Wall clock time and date at job start Sat Apr 11 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47283 * 2 1 4 4 C 1.34774 * 119.99881 * 268.42761 * 3 2 1 5 5 O 1.21280 * 119.99527 * 180.02562 * 4 3 2 6 6 C 1.50694 * 120.00376 * 0.02562 * 4 3 2 7 7 C 1.53780 * 113.61389 * 277.49945 * 6 4 3 8 8 C 1.53787 * 87.07761 * 220.01451 * 7 6 4 9 9 C 1.53780 * 87.08311 * 25.43020 * 8 7 6 10 10 C 1.46497 * 119.99697 * 88.43246 * 3 2 1 11 11 H 1.08997 * 110.64429 * 359.02814 * 10 3 2 12 12 C 1.55149 * 110.72142 * 122.17616 * 10 3 2 13 13 C 1.54917 * 101.58564 * 154.04008 * 12 10 3 14 14 N 1.47422 * 104.82698 * 322.99269 * 13 12 10 15 15 C 1.34780 * 125.64806 * 204.08768 * 14 13 12 16 16 O 1.21283 * 120.00318 * 180.02562 * 15 14 13 17 17 C 1.50702 * 119.99645 * 0.02704 * 15 14 13 18 18 S 1.81002 * 109.46840 * 179.97438 * 17 15 14 19 19 C 1.76204 * 100.00026 * 179.97438 * 18 17 15 20 20 H 1.08004 * 119.99644 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00064 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00414 * 0.02562 * 21 19 18 23 23 Si 1.86807 * 119.99751 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46751 * 269.99968 * 23 21 19 25 25 H 1.48500 * 109.47298 * 29.99743 * 23 21 19 26 26 H 1.48497 * 109.46999 * 150.00327 * 23 21 19 27 27 C 1.47020 * 108.70842 * 24.35338 * 14 13 12 28 28 H 1.09001 * 109.47855 * 184.66629 * 1 2 3 29 29 H 1.09004 * 109.47227 * 304.66333 * 1 2 3 30 30 H 1.09001 * 109.47121 * 64.66197 * 1 2 3 31 31 H 1.09008 * 109.46855 * 240.00085 * 2 1 3 32 32 H 1.09005 * 109.47233 * 119.99991 * 2 1 3 33 33 H 1.09002 * 112.84541 * 48.80074 * 6 4 3 34 34 H 1.08997 * 113.61340 * 334.56207 * 7 6 4 35 35 H 1.09000 * 113.61801 * 105.46859 * 7 6 4 36 36 H 1.08998 * 113.61662 * 270.88456 * 8 7 6 37 37 H 1.09008 * 113.68851 * 139.98870 * 8 7 6 38 38 H 1.08993 * 113.61655 * 220.01774 * 9 8 7 39 39 H 1.09006 * 113.61503 * 89.11345 * 9 8 7 40 40 H 1.09004 * 111.00409 * 35.96577 * 12 10 3 41 41 H 1.09001 * 111.04023 * 272.12387 * 12 10 3 42 42 H 1.08991 * 110.36824 * 204.15359 * 13 12 10 43 43 H 1.08997 * 110.46063 * 81.87064 * 13 12 10 44 44 H 1.09002 * 109.47290 * 59.99941 * 17 15 14 45 45 H 1.08997 * 109.47408 * 299.99647 * 17 15 14 46 46 H 0.96995 * 120.00624 * 180.02562 * 22 21 19 47 47 H 1.09003 * 109.88393 * 118.12647 * 27 14 13 48 48 H 1.08999 * 109.88635 * 239.30028 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2731 2.0059 -1.1668 5 8 2.6779 3.1491 -1.1667 6 6 2.0552 1.2838 -2.4714 7 6 3.2270 0.3733 -2.8747 8 6 3.0067 0.8610 -4.3165 9 6 2.3913 2.1325 -3.7089 10 6 2.2297 2.0833 1.2683 11 1 1.9613 1.4452 2.1102 12 6 3.6996 2.5646 1.3909 13 6 3.5521 3.7746 2.3470 14 7 2.2798 4.4097 1.9581 15 6 1.9500 5.6998 2.1664 16 8 0.8702 6.1160 1.8032 17 6 2.9230 6.6252 2.8505 18 16 2.1946 8.2771 2.9808 19 6 3.5063 9.1265 3.7949 20 1 4.4135 8.5996 4.0517 21 6 3.3738 10.4726 4.1060 22 7 2.2681 11.1147 3.7934 23 14 4.7648 11.3733 4.9683 24 1 4.5842 11.2708 6.4387 25 1 6.0628 10.7621 4.5853 26 1 4.7529 12.8028 4.5666 27 6 1.4276 3.4012 1.3113 28 1 -0.3635 -1.0242 0.0836 29 1 -0.3634 0.5845 0.8453 30 1 -0.3633 0.4398 -0.9288 31 1 1.8932 -0.5139 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.0820 0.7960 -2.5276 34 1 4.1836 0.6796 -2.4516 35 1 3.0226 -0.6884 -2.7369 36 1 2.2944 0.2564 -4.8779 37 1 3.9319 1.0422 -4.8637 38 1 1.5122 2.4910 -4.2444 39 1 3.1195 2.9198 -3.5137 40 1 4.0905 2.8772 0.4226 41 1 4.3288 1.7920 1.8329 42 1 4.3804 4.4695 2.2100 43 1 3.5071 3.4384 3.3828 44 1 3.8433 6.6792 2.2689 45 1 3.1452 6.2460 3.8479 46 1 2.1756 12.0555 4.0105 47 1 0.5137 3.2625 1.8890 48 1 1.1833 3.7175 0.2972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738081888.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:15 Heat of formation + Delta-G solvation = -67.548118 kcal Electronic energy + Delta-G solvation = -27875.029557 eV Core-core repulsion = 24056.057969 eV Total energy + Delta-G solvation = -3818.971588 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -41.95599 -40.74229 -39.04713 -37.73591 -36.73450 -34.61661 -32.99640 -31.11172 -30.79866 -29.43740 -27.76286 -27.33552 -26.56660 -24.56765 -24.19194 -22.84835 -20.88648 -20.72978 -19.80325 -19.55770 -18.30202 -18.16082 -17.45457 -17.03099 -16.90911 -16.60038 -16.36701 -15.90762 -15.71648 -15.63633 -15.10990 -14.70123 -14.55539 -14.43429 -14.01117 -13.85874 -13.79849 -13.63706 -13.41043 -13.40518 -13.19370 -13.03327 -12.90427 -12.78796 -12.64581 -12.55649 -12.45260 -12.24395 -12.00202 -11.84059 -11.72458 -11.42680 -11.28936 -11.16527 -11.04715 -10.45728 -10.32910 -9.73106 -9.71059 -8.72536 -8.36893 -6.16868 1.18641 1.40896 1.41459 1.50825 1.53872 1.59550 1.83718 2.20739 2.24963 2.96898 3.19306 3.40636 3.45922 3.56064 3.63271 3.68992 3.86274 3.90896 3.93789 4.13449 4.15516 4.19133 4.24209 4.28466 4.37433 4.42397 4.58579 4.59706 4.63495 4.70034 4.76257 4.78986 4.85217 4.90480 4.95370 4.97973 5.05835 5.08816 5.15422 5.18496 5.29096 5.38566 5.40995 5.50790 5.67555 6.17271 6.33576 6.40812 7.03344 7.06031 7.21967 8.72802 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019758 B = 0.002326 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.801125 B =12036.284108 C =12445.374814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.101 3.899 3 N -0.601 5.601 4 C 0.512 3.488 5 O -0.573 6.573 6 C -0.135 4.135 7 C -0.110 4.110 8 C -0.131 4.131 9 C -0.136 4.136 10 C 0.148 3.852 11 H 0.143 0.857 12 C -0.133 4.133 13 C 0.094 3.906 14 N -0.610 5.610 15 C 0.543 3.457 16 O -0.572 6.572 17 C -0.115 4.115 18 S -0.154 6.154 19 C -0.545 4.545 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.003 2.997 24 H -0.265 1.265 25 H -0.258 1.258 26 H -0.277 1.277 27 C 0.100 3.900 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.047 0.953 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.133 0.867 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.112 0.888 46 H 0.272 0.728 47 H 0.062 0.938 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.793 -34.927 -9.829 36.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.020 4.020 3 N -0.333 5.333 4 C 0.302 3.698 5 O -0.452 6.452 6 C -0.156 4.156 7 C -0.147 4.147 8 C -0.168 4.168 9 C -0.174 4.174 10 C 0.043 3.957 11 H 0.161 0.839 12 C -0.172 4.172 13 C -0.028 4.028 14 N -0.345 5.345 15 C 0.331 3.669 16 O -0.451 6.451 17 C -0.266 4.266 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.549 5.549 23 Si 0.824 3.176 24 H -0.190 1.190 25 H -0.182 1.182 26 H -0.202 1.202 27 C -0.024 4.024 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.121 0.879 32 H 0.125 0.875 33 H 0.151 0.849 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.142 0.858 42 H 0.093 0.907 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.130 0.870 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.298 -33.528 -10.357 35.167 hybrid contribution 1.299 1.085 0.715 1.838 sum 3.598 -32.443 -9.642 34.036 Atomic orbital electron populations 1.22254 0.95859 1.03453 1.01707 1.21968 0.94377 0.79838 1.05822 1.48085 1.65513 1.15463 1.04234 1.21218 0.76050 0.86080 0.86478 1.90751 1.46637 1.19887 1.87907 1.22946 1.02971 0.99377 0.90331 1.22793 0.95984 0.99943 0.96022 1.22826 1.01703 0.95907 0.96370 1.22841 1.01280 0.97663 0.95663 1.22087 0.94457 0.91454 0.87695 0.83918 1.23143 0.96634 0.97297 1.00093 1.22635 0.84824 0.95131 1.00188 1.48257 1.19420 1.07705 1.59092 1.19866 0.86938 0.81533 0.78568 1.90666 1.25787 1.75833 1.52861 1.23261 1.01187 0.98214 1.03965 1.85620 1.26951 1.01768 1.78298 1.23178 1.03377 0.98313 1.44439 0.89875 1.26199 0.99634 0.97298 0.96167 1.70191 1.27985 1.10859 1.45829 0.84892 0.77441 0.76933 0.78303 1.18962 1.18201 1.20189 1.22234 0.94122 0.88891 0.97152 0.89075 0.93498 0.93422 0.87891 0.87524 0.84921 0.90851 0.87570 0.87844 0.90956 0.91386 0.91853 0.91521 0.85850 0.90650 0.88047 0.88192 0.87013 0.91911 0.91974 0.93841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.18 10.21 71.98 0.73 -0.44 16 2 C 0.10 0.55 5.81 86.38 0.50 1.06 16 3 N -0.60 -8.79 2.54 -791.25 -2.01 -10.80 16 4 C 0.51 10.74 6.31 87.66 0.55 11.30 16 5 O -0.57 -18.51 12.27 -3.03 -0.04 -18.55 16 6 C -0.14 -1.85 2.78 -11.02 -0.03 -1.88 16 7 C -0.11 -0.95 6.93 31.12 0.22 -0.74 16 8 C -0.13 -1.29 8.08 31.12 0.25 -1.04 16 9 C -0.14 -2.35 7.41 31.12 0.23 -2.12 16 10 C 0.15 2.51 3.42 46.18 0.16 2.67 16 11 H 0.14 1.36 7.90 -2.39 -0.02 1.35 16 12 C -0.13 -2.35 6.42 31.99 0.21 -2.14 16 13 C 0.09 2.13 6.69 86.86 0.58 2.71 16 14 N -0.61 -20.41 3.33 -811.76 -2.70 -23.11 16 15 C 0.54 24.24 7.87 87.66 0.69 24.93 16 16 O -0.57 -31.10 16.19 -3.04 -0.05 -31.15 16 17 C -0.12 -5.21 5.16 71.24 0.37 -4.84 16 18 S -0.15 -9.19 20.57 -56.49 -1.16 -10.35 16 19 C -0.55 -32.63 9.50 67.95 0.65 -31.98 16 20 H 0.08 4.61 7.80 -2.91 -0.02 4.59 16 21 C 0.01 0.68 5.49 84.86 0.47 1.15 16 22 N -0.91 -58.04 13.22 21.65 0.29 -57.75 16 23 Si 1.00 44.99 29.55 68.60 2.03 47.02 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 25 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 26 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 27 C 0.10 2.91 6.12 86.73 0.53 3.44 16 28 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 30 H 0.05 0.43 7.34 -2.39 -0.02 0.41 16 31 H 0.10 0.21 5.72 -2.38 -0.01 0.20 16 32 H 0.11 0.11 7.99 -2.38 -0.02 0.09 16 33 H 0.13 1.23 7.00 -2.39 -0.02 1.21 16 34 H 0.07 0.84 8.09 -2.39 -0.02 0.83 16 35 H 0.11 0.28 7.68 -2.39 -0.02 0.26 16 36 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.51 7.43 -2.38 -0.02 1.49 16 40 H 0.07 1.63 6.06 -2.38 -0.01 1.62 16 41 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.79 7.48 -2.39 -0.02 1.77 16 43 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.10 4.25 7.85 -2.39 -0.02 4.23 16 45 H 0.11 4.48 8.14 -2.40 -0.02 4.46 16 46 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 47 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 48 H 0.04 1.60 6.07 -2.39 -0.01 1.59 16 Total: -1.00 -91.07 393.19 3.40 -87.67 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.95 Total: 14.96 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 6.10 Total: 2.06 kcal Atomic # 7 Polarization: -87.24 SS G_CDS: -4.43 Total: -91.67 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.09 Total: -49.70 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: -9.19 SS G_CDS: -1.16 Total: -10.35 kcal Total: -91.07 3.40 -87.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738081888.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.127 kcal (2) G-P(sol) polarization free energy of solvation -91.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds