Wall clock time and date at job start Sat Apr 11 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.47730 * 2 1 4 4 C 1.50702 * 109.47079 * 120.00569 * 2 1 3 5 5 O 1.21278 * 119.99815 * 119.99466 * 4 2 1 6 6 N 1.34776 * 119.99728 * 299.99447 * 4 2 1 7 7 C 1.46497 * 119.99532 * 179.97438 * 6 4 2 8 8 H 1.08998 * 112.85403 * 23.81034 * 7 6 4 9 9 C 1.53793 * 113.61160 * 155.00131 * 7 6 4 10 10 C 1.53781 * 87.07845 * 89.11793 * 9 7 6 11 11 H 1.09002 * 113.61228 * 139.98223 * 10 9 7 12 12 N 1.46500 * 113.61339 * 270.80169 * 10 9 7 13 13 C 1.34781 * 119.99985 * 203.47543 * 12 10 9 14 14 O 1.21280 * 119.99799 * 359.97438 * 13 12 10 15 15 C 1.50701 * 119.99932 * 179.97438 * 13 12 10 16 16 S 1.81003 * 109.46939 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99859 * 179.97438 * 16 15 13 18 18 H 1.08000 * 120.00276 * 0.02562 * 17 16 15 19 19 C 1.38804 * 119.99756 * 179.97438 * 17 16 15 20 20 N 1.31621 * 120.00162 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99867 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46886 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47049 * 120.00173 * 21 19 17 24 24 H 1.48498 * 109.47209 * 240.00389 * 21 19 17 25 25 C 1.53777 * 113.61724 * 252.49827 * 7 6 4 26 26 C 1.53005 * 109.46717 * 240.00246 * 2 1 3 27 27 C 1.53785 * 113.61393 * 159.13939 * 26 2 1 28 28 C 1.53954 * 87.01679 * 220.04809 * 27 26 2 29 29 C 1.53780 * 87.11604 * 25.36276 * 28 27 26 30 30 H 1.09007 * 109.46376 * 299.99954 * 1 2 3 31 31 H 1.09001 * 109.46722 * 59.99498 * 1 2 3 32 32 H 1.08992 * 109.47229 * 179.97438 * 1 2 3 33 33 H 0.96998 * 119.99873 * 359.97438 * 6 4 2 34 34 H 1.09000 * 113.61258 * 334.56928 * 9 7 6 35 35 H 1.08997 * 113.61168 * 203.66749 * 9 7 6 36 36 H 0.96998 * 120.00149 * 23.46564 * 12 10 9 37 37 H 1.08997 * 109.46730 * 299.99650 * 15 13 12 38 38 H 1.08994 * 109.46768 * 60.00057 * 15 13 12 39 39 H 0.96996 * 120.00425 * 179.97438 * 20 19 17 40 40 H 1.08999 * 113.61947 * 156.34089 * 25 7 6 41 41 H 1.08997 * 113.61348 * 25.43304 * 25 7 6 42 42 H 1.09001 * 112.84832 * 290.33332 * 26 2 1 43 43 H 1.09000 * 113.61022 * 334.56436 * 27 26 2 44 44 H 1.08998 * 113.61411 * 105.47143 * 27 26 2 45 45 H 1.09000 * 113.53651 * 270.80911 * 28 27 26 46 46 H 1.09002 * 113.66229 * 139.93665 * 28 27 26 47 47 H 1.08990 * 113.61650 * 220.09219 * 29 28 27 48 48 H 1.09003 * 113.61528 * 89.18292 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1190 6 7 1.7068 -0.2501 2.4545 7 6 2.1947 -0.9412 3.6506 8 1 3.0998 -1.5196 3.4656 9 6 2.2845 -0.0366 4.8911 10 6 0.8295 -0.4347 5.1896 11 1 0.6319 -0.6055 6.2479 12 7 -0.1601 0.4435 4.5605 13 6 -1.4021 0.5372 5.0755 14 8 -1.7006 -0.1060 6.0594 15 6 -2.4198 1.4410 4.4287 16 16 -3.9780 1.3482 5.3452 17 6 -4.9559 2.4684 4.4000 18 1 -4.5298 2.9650 3.5408 19 6 -6.2744 2.7119 4.7592 20 7 -6.7939 2.1064 5.8060 21 14 -7.3111 3.9001 3.7576 22 1 -6.4988 4.4450 2.6401 23 1 -8.4914 3.1856 3.2085 24 1 -7.7671 5.0138 4.6275 25 6 1.1027 -1.7245 4.3980 26 6 2.0400 -0.7212 -1.2493 27 6 3.4867 -0.3577 -1.6232 28 6 3.0232 -0.3619 -3.0913 29 6 1.6120 -0.0508 -2.5655 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.1495 0.5388 2.5435 34 1 2.4081 1.0199 4.6530 35 1 2.9957 -0.3892 5.6380 36 1 0.0786 0.9577 3.7734 37 1 -2.0526 2.4672 4.4386 38 1 -2.5849 1.1240 3.3991 39 1 -7.7152 2.2768 6.0572 40 1 1.4907 -2.5386 5.0102 41 1 0.2721 -2.0306 3.7619 42 1 1.8519 -1.7946 -1.2248 43 1 3.7963 0.6245 -1.2659 44 1 4.2079 -1.1409 -1.3898 45 1 3.1053 -1.3372 -3.5709 46 1 3.4538 0.4421 -3.6883 47 1 0.8221 -0.5866 -3.0917 48 1 1.4081 1.0154 -2.4663 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001737469674.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:32 Heat of formation + Delta-G solvation = -41.740568 kcal Electronic energy + Delta-G solvation = -27315.483891 eV Core-core repulsion = 23497.631402 eV Total energy + Delta-G solvation = -3817.852489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02544 -39.91301 -38.62541 -37.72537 -34.06161 -33.31773 -32.47188 -32.27137 -29.18607 -26.52758 -26.01212 -25.59753 -25.53374 -24.93746 -23.10546 -21.09414 -20.15869 -19.99187 -19.62299 -17.90625 -17.42343 -16.59080 -16.33654 -16.01593 -15.62412 -15.35870 -15.23387 -15.01878 -14.84422 -14.56682 -14.26078 -13.90921 -13.45273 -13.24562 -12.97698 -12.94139 -12.80830 -12.66706 -12.63012 -12.43640 -12.11481 -11.97625 -11.90400 -11.54798 -11.10770 -11.06668 -11.01159 -10.84646 -10.81251 -10.67661 -10.58747 -10.43049 -9.88321 -9.85133 -9.50502 -9.31748 -9.12066 -8.98569 -8.28645 -6.55075 -6.25947 -3.96905 2.38982 2.68817 2.96900 3.00776 3.18504 3.25044 3.28962 3.61056 4.15238 4.16239 4.19154 4.27241 4.31978 4.36303 4.54616 4.62992 4.71559 4.84943 4.86497 4.99345 5.04063 5.06246 5.09535 5.36980 5.39751 5.41103 5.42194 5.44037 5.48727 5.51158 5.52579 5.61274 5.64286 5.69151 5.76609 5.79226 5.83661 5.86816 5.90212 5.97979 6.04490 6.22004 6.27454 6.58313 7.17722 7.53470 7.55973 7.96548 8.30918 8.50049 9.19558 10.81510 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010619 B = 0.002678 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.247776 B =10454.753398 C =12765.601734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.103 4.103 3 H 0.097 0.903 4 C 0.523 3.477 5 O -0.534 6.534 6 N -0.714 5.714 7 C 0.118 3.882 8 H 0.105 0.895 9 C -0.153 4.153 10 C 0.122 3.878 11 H 0.106 0.894 12 N -0.722 5.722 13 C 0.535 3.465 14 O -0.511 6.511 15 C -0.155 4.155 16 S -0.058 6.058 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.165 4.165 26 C -0.088 4.088 27 C -0.133 4.133 28 C -0.144 4.144 29 C -0.136 4.136 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.394 0.606 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.388 0.612 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.824 -2.716 -13.042 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 H 0.115 0.885 4 C 0.309 3.691 5 O -0.410 6.410 6 N -0.367 5.367 7 C 0.012 3.988 8 H 0.123 0.877 9 C -0.192 4.192 10 C 0.016 3.984 11 H 0.124 0.876 12 N -0.377 5.377 13 C 0.321 3.679 14 O -0.384 6.384 15 C -0.305 4.305 16 S 0.168 5.832 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.205 4.205 26 C -0.107 4.107 27 C -0.171 4.171 28 C -0.181 4.181 29 C -0.174 4.174 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.097 0.903 35 H 0.127 0.873 36 H 0.223 0.777 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.658 -4.529 -11.357 24.871 hybrid contribution -0.551 2.162 -2.022 3.011 sum 21.107 -2.367 -13.379 25.102 Atomic orbital electron populations 1.21780 0.92355 1.03200 1.03007 1.21405 0.97799 1.00455 0.92728 0.88508 1.20714 0.79508 0.84452 0.84382 1.90686 1.37570 1.26053 1.86689 1.45870 1.53733 1.31734 1.05365 1.21943 0.98216 0.94647 0.83972 0.87713 1.23721 0.97116 1.00690 0.97698 1.21851 0.87403 0.90323 0.98867 0.87558 1.45830 1.12071 1.47333 1.32468 1.20353 0.81751 0.81948 0.83839 1.90712 1.78182 1.44234 1.25246 1.23545 1.01567 1.00946 1.04476 1.85445 0.99550 1.59627 1.38535 1.22891 0.99173 1.29977 1.16330 0.90872 1.24998 0.96885 0.96334 0.95383 1.70017 1.14816 1.40819 1.24558 0.86116 0.79702 0.80062 0.79607 1.19606 1.20553 1.20550 1.23916 0.99411 0.97719 0.99430 1.22363 0.96257 1.00331 0.91723 1.22939 0.96652 1.01655 0.95837 1.22836 0.96850 1.01813 0.96597 1.22967 0.97165 1.00929 0.96314 0.92085 0.90945 0.91809 0.76945 0.90314 0.87293 0.77662 0.89164 0.89242 0.92188 0.88216 0.90451 0.88468 0.90516 0.91221 0.90273 0.91554 0.91334 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.91 37.16 0.33 -0.76 16 2 C -0.10 -0.79 2.45 -91.77 -0.23 -1.01 16 3 H 0.10 0.59 7.98 -51.93 -0.41 0.18 16 4 C 0.52 5.27 7.13 -10.98 -0.08 5.19 16 5 O -0.53 -7.23 15.42 5.56 0.09 -7.14 16 6 N -0.71 -6.08 5.03 -53.02 -0.27 -6.35 16 7 C 0.12 1.04 4.32 -67.12 -0.29 0.75 16 8 H 0.10 1.01 7.46 -51.93 -0.39 0.62 16 9 C -0.15 -1.15 7.58 -25.91 -0.20 -1.35 16 10 C 0.12 1.30 4.30 -67.12 -0.29 1.02 16 11 H 0.11 1.33 7.50 -51.93 -0.39 0.94 16 12 N -0.72 -8.71 5.12 -53.01 -0.27 -8.98 16 13 C 0.53 9.37 7.85 -10.98 -0.09 9.29 16 14 O -0.51 -11.13 15.48 5.56 0.09 -11.04 16 15 C -0.15 -2.94 6.16 36.01 0.22 -2.72 16 16 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 17 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 20 N -0.87 -25.75 13.22 55.49 0.73 -25.01 16 21 Si 0.92 20.97 29.55 -169.99 -5.02 15.94 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C -0.16 -1.67 7.68 -25.92 -0.20 -1.87 16 26 C -0.09 -0.71 2.51 -89.80 -0.23 -0.94 16 27 C -0.13 -1.04 7.54 -25.83 -0.19 -1.24 16 28 C -0.14 -0.96 8.09 -25.83 -0.21 -1.17 16 29 C -0.14 -0.91 6.75 -25.92 -0.17 -1.08 16 30 H 0.06 0.43 7.57 -51.93 -0.39 0.03 16 31 H 0.07 0.47 7.50 -51.93 -0.39 0.08 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.39 2.73 5.57 -40.82 -0.23 2.51 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.39 3.54 6.17 -40.82 -0.25 3.29 16 37 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 38 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 39 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.10 0.95 7.91 -51.93 -0.41 0.54 16 43 H 0.08 0.55 7.99 -51.93 -0.41 0.14 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 401.39 15.07 6.05 6.05 Total: -1.00 -35.04 401.39 -10.13 -45.17 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.89 Total: 3.60 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -1.42 Total: -8.49 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.20 Total: -40.35 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: 0.17 Total: -18.19 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.04 -10.13 -45.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737469674.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.432 kcal (2) G-P(sol) polarization free energy of solvation -35.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds