Wall clock time and date at job start Sat Apr 11 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47283 * 2 1 4 4 C 1.34774 * 119.99881 * 268.42761 * 3 2 1 5 5 O 1.21280 * 119.99527 * 180.02562 * 4 3 2 6 6 C 1.50694 * 120.00376 * 0.02562 * 4 3 2 7 7 C 1.53780 * 113.61389 * 277.49945 * 6 4 3 8 8 C 1.53787 * 87.07761 * 220.01451 * 7 6 4 9 9 C 1.53780 * 87.08311 * 25.43020 * 8 7 6 10 10 C 1.46497 * 119.99697 * 88.43246 * 3 2 1 11 11 H 1.08997 * 110.64429 * 359.02814 * 10 3 2 12 12 C 1.55149 * 110.72142 * 122.17616 * 10 3 2 13 13 C 1.54917 * 101.58564 * 154.04008 * 12 10 3 14 14 N 1.47422 * 104.82698 * 322.99269 * 13 12 10 15 15 C 1.34780 * 125.64806 * 204.08768 * 14 13 12 16 16 O 1.21283 * 120.00318 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99645 * 0.02704 * 15 14 13 18 18 S 1.81002 * 109.46840 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00026 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99644 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00064 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00414 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46751 * 269.99968 * 23 21 19 25 25 H 1.48500 * 109.47298 * 29.99743 * 23 21 19 26 26 H 1.48497 * 109.46999 * 150.00327 * 23 21 19 27 27 C 1.47020 * 108.70842 * 24.35338 * 14 13 12 28 28 H 1.09001 * 109.47855 * 184.66629 * 1 2 3 29 29 H 1.09004 * 109.47227 * 304.66333 * 1 2 3 30 30 H 1.09001 * 109.47121 * 64.66197 * 1 2 3 31 31 H 1.09008 * 109.46855 * 240.00085 * 2 1 3 32 32 H 1.09005 * 109.47233 * 119.99991 * 2 1 3 33 33 H 1.09002 * 112.84541 * 48.80074 * 6 4 3 34 34 H 1.08997 * 113.61340 * 334.56207 * 7 6 4 35 35 H 1.09000 * 113.61801 * 105.46859 * 7 6 4 36 36 H 1.08998 * 113.61662 * 270.88456 * 8 7 6 37 37 H 1.09008 * 113.68851 * 139.98870 * 8 7 6 38 38 H 1.08993 * 113.61655 * 220.01774 * 9 8 7 39 39 H 1.09006 * 113.61503 * 89.11345 * 9 8 7 40 40 H 1.09004 * 111.00409 * 35.96577 * 12 10 3 41 41 H 1.09001 * 111.04023 * 272.12387 * 12 10 3 42 42 H 1.08991 * 110.36824 * 204.15359 * 13 12 10 43 43 H 1.08997 * 110.46063 * 81.87064 * 13 12 10 44 44 H 1.09002 * 109.47290 * 59.99941 * 17 15 14 45 45 H 1.08997 * 109.47408 * 299.99647 * 17 15 14 46 46 H 0.96995 * 120.00624 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.88393 * 118.12647 * 27 14 13 48 48 H 1.08999 * 109.88635 * 239.30028 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2731 2.0059 -1.1668 5 8 2.6779 3.1491 -1.1667 6 6 2.0552 1.2838 -2.4714 7 6 3.2270 0.3733 -2.8747 8 6 3.0067 0.8610 -4.3165 9 6 2.3913 2.1325 -3.7089 10 6 2.2297 2.0833 1.2683 11 1 1.9613 1.4452 2.1102 12 6 3.6996 2.5646 1.3909 13 6 3.5521 3.7746 2.3470 14 7 2.2798 4.4097 1.9581 15 6 1.9500 5.6998 2.1664 16 8 0.8702 6.1160 1.8032 17 6 2.9230 6.6252 2.8505 18 16 2.1946 8.2771 2.9808 19 6 3.5063 9.1265 3.7949 20 1 4.4135 8.5996 4.0517 21 6 3.3738 10.4726 4.1060 22 7 2.2681 11.1147 3.7934 23 14 4.7648 11.3733 4.9683 24 1 4.5842 11.2708 6.4387 25 1 6.0628 10.7621 4.5853 26 1 4.7529 12.8028 4.5666 27 6 1.4276 3.4012 1.3113 28 1 -0.3635 -1.0242 0.0836 29 1 -0.3634 0.5845 0.8453 30 1 -0.3633 0.4398 -0.9288 31 1 1.8932 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.0820 0.7960 -2.5276 34 1 4.1836 0.6796 -2.4516 35 1 3.0226 -0.6884 -2.7369 36 1 2.2944 0.2564 -4.8779 37 1 3.9319 1.0422 -4.8637 38 1 1.5122 2.4910 -4.2444 39 1 3.1195 2.9198 -3.5137 40 1 4.0905 2.8772 0.4226 41 1 4.3288 1.7920 1.8329 42 1 4.3804 4.4695 2.2100 43 1 3.5071 3.4384 3.3828 44 1 3.8433 6.6792 2.2689 45 1 3.1452 6.2460 3.8479 46 1 2.1756 12.0555 4.0105 47 1 0.5137 3.2625 1.8890 48 1 1.1833 3.7175 0.2972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738081888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:17 Heat of formation + Delta-G solvation = -42.295788 kcal Electronic energy + Delta-G solvation = -27873.934534 eV Core-core repulsion = 24056.057969 eV Total energy + Delta-G solvation = -3817.876565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.13552 -39.47494 -38.08167 -36.68341 -35.89009 -32.37727 -31.89297 -30.17871 -29.58175 -28.33108 -26.63330 -26.01458 -25.41908 -23.75938 -23.34904 -22.04056 -20.18445 -19.26770 -19.01729 -17.78214 -17.44775 -16.86303 -16.30307 -15.97797 -15.74883 -15.09611 -14.88438 -14.75638 -14.70982 -14.27424 -13.97093 -13.82665 -13.40464 -13.24808 -13.18901 -12.83240 -12.80882 -12.49585 -12.48383 -12.38182 -12.14373 -11.87982 -11.71793 -11.62588 -11.55570 -11.48662 -11.08576 -11.01835 -10.96501 -10.89357 -10.77192 -10.71277 -9.75911 -9.64275 -9.30365 -9.01451 -8.96294 -8.34316 -8.15786 -6.43374 -6.16050 -3.86040 2.35344 2.53194 3.08179 3.21077 3.26038 3.31010 3.35367 3.72585 4.07450 4.15611 4.19099 4.25404 4.35829 4.41041 4.44004 4.46657 4.66667 4.80393 4.84266 4.92938 5.04948 5.11917 5.18310 5.18737 5.22927 5.24640 5.31290 5.36291 5.40970 5.48410 5.56135 5.61321 5.62578 5.69782 5.70782 5.74075 5.76789 5.89234 5.95266 6.05323 6.08025 6.22515 6.39662 6.55083 7.08613 7.64796 7.80299 7.97198 8.40783 8.69664 9.28911 10.91461 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.002326 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.801125 B =12036.284108 C =12445.374814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.105 3.895 3 N -0.607 5.607 4 C 0.520 3.480 5 O -0.515 6.515 6 C -0.139 4.139 7 C -0.122 4.122 8 C -0.142 4.142 9 C -0.119 4.119 10 C 0.137 3.863 11 H 0.103 0.897 12 C -0.145 4.145 13 C 0.106 3.894 14 N -0.618 5.618 15 C 0.549 3.451 16 O -0.517 6.517 17 C -0.145 4.145 18 S -0.061 6.061 19 C -0.533 4.533 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.272 1.272 26 H -0.282 1.282 27 C 0.105 3.895 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.268 0.732 47 H 0.063 0.937 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.726 -30.857 -10.895 32.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.018 4.018 3 N -0.341 5.341 4 C 0.308 3.692 5 O -0.390 6.390 6 C -0.160 4.160 7 C -0.160 4.160 8 C -0.179 4.179 9 C -0.157 4.157 10 C 0.033 3.967 11 H 0.121 0.879 12 C -0.184 4.184 13 C -0.018 4.018 14 N -0.355 5.355 15 C 0.338 3.662 16 O -0.391 6.391 17 C -0.295 4.295 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.197 1.197 26 H -0.208 1.208 27 C -0.020 4.020 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.211 -29.350 -11.424 31.496 hybrid contribution 1.992 -0.067 1.117 2.285 sum 2.204 -29.416 -10.307 31.248 Atomic orbital electron populations 1.22259 0.95703 1.02448 1.02962 1.21634 0.94603 0.82043 1.03480 1.47969 1.66519 1.14210 1.05391 1.20590 0.77057 0.86619 0.84903 1.90769 1.43936 1.17283 1.87024 1.22851 1.01043 0.99414 0.92709 1.22833 0.97577 0.98699 0.96886 1.22830 1.01521 0.97647 0.95932 1.22822 1.01852 0.97000 0.94043 1.22050 0.95735 0.93208 0.85700 0.87941 1.23193 0.95946 0.97392 1.01828 1.22205 0.87306 0.94526 0.97758 1.48274 1.17464 1.08923 1.60854 1.19986 0.87781 0.79923 0.78513 1.90698 1.23777 1.74354 1.50310 1.23488 1.01449 1.02285 1.02287 1.85403 1.24204 0.96190 1.77658 1.22863 1.03381 0.97639 1.44268 0.90965 1.24991 0.96562 0.96436 0.95645 1.70019 1.25419 1.10336 1.44563 0.86168 0.81238 0.78622 0.79464 1.20299 1.19705 1.20769 1.22062 0.93271 0.87098 0.99546 0.91347 0.91906 0.92317 0.89883 0.90198 0.87097 0.89657 0.90801 0.89934 0.90923 0.90970 0.88540 0.88697 0.90115 0.90169 0.91397 0.89331 0.89376 0.92229 0.91906 0.90208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.84 10.21 37.15 0.38 -0.46 16 2 C 0.11 0.50 5.81 -4.04 -0.02 0.48 16 3 N -0.61 -5.07 2.54 -164.02 -0.42 -5.49 16 4 C 0.52 5.49 6.31 -10.99 -0.07 5.43 16 5 O -0.52 -7.81 12.27 5.56 0.07 -7.74 16 6 C -0.14 -1.03 2.78 -90.96 -0.25 -1.28 16 7 C -0.12 -0.69 6.93 -25.92 -0.18 -0.87 16 8 C -0.14 -0.81 8.08 -25.92 -0.21 -1.02 16 9 C -0.12 -0.99 7.41 -25.92 -0.19 -1.18 16 10 C 0.14 1.33 3.42 -66.09 -0.23 1.10 16 11 H 0.10 0.74 7.90 -51.93 -0.41 0.33 16 12 C -0.14 -1.46 6.42 -24.58 -0.16 -1.62 16 13 C 0.11 1.30 6.69 -2.53 -0.02 1.28 16 14 N -0.62 -10.26 3.33 -170.51 -0.57 -10.82 16 15 C 0.55 11.82 7.87 -10.98 -0.09 11.73 16 16 O -0.52 -13.19 16.19 5.56 0.09 -13.10 16 17 C -0.14 -3.21 5.16 36.01 0.19 -3.02 16 18 S -0.06 -1.75 20.57 -107.50 -2.21 -3.97 16 19 C -0.53 -15.72 9.50 30.94 0.29 -15.42 16 20 H 0.07 2.01 7.80 -52.48 -0.41 1.61 16 21 C 0.07 2.14 5.49 -17.44 -0.10 2.04 16 22 N -0.87 -26.89 13.22 55.49 0.73 -26.16 16 23 Si 0.92 21.96 29.55 -169.99 -5.02 16.94 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.10 1.50 6.12 -3.06 -0.02 1.48 16 28 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.32 7.34 -51.93 -0.38 -0.06 16 31 H 0.08 0.29 5.72 -51.92 -0.30 -0.01 16 32 H 0.08 0.27 7.99 -51.93 -0.41 -0.14 16 33 H 0.11 0.64 7.00 -51.93 -0.36 0.28 16 34 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 35 H 0.07 0.28 7.68 -51.93 -0.40 -0.12 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 1.01 7.43 -51.93 -0.39 0.63 16 40 H 0.09 1.19 6.06 -51.93 -0.31 0.88 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.01 7.48 -51.93 -0.39 0.62 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 1.86 7.85 -51.91 -0.41 1.45 16 45 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 46 H 0.27 7.69 8.31 -40.82 -0.34 7.35 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.08 1.38 6.07 -51.93 -0.32 1.06 16 LS Contribution 393.19 15.07 5.93 5.93 Total: -1.00 -37.90 393.19 -9.92 -47.82 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.85 Total: -2.07 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -0.67 Total: -1.34 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -0.25 Total: -42.47 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.16 Total: -20.83 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.90 -9.92 -47.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738081888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.526 kcal (2) G-P(sol) polarization free energy of solvation -37.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds