 7 6 4.1231 4.6064 -3.0700 8 8 4.5165 5.2894 -2.1482 9 6 4.3743 5.0415 -4.4908 10 16 5.2788 6.6094 -4.4908 11 6 5.4312 6.8747 -6.2261 12 1 5.0179 6.1579 -6.9203 13 6 6.0823 8.0048 -6.7009 14 7 6.5864 8.8781 -5.8547 15 14 6.2445 8.2857 -8.5404 16 1 5.5987 7.1656 -9.2711 17 1 5.5810 9.5627 -8.9065 18 1 7.6822 8.3522 -8.9063 19 6 2.1389 -1.1671 -0.0005 20 8 3.3517 -1.1671 -0.0010 21 6 1.3855 -2.4723 -0.0017 22 6 2.3798 -3.6351 -0.0014 23 1 3.0973 -3.5205 -0.8140 24 6 3.0944 -3.7165 1.3274 25 6 3.1528 -4.9482 1.7550 26 6 2.4875 -5.8940 0.7824 27 6 1.6331 -4.9831 -0.1295 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6083 2.0284 0.5139 32 1 3.1499 1.1385 0.5138 33 1 3.0415 0.9509 -1.9563 34 1 1.5000 1.8408 -1.9563 35 1 2.6273 3.7952 -0.9288 36 1 4.1692 2.9059 -0.9286 37 1 3.1466 2.9124 -3.5610 38 1 4.9641 4.2822 -5.0045 39 1 3.4219 5.1711 -5.0049 40 1 7.0418 9.6677 -6.1865 41 1 0.7585 -2.5306 0.8881 42 1 0.7591 -2.5295 -0.8919 43 1 3.5034 -2.8669 1.8541 44 1 3.6160 -5.2517 2.6824 45 1 1.8520 -6.6014 1.3151 46 1 3.2359 -6.4253 0.1944 47 1 0.6125 -4.9018 0.2445 48 1 1.6428 -5.3397 -1.1594 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737100074.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:28 Heat of formation + Delta-G solvation = -91.839948 kcal Electronic energy + Delta-G solvation = -25744.554016 eV Core-core repulsion = 21924.529055 eV Total energy + Delta-G solvation = -3820.024961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.20757 -40.60919 -39.29676 -37.25714 -36.01890 -34.59336 -33.44459 -32.21473 -30.63529 -29.78587 -27.89039 -27.62114 -27.20466 -25.19729 -22.88986 -21.84437 -21.36473 -20.30882 -19.83638 -19.42070 -18.08235 -17.81984 -17.53868 -16.97769 -16.89380 -16.82787 -16.68639 -16.44574 -15.87373 -15.66548 -15.53997 -14.77654 -14.51258 -14.43118 -14.26717 -13.87414 -13.55461 -13.44453 -13.25194 -13.16949 -13.06418 -12.91477 -12.79190 -12.75275 -12.68517 -12.63777 -12.57382 -12.07618 -12.00383 -11.80177 -11.72028 -11.69106 -11.16533 -11.03296 -10.73585 -10.28721 -10.15613 -9.79982 -9.67769 -8.68100 -8.35553 -6.13974 1.25804 1.37697 1.41212 1.46088 1.57346 1.58565 1.67052 2.00049 2.26135 2.34602 2.98733 3.31060 3.52039 3.73000 3.83250 3.87934 3.95785 3.99587 4.01870 4.17345 4.27529 4.32177 4.35584 4.44929 4.49036 4.51941 4.56481 4.58553 4.67206 4.72191 4.75293 4.81078 4.97376 4.98559 5.02836 5.05158 5.10690 5.11738 5.28888 5.40104 5.41442 5.43023 5.55087 5.68612 5.98199 6.19338 6.41677 6.47405 7.05769 7.21179 7.22734 8.74080 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022906 B = 0.001485 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.100630 B =18849.716261 C =19289.171874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.617 5.617 3 C 0.117 3.883 4 C -0.125 4.125 5 C 0.124 3.876 6 N -0.713 5.713 7 C 0.532 3.468 8 O -0.567 6.567 9 C -0.129 4.129 10 S -0.153 6.153 11 C -0.547 4.547 12 H 0.083 0.917 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.257 1.257 17 H -0.273 1.273 18 H -0.274 1.274 19 C 0.502 3.498 20 O -0.582 6.582 21 C -0.122 4.122 22 C -0.057 4.057 23 H 0.064 0.936 24 C -0.167 4.167 25 C -0.176 4.176 26 C -0.102 4.102 27 C -0.115 4.115 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.416 0.584 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.271 0.729 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.100 0.900 44 H 0.127 0.873 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.311 -31.097 12.358 39.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.349 5.349 3 C -0.007 4.007 4 C -0.164 4.164 5 C 0.000 4.000 6 N -0.367 5.367 7 C 0.318 3.682 8 O -0.445 6.445 9 C -0.281 4.281 10 S 0.074 5.926 11 C -0.694 4.694 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.822 3.178 16 H -0.180 1.180 17 H -0.198 1.198 18 H -0.200 1.200 19 C 0.292 3.708 20 O -0.462 6.462 21 C -0.161 4.161 22 C -0.076 4.076 23 H 0.083 0.917 24 C -0.185 4.185 25 C -0.194 4.194 26 C -0.139 4.139 27 C -0.152 4.152 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.253 0.747 38 H 0.126 0.874 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.118 0.882 44 H 0.145 0.855 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.109 0.891 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.987 -29.839 13.935 38.014 hybrid contribution 0.321 -0.149 -2.028 2.058 sum -18.666 -29.988 11.907 37.276 Atomic orbital electron populations 1.22137 0.76723 1.05037 1.03428 1.48012 1.08625 1.05179 1.73119 1.21322 0.97968 0.85581 0.95827 1.21952 1.01163 0.94652 0.98676 1.21258 0.99826 0.96486 0.82430 1.45741 1.58131 1.23032 1.09828 1.20100 0.77029 0.80965 0.90127 1.90691 1.51733 1.55044 1.47040 1.23372 1.05460 1.02439 0.96785 1.85588 1.72637 1.23338 1.11009 1.23247 1.43183 1.11522 0.91495 0.89869 1.26144 0.93914 0.94407 1.04688 1.70193 1.35931 1.11706 1.36977 0.84882 0.78240 0.78645 0.76024 1.18018 1.19808 1.19983 1.21418 0.87825 0.86744 0.74800 1.90715 1.16257 1.88022 1.51227 1.21781 0.98713 0.89336 1.06265 1.20832 0.96067 0.94947 0.95735 0.91737 1.23259 1.00627 0.97431 0.97168 1.23523 1.00795 0.95240 0.99837 1.21405 0.98707 0.97685 0.96130 1.22563 0.99362 0.92573 1.00691 0.91122 0.88961 0.89620 0.87869 0.92010 0.92205 0.88871 0.91207 0.93304 0.74726 0.87397 0.86921 0.91971 0.86712 0.86170 0.88156 0.85548 0.89764 0.90795 0.89053 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.24 10.28 127.77 1.31 1.56 16 2 N -0.62 -7.55 2.87 -846.77 -2.43 -9.98 16 3 C 0.12 1.74 5.45 86.38 0.47 2.21 16 4 C -0.13 -1.98 5.65 30.59 0.17 -1.80 16 5 C 0.12 2.84 5.67 86.38 0.49 3.33 16 6 N -0.71 -18.66 5.56 -463.06 -2.57 -21.23 16 7 C 0.53 20.25 7.85 87.66 0.69 20.94 16 8 O -0.57 -27.08 15.86 -3.05 -0.05 -27.13 16 9 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 10 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 11 C -0.55 -31.58 9.50 67.95 0.65 -30.94 16 12 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 13 C 0.01 0.75 5.49 84.86 0.47 1.22 16 14 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 15 Si 1.00 43.93 29.55 68.60 2.03 45.96 16 16 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 17 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 18 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 19 C 0.50 8.46 7.47 87.66 0.66 9.12 16 20 O -0.58 -15.67 14.50 -3.04 -0.04 -15.71 16 21 C -0.12 -1.12 3.65 29.85 0.11 -1.01 16 22 C -0.06 -0.76 2.52 -10.86 -0.03 -0.79 16 23 H 0.06 1.18 7.90 -2.38 -0.02 1.16 16 24 C -0.17 -2.81 9.26 26.27 0.24 -2.56 16 25 C -0.18 -2.40 10.77 26.27 0.28 -2.11 16 26 C -0.10 -0.97 6.81 30.53 0.21 -0.77 16 27 C -0.11 -0.89 6.71 31.70 0.21 -0.68 16 28 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.09 0.00 6.44 -2.38 -0.02 -0.02 16 30 H 0.09 0.16 7.89 -2.39 -0.02 0.14 16 31 H 0.10 1.07 7.89 -2.39 -0.02 1.05 16 32 H 0.06 1.27 7.42 -2.39 -0.02 1.25 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.42 7.95 8.47 -92.71 -0.79 7.17 16 38 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 39 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 40 H 0.27 15.55 8.31 -92.71 -0.77 14.77 16 41 H 0.11 0.60 7.38 -2.38 -0.02 0.58 16 42 H 0.12 0.49 8.11 -2.39 -0.02 0.47 16 43 H 0.10 2.11 7.59 -2.91 -0.02 2.09 16 44 H 0.13 1.49 8.06 -2.91 -0.02 1.47 16 45 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.09 0.39 7.91 -2.39 -0.02 0.37 16 48 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -85.67 409.32 2.58 -83.09 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.16 Total: 18.14 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 6.37 Total: -7.08 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -4.72 Total: -87.46 kcal Atomic # 8 Polarization: -42.75 SS G_CDS: -0.09 Total: -42.84 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -85.67 2.58 -83.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737100074.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.753 kcal (2) G-P(sol) polarization free energy of solvation -85.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds