Wall clock time and date at job start Sat Apr 11 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47451 * 2 1 4 4 C 1.34784 * 119.99785 * 270.00074 * 3 2 1 5 5 O 1.21279 * 119.99681 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.99826 * 359.97438 * 4 3 2 7 7 S 1.81000 * 109.47111 * 179.97438 * 6 4 3 8 8 C 1.76197 * 100.00023 * 179.97438 * 7 6 4 9 9 H 1.08001 * 120.00185 * 0.02562 * 8 7 6 10 10 C 1.38806 * 119.99815 * 179.97438 * 8 7 6 11 11 N 1.31625 * 119.99896 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99828 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46749 * 60.00448 * 12 10 8 14 14 H 1.48491 * 109.46836 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47163 * 300.00402 * 12 10 8 16 16 C 1.46498 * 120.00455 * 89.99653 * 3 2 1 17 17 H 1.09007 * 110.91187 * 3.90559 * 16 3 2 18 18 C 1.55153 * 111.00472 * 127.80399 * 16 3 2 19 19 C 1.54329 * 102.94068 * 153.57666 * 18 16 3 20 20 N 1.47281 * 107.30564 * 337.82035 * 19 18 16 21 21 C 1.34784 * 125.79073 * 178.92204 * 20 19 18 22 22 O 1.21280 * 119.99925 * 174.93324 * 21 20 19 23 23 C 1.50696 * 120.00097 * 354.93694 * 21 20 19 24 24 C 1.53001 * 115.54649 * 280.01140 * 23 21 20 25 25 C 1.52993 * 117.50113 * 134.30369 * 23 21 20 26 26 C 1.52994 * 117.50019 * 65.67568 * 23 21 20 27 27 C 1.47420 * 108.56201 * 358.92444 * 20 19 18 28 28 H 1.08994 * 109.46796 * 60.00092 * 1 2 3 29 29 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46798 * 300.00300 * 1 2 3 31 31 H 1.08997 * 109.46950 * 239.99243 * 2 1 3 32 32 H 1.09007 * 109.47354 * 119.99574 * 2 1 3 33 33 H 1.09003 * 109.47320 * 300.00298 * 6 4 3 34 34 H 1.08998 * 109.47447 * 59.99733 * 6 4 3 35 35 H 0.97001 * 119.99590 * 180.02562 * 11 10 8 36 36 H 1.08996 * 110.72687 * 271.94410 * 18 16 3 37 37 H 1.09008 * 110.72063 * 35.04009 * 18 16 3 38 38 H 1.09003 * 109.87679 * 97.22874 * 19 18 16 39 39 H 1.08999 * 109.87838 * 218.23513 * 19 18 16 40 40 H 1.08996 * 109.47683 * 65.12913 * 24 23 21 41 41 H 1.09000 * 109.46977 * 185.12957 * 24 23 21 42 42 H 1.09000 * 109.47130 * 305.12396 * 24 23 21 43 43 H 1.09002 * 117.49819 * 359.97438 * 25 23 21 44 44 H 1.09000 * 117.50488 * 145.02520 * 25 23 21 45 45 H 1.08998 * 117.49989 * 214.97925 * 26 23 21 46 46 H 1.08999 * 117.50083 * 0.02562 * 26 23 21 47 47 H 1.09000 * 110.36916 * 265.26235 * 27 20 19 48 48 H 1.09001 * 110.37191 * 143.04772 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 -1.1673 5 8 2.6470 3.1601 -1.1673 6 6 1.9924 1.3059 -2.4723 7 16 2.3836 2.4150 -3.8481 8 6 2.0117 1.3584 -5.2082 9 1 1.6572 0.3538 -5.0305 10 6 2.1733 1.8175 -6.5081 11 7 2.6048 3.0420 -6.7247 12 14 1.7783 0.6975 -7.9501 13 1 0.3505 0.2942 -7.8869 14 1 2.0321 1.4203 -9.2222 15 1 2.6375 -0.5120 -7.8873 16 6 2.2626 2.0719 1.2687 17 1 2.0995 1.4028 2.1136 18 6 3.6906 2.6774 1.3064 19 6 3.5390 3.8592 2.2872 20 7 2.1120 4.2223 2.3185 21 6 1.5628 5.1963 3.0712 22 8 0.3874 5.4683 2.9475 23 6 2.4093 5.9473 4.0664 24 6 2.6585 5.2302 5.3947 25 6 2.2758 7.4710 4.0998 26 6 3.5344 6.8260 3.5160 27 6 1.3831 3.3415 1.3880 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.6228 0.4185 -2.5298 34 1 0.9445 1.0113 -2.5302 35 1 2.7174 3.3629 -7.6332 36 1 4.4080 1.9502 1.6866 37 1 3.9868 3.0287 0.3178 38 1 3.8668 3.5592 3.2825 39 1 4.1318 4.7061 1.9415 40 1 3.2492 4.3315 5.2174 41 1 3.1996 5.8933 6.0697 42 1 1.7041 4.9550 5.8437 43 1 1.5760 7.9304 3.4016 44 1 2.3654 7.9631 5.0683 45 1 4.4519 6.8935 4.1005 46 1 3.6621 6.8612 2.4341 47 1 1.2768 3.8220 0.4154 48 1 0.4038 3.0878 1.7940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738083095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:24 Heat of formation + Delta-G solvation = -37.248655 kcal Electronic energy + Delta-G solvation = -27994.553172 eV Core-core repulsion = 24176.895467 eV Total energy + Delta-G solvation = -3817.657705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76892 -39.74245 -37.44225 -36.64061 -35.63411 -32.44807 -31.91224 -30.00820 -29.54597 -29.10292 -27.97142 -25.51938 -24.58535 -23.38397 -22.75809 -22.04519 -21.70579 -19.16553 -18.70377 -17.62935 -17.06649 -16.84076 -16.35278 -15.88007 -15.46259 -15.28542 -14.83346 -14.79561 -13.98254 -13.95907 -13.87111 -13.77169 -13.55390 -13.46517 -13.15395 -12.97781 -12.71299 -12.69581 -12.52980 -12.40192 -12.31571 -11.82218 -11.80830 -11.61223 -11.45196 -11.21243 -11.07830 -11.04050 -10.95702 -10.79751 -10.76800 -10.32325 -9.84053 -9.79978 -9.23365 -9.07604 -8.84029 -8.50307 -8.25639 -6.52287 -6.23377 -3.94157 2.48600 2.57590 2.93884 2.99212 3.22006 3.24196 3.27712 3.40950 3.56393 4.16968 4.18526 4.37146 4.46361 4.55003 4.60124 4.66152 4.73910 4.86373 4.97959 5.08950 5.11130 5.12667 5.17001 5.30966 5.32364 5.33667 5.34585 5.46767 5.49108 5.50851 5.60829 5.64190 5.69944 5.73113 5.77322 5.82757 5.84876 5.89169 5.97233 6.02558 6.09951 6.15532 6.22063 6.69594 7.40776 7.45149 7.57474 8.07108 8.33032 8.47111 9.21929 10.83949 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.002591 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.053165 B =10803.656391 C =11647.729235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.108 3.892 3 N -0.612 5.612 4 C 0.536 3.464 5 O -0.507 6.507 6 C -0.152 4.152 7 S -0.060 6.060 8 C -0.536 4.536 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.142 3.858 17 H 0.099 0.901 18 C -0.154 4.154 19 C 0.111 3.889 20 N -0.608 5.608 21 C 0.565 3.435 22 O -0.537 6.537 23 C -0.156 4.156 24 C -0.105 4.105 25 C -0.146 4.146 26 C -0.163 4.163 27 C 0.094 3.906 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.100 0.900 47 H 0.090 0.910 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -2.484 24.172 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.016 4.016 3 N -0.348 5.348 4 C 0.324 3.676 5 O -0.381 6.381 6 C -0.302 4.302 7 S 0.167 5.833 8 C -0.684 4.684 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.503 5.503 12 Si 0.744 3.256 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.199 1.199 16 C 0.037 3.963 17 H 0.117 0.883 18 C -0.192 4.192 19 C -0.012 4.012 20 N -0.342 5.342 21 C 0.353 3.647 22 O -0.414 6.414 23 C -0.159 4.159 24 C -0.162 4.162 25 C -0.183 4.183 26 C -0.200 4.200 27 C -0.029 4.029 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.119 0.881 44 H 0.122 0.878 45 H 0.122 0.878 46 H 0.118 0.882 47 H 0.108 0.892 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.430 -0.453 24.002 24.129 hybrid contribution -0.758 -2.190 -0.972 2.513 sum 1.672 -2.643 23.030 23.241 Atomic orbital electron populations 1.22250 0.95853 1.02309 1.02876 1.21593 0.94568 0.82013 1.03382 1.47909 1.67696 1.14331 1.04833 1.20355 0.76318 0.86488 0.84429 1.90651 1.43442 1.17287 1.86711 1.23605 1.04833 1.04558 0.97208 1.85383 1.86844 1.17812 0.93309 1.22806 1.51973 1.01397 0.92202 0.91015 1.24986 0.94642 0.95529 0.98367 1.70003 1.42868 1.15603 1.21784 0.86236 0.78972 0.80040 0.80338 1.19936 1.20811 1.19931 1.22019 0.94888 0.93072 0.86354 0.88282 1.23186 0.96732 0.96765 1.02552 1.22032 0.81822 0.98054 0.99296 1.48300 1.09309 1.34452 1.42106 1.19179 0.86992 0.78617 0.79919 1.90710 1.16771 1.65531 1.68385 1.21354 1.03106 0.93780 0.97700 1.21214 1.02162 1.00059 0.92765 1.23036 1.00030 0.91916 1.03312 1.23155 0.93041 1.02112 1.01722 1.22610 0.95299 0.90067 0.94925 0.91793 0.91482 0.92476 0.89644 0.90541 0.89280 0.89202 0.92117 0.90185 0.87153 0.91520 0.90925 0.91777 0.91366 0.91729 0.88076 0.87844 0.87762 0.88157 0.89199 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.11 1.04 5.93 -4.04 -0.02 1.02 16 3 N -0.61 -7.84 2.56 -163.67 -0.42 -8.25 16 4 C 0.54 9.38 6.97 -10.98 -0.08 9.30 16 5 O -0.51 -10.47 11.90 5.56 0.07 -10.41 16 6 C -0.15 -2.94 4.71 36.00 0.17 -2.77 16 7 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 8 C -0.54 -14.99 9.50 30.94 0.29 -14.70 16 9 H 0.07 1.89 7.80 -52.49 -0.41 1.49 16 10 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 11 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 12 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.14 1.61 3.55 -65.79 -0.23 1.37 16 17 H 0.10 0.86 7.86 -51.93 -0.41 0.46 16 18 C -0.15 -1.69 6.27 -24.90 -0.16 -1.85 16 19 C 0.11 1.12 6.18 -2.92 -0.02 1.10 16 20 N -0.61 -7.81 3.33 -170.31 -0.57 -8.38 16 21 C 0.57 7.89 7.01 -10.98 -0.08 7.81 16 22 O -0.54 -9.69 17.29 5.56 0.10 -9.59 16 23 C -0.16 -1.57 1.83 -155.67 -0.29 -1.85 16 24 C -0.10 -0.77 9.71 37.16 0.36 -0.41 16 25 C -0.15 -1.34 9.84 -26.73 -0.26 -1.60 16 26 C -0.16 -1.37 8.95 -26.73 -0.24 -1.61 16 27 C 0.09 1.32 6.28 -2.53 -0.02 1.30 16 28 H 0.06 0.74 7.22 -51.93 -0.38 0.36 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.85 6.44 -51.93 -0.33 0.51 16 32 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 33 H 0.09 1.59 7.40 -51.92 -0.38 1.21 16 34 H 0.09 1.65 7.19 -51.92 -0.37 1.27 16 35 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.11 1.62 5.58 -51.92 -0.29 1.33 16 38 H 0.07 0.51 7.29 -51.93 -0.38 0.13 16 39 H 0.07 0.73 7.19 -51.93 -0.37 0.36 16 40 H 0.06 0.41 7.29 -51.93 -0.38 0.04 16 41 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.10 0.96 7.77 -51.93 -0.40 0.56 16 47 H 0.09 1.59 6.20 -51.93 -0.32 1.27 16 48 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 LS Contribution 396.89 15.07 5.98 5.98 Total: -1.00 -35.21 396.89 -9.40 -44.61 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -7.78 Total: 1.06 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -0.28 Total: -2.17 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: -0.25 Total: -41.85 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: 0.16 Total: -20.00 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.21 -9.40 -44.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738083095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.359 kcal (2) G-P(sol) polarization free energy of solvation -35.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds