Wall clock time and date at job start Sat Apr 11 2020 06:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.46817 * 2 1 4 4 C 1.50705 * 109.47117 * 240.00509 * 2 1 3 5 5 O 1.21278 * 119.99831 * 239.99908 * 4 2 1 6 6 N 1.34771 * 119.99965 * 59.99775 * 4 2 1 7 7 C 1.46507 * 119.99930 * 179.97438 * 6 4 2 8 8 H 1.08999 * 112.84685 * 336.19348 * 7 6 4 9 9 C 1.53951 * 113.66565 * 107.44105 * 7 6 4 10 10 C 1.53780 * 87.02052 * 139.93341 * 9 7 6 11 11 H 1.09003 * 113.61709 * 89.22691 * 10 9 7 12 12 N 1.46500 * 113.61457 * 220.05002 * 10 9 7 13 13 C 1.34776 * 119.99472 * 254.13347 * 12 10 9 14 14 O 1.21280 * 120.00458 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99564 * 180.02562 * 13 12 10 16 16 S 1.81008 * 109.46925 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99767 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00286 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99642 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00322 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99881 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47261 * 239.99700 * 21 19 17 24 24 H 1.48500 * 109.47454 * 119.99693 * 21 19 17 25 25 C 1.53775 * 113.61221 * 204.99955 * 7 6 4 26 26 C 1.52993 * 109.47238 * 120.00227 * 2 1 3 27 27 C 1.53775 * 113.61744 * 277.49915 * 26 2 1 28 28 C 1.53785 * 87.08454 * 220.01828 * 27 26 2 29 29 C 1.53782 * 113.61473 * 180.02562 * 26 2 1 30 30 H 1.08997 * 109.47237 * 299.99538 * 1 2 3 31 31 H 1.09001 * 109.47302 * 60.00103 * 1 2 3 32 32 H 1.09005 * 109.47060 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00557 * 359.97438 * 6 4 2 34 34 H 1.09003 * 113.61527 * 25.41302 * 9 7 6 35 35 H 1.08995 * 113.66671 * 254.45938 * 9 7 6 36 36 H 0.96999 * 120.00150 * 74.13975 * 12 10 9 37 37 H 1.08998 * 109.47573 * 60.00437 * 15 13 12 38 38 H 1.09000 * 109.46955 * 299.99406 * 15 13 12 39 39 H 0.97004 * 120.00251 * 0.02562 * 20 19 17 40 40 H 1.09003 * 113.61646 * 105.47363 * 25 7 6 41 41 H 1.09004 * 113.62093 * 334.56650 * 25 7 6 42 42 H 1.09006 * 112.84856 * 48.80616 * 26 2 1 43 43 H 1.09005 * 113.61336 * 334.57035 * 27 26 2 44 44 H 1.09001 * 113.61694 * 105.46999 * 27 26 2 45 45 H 1.08998 * 113.60906 * 270.88351 * 28 27 26 46 46 H 1.09000 * 113.61187 * 139.97846 * 28 27 26 47 47 H 1.09001 * 113.61231 * 254.52866 * 29 26 2 48 48 H 1.08995 * 113.61690 * 25.43372 * 29 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 8 2.7296 -1.6964 -1.1193 6 7 1.7067 -0.2498 -2.4546 7 6 2.1955 -0.9400 -3.6509 8 1 3.1011 -1.5177 -3.4658 9 6 1.1044 -1.7266 -4.3997 10 6 1.7513 -1.2273 -5.7024 11 1 2.5350 -1.8839 -6.0804 12 7 0.7805 -0.8488 -6.7323 13 6 0.5845 -1.6480 -7.7997 14 8 1.2120 -2.6802 -7.9079 15 6 -0.4138 -1.2584 -8.8593 16 16 -0.4480 -2.5259 -10.1511 17 6 -1.6619 -1.8351 -11.2253 18 1 -2.1292 -0.8936 -10.9776 19 6 -2.0174 -2.5012 -12.3901 20 7 -1.4475 -3.6485 -12.6923 21 14 -3.3037 -1.7686 -13.5294 22 1 -3.7876 -0.4819 -12.9674 23 1 -4.4439 -2.7111 -13.6598 24 1 -2.7029 -1.5305 -14.8663 25 6 2.2848 -0.0350 -4.8909 26 6 2.0400 -0.7213 1.2491 27 6 2.0720 0.1674 2.5037 28 6 3.4108 -0.5054 2.8502 29 6 3.5738 -0.7763 1.3457 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1487 0.5386 -2.5436 34 1 0.0981 -1.3409 -4.2362 35 1 1.1722 -2.8059 -4.2643 36 1 0.2789 -0.0231 -6.6459 37 1 -0.1258 -0.3021 -9.2958 38 1 -1.4035 -1.1701 -8.4112 39 1 -0.7792 -4.0288 -12.1009 40 1 3.3044 0.2493 -5.1515 41 1 1.6019 0.8141 -4.8620 42 1 1.5573 -1.6857 1.4077 43 1 2.1620 1.2311 2.2832 44 1 1.2759 -0.0525 3.2150 45 1 3.3027 -1.4104 3.4480 46 1 4.1539 0.1829 3.2528 47 1 3.9904 -1.7583 1.1217 48 1 4.0743 0.0294 0.8087 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001737469675.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:35 Heat of formation + Delta-G solvation = -80.461043 kcal Electronic energy + Delta-G solvation = -26225.521744 eV Core-core repulsion = 22405.990209 eV Total energy + Delta-G solvation = -3819.531535 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.63197 -40.89497 -39.64553 -38.61351 -35.35831 -34.74823 -34.34076 -33.03844 -30.74849 -27.12800 -26.93290 -26.79547 -26.25103 -25.71930 -23.60722 -21.87729 -21.35411 -20.92404 -20.39526 -20.27057 -18.16010 -18.04793 -17.89315 -16.97898 -16.57853 -16.41012 -16.14550 -16.12100 -15.86135 -15.70711 -15.40631 -14.96769 -14.59118 -14.46860 -14.17183 -13.86354 -13.75295 -13.52780 -13.51241 -13.35825 -13.25887 -13.08202 -12.75994 -12.61437 -12.40626 -12.35410 -12.15229 -11.98641 -11.92055 -11.54671 -11.42883 -11.30322 -11.11719 -11.03272 -10.97042 -10.53797 -10.31697 -10.19731 -9.95690 -8.92663 -8.87149 -6.27909 1.20355 1.49341 1.52186 1.62378 1.67048 1.78422 2.04050 2.32486 2.40181 3.02709 3.14016 3.34402 3.50637 3.57721 3.72717 3.74893 3.82080 3.84804 3.90078 4.00452 4.08416 4.18607 4.31135 4.38026 4.39373 4.43290 4.58652 4.63346 4.66471 4.84373 4.85257 4.86813 4.89718 4.95566 4.96714 5.04831 5.05879 5.10882 5.20765 5.31838 5.41689 5.43466 5.57611 5.63017 5.65070 6.14677 6.44808 6.60374 7.06417 7.17622 7.31608 8.50880 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035312 B = 0.001556 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.745602 B =17993.831837 C =18351.292422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.121 0.879 4 C 0.511 3.489 5 O -0.579 6.579 6 N -0.705 5.705 7 C 0.130 3.870 8 H 0.097 0.903 9 C -0.162 4.162 10 C 0.116 3.884 11 H 0.090 0.910 12 N -0.695 5.695 13 C 0.533 3.467 14 O -0.568 6.568 15 C -0.109 4.109 16 S -0.201 6.201 17 C -0.612 4.612 18 H 0.076 0.924 19 C -0.020 4.020 20 N -0.915 5.915 21 Si 1.142 2.858 22 H -0.261 1.261 23 H -0.276 1.276 24 H -0.275 1.275 25 C -0.124 4.124 26 C -0.095 4.095 27 C -0.122 4.122 28 C -0.146 4.146 29 C -0.131 4.131 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.044 0.956 33 H 0.417 0.583 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.420 0.580 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.261 0.739 40 H 0.092 0.908 41 H 0.125 0.875 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.043 0.957 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 18.348 31.788 36.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.139 0.861 4 C 0.299 3.701 5 O -0.458 6.458 6 N -0.357 5.357 7 C 0.024 3.976 8 H 0.115 0.885 9 C -0.202 4.202 10 C 0.010 3.990 11 H 0.109 0.891 12 N -0.348 5.348 13 C 0.318 3.682 14 O -0.446 6.446 15 C -0.260 4.260 16 S 0.025 5.975 17 C -0.760 4.760 18 H 0.095 0.905 19 C -0.223 4.223 20 N -0.550 5.550 21 Si 0.960 3.040 22 H -0.185 1.185 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.162 4.162 26 C -0.114 4.114 27 C -0.159 4.159 28 C -0.183 4.183 29 C -0.168 4.168 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.255 0.745 34 H 0.122 0.878 35 H 0.069 0.931 36 H 0.258 0.742 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.143 0.857 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.062 0.938 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.077 15.709 30.321 34.524 hybrid contribution -0.046 1.113 1.156 1.605 sum 5.031 16.822 31.477 36.043 Atomic orbital electron populations 1.21768 0.91445 1.02330 1.04271 1.21406 0.98445 1.00939 0.90749 0.86089 1.21335 0.78969 0.84062 0.85725 1.90702 1.39581 1.28170 1.87356 1.45834 1.53330 1.32109 1.04414 1.22046 0.97151 0.94836 0.83568 0.88506 1.24003 1.00536 1.00510 0.95126 1.22288 0.91902 0.98977 0.85792 0.89141 1.45607 1.42815 1.25307 1.21106 1.20094 0.82183 0.83395 0.82487 1.90701 1.49511 1.26453 1.77978 1.23234 1.02217 1.03274 0.97306 1.85130 1.55796 1.32924 1.23608 1.24088 1.27777 1.12519 1.11591 0.90531 1.27842 1.01512 0.94377 0.98541 1.70861 1.26095 1.18663 1.39402 0.82646 0.72445 0.75419 0.73483 1.18522 1.20115 1.20061 1.23638 1.04018 0.96864 0.91724 1.22358 0.96091 0.98974 0.93967 1.22938 0.97398 0.99484 0.96076 1.22860 0.98561 1.01041 0.95868 1.22795 0.96377 1.00893 0.96782 0.89697 0.90503 0.93689 0.74494 0.87841 0.93088 0.74188 0.86739 0.86896 0.92850 0.88899 0.85720 0.90700 0.88479 0.90634 0.90585 0.90743 0.93845 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.08 71.98 0.65 -0.23 16 2 C -0.09 -0.89 2.48 -11.54 -0.03 -0.92 16 3 H 0.12 0.58 7.94 -2.39 -0.02 0.56 16 4 C 0.51 8.31 6.96 87.66 0.61 8.92 16 5 O -0.58 -15.14 14.45 -3.02 -0.04 -15.18 16 6 N -0.70 -7.88 5.25 -439.76 -2.31 -10.18 16 7 C 0.13 1.98 4.24 45.57 0.19 2.17 16 8 H 0.10 1.97 7.46 -2.39 -0.02 1.95 16 9 C -0.16 -3.04 7.69 31.18 0.24 -2.80 16 10 C 0.12 2.35 4.21 45.52 0.19 2.54 16 11 H 0.09 2.40 7.50 -2.39 -0.02 2.39 16 12 N -0.70 -15.44 5.36 -440.03 -2.36 -17.80 16 13 C 0.53 18.81 7.85 87.66 0.69 19.50 16 14 O -0.57 -26.04 15.48 -3.03 -0.05 -26.09 16 15 C -0.11 -4.15 6.16 71.24 0.44 -3.71 16 16 S -0.20 -11.03 19.60 -56.49 -1.11 -12.14 16 17 C -0.61 -35.04 9.50 67.95 0.65 -34.39 16 18 H 0.08 4.09 7.80 -2.91 -0.02 4.07 16 19 C -0.02 -1.14 5.49 84.86 0.47 -0.67 16 20 N -0.91 -58.21 13.67 21.65 0.30 -57.92 16 21 Si 1.14 49.07 29.92 68.60 2.05 51.12 16 22 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 23 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 25 C -0.12 -1.36 7.58 31.12 0.24 -1.12 16 26 C -0.10 -1.20 2.72 -10.27 -0.03 -1.23 16 27 C -0.12 -0.97 7.63 31.12 0.24 -0.73 16 28 C -0.15 -1.59 8.08 31.11 0.25 -1.34 16 29 C -0.13 -2.01 6.19 31.11 0.19 -1.82 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.23 7.56 -2.39 -0.02 0.21 16 32 H 0.04 0.45 8.14 -2.38 -0.02 0.44 16 33 H 0.42 1.70 8.14 -92.71 -0.76 0.95 16 34 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.23 16 36 H 0.42 5.84 8.71 -92.71 -0.81 5.03 16 37 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 38 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 39 H 0.26 17.29 7.13 -92.70 -0.66 16.63 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.12 0.59 8.09 -2.38 -0.02 0.57 16 42 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.10 0.48 7.96 -2.38 -0.02 0.46 16 44 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.04 0.90 7.97 -2.39 -0.02 0.89 16 48 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -85.56 404.85 0.98 -84.58 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -0.49 Total: 19.47 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 4.99 Total: -15.86 kcal Atomic # 7 Polarization: -81.52 SS G_CDS: -4.37 Total: -85.90 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -0.09 Total: -41.27 kcal Atomic # 14 Polarization: 49.07 SS G_CDS: 2.05 Total: 51.12 kcal Atomic # 16 Polarization: -11.03 SS G_CDS: -1.11 Total: -12.14 kcal Total: -85.56 0.98 -84.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001737469675.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.116 kcal (2) G-P(sol) polarization free energy of solvation -85.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds