Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47451 * 2 1 4 4 C 1.34784 * 119.99785 * 270.00074 * 3 2 1 5 5 O 1.21279 * 119.99681 * 179.97438 * 4 3 2 6 6 C 1.50696 * 119.99826 * 359.97438 * 4 3 2 7 7 S 1.81000 * 109.47111 * 179.97438 * 6 4 3 8 8 C 1.76197 * 100.00023 * 179.97438 * 7 6 4 9 9 H 1.08001 * 120.00185 * 0.02562 * 8 7 6 10 10 C 1.38806 * 119.99815 * 179.97438 * 8 7 6 11 11 N 1.31625 * 119.99896 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99828 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46749 * 60.00448 * 12 10 8 14 14 H 1.48491 * 109.46836 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47163 * 300.00402 * 12 10 8 16 16 C 1.46498 * 120.00455 * 89.99653 * 3 2 1 17 17 H 1.09007 * 110.91187 * 3.90559 * 16 3 2 18 18 C 1.55153 * 111.00472 * 127.80399 * 16 3 2 19 19 C 1.54329 * 102.94068 * 153.57666 * 18 16 3 20 20 N 1.47281 * 107.30564 * 337.82035 * 19 18 16 21 21 C 1.34784 * 125.79073 * 178.92204 * 20 19 18 22 22 O 1.21280 * 119.99925 * 174.93324 * 21 20 19 23 23 C 1.50696 * 120.00097 * 354.93694 * 21 20 19 24 24 C 1.53001 * 115.54649 * 280.01140 * 23 21 20 25 25 C 1.52993 * 117.50113 * 134.30369 * 23 21 20 26 26 C 1.52994 * 117.50019 * 65.67568 * 23 21 20 27 27 C 1.47420 * 108.56201 * 358.92444 * 20 19 18 28 28 H 1.08994 * 109.46796 * 60.00092 * 1 2 3 29 29 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46798 * 300.00300 * 1 2 3 31 31 H 1.08997 * 109.46950 * 239.99243 * 2 1 3 32 32 H 1.09007 * 109.47354 * 119.99574 * 2 1 3 33 33 H 1.09003 * 109.47320 * 300.00298 * 6 4 3 34 34 H 1.08998 * 109.47447 * 59.99733 * 6 4 3 35 35 H 0.97001 * 119.99590 * 180.02562 * 11 10 8 36 36 H 1.08996 * 110.72687 * 271.94410 * 18 16 3 37 37 H 1.09008 * 110.72063 * 35.04009 * 18 16 3 38 38 H 1.09003 * 109.87679 * 97.22874 * 19 18 16 39 39 H 1.08999 * 109.87838 * 218.23513 * 19 18 16 40 40 H 1.08996 * 109.47683 * 65.12913 * 24 23 21 41 41 H 1.09000 * 109.46977 * 185.12957 * 24 23 21 42 42 H 1.09000 * 109.47130 * 305.12396 * 24 23 21 43 43 H 1.09002 * 117.49819 * 359.97438 * 25 23 21 44 44 H 1.09000 * 117.50488 * 145.02520 * 25 23 21 45 45 H 1.08998 * 117.49989 * 214.97925 * 26 23 21 46 46 H 1.08999 * 117.50083 * 0.02562 * 26 23 21 47 47 H 1.09000 * 110.36916 * 265.26235 * 27 20 19 48 48 H 1.09001 * 110.37191 * 143.04772 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2431 2.0165 -1.1673 5 8 2.6470 3.1601 -1.1673 6 6 1.9924 1.3059 -2.4723 7 16 2.3836 2.4150 -3.8481 8 6 2.0117 1.3584 -5.2082 9 1 1.6572 0.3538 -5.0305 10 6 2.1733 1.8175 -6.5081 11 7 2.6048 3.0420 -6.7247 12 14 1.7783 0.6975 -7.9501 13 1 0.3505 0.2942 -7.8869 14 1 2.0321 1.4203 -9.2222 15 1 2.6375 -0.5120 -7.8873 16 6 2.2626 2.0719 1.2687 17 1 2.0995 1.4028 2.1136 18 6 3.6906 2.6774 1.3064 19 6 3.5390 3.8592 2.2872 20 7 2.1120 4.2223 2.3185 21 6 1.5628 5.1963 3.0712 22 8 0.3874 5.4683 2.9475 23 6 2.4093 5.9473 4.0664 24 6 2.6585 5.2302 5.3947 25 6 2.2758 7.4710 4.0998 26 6 3.5344 6.8260 3.5160 27 6 1.3831 3.3415 1.3880 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 2.6228 0.4185 -2.5298 34 1 0.9445 1.0113 -2.5302 35 1 2.7174 3.3629 -7.6332 36 1 4.4080 1.9502 1.6866 37 1 3.9868 3.0287 0.3178 38 1 3.8668 3.5592 3.2825 39 1 4.1318 4.7061 1.9415 40 1 3.2492 4.3315 5.2174 41 1 3.1996 5.8933 6.0697 42 1 1.7041 4.9550 5.8437 43 1 1.5760 7.9304 3.4016 44 1 2.3654 7.9631 5.0683 45 1 4.4519 6.8935 4.1005 46 1 3.6621 6.8612 2.4341 47 1 1.2768 3.8220 0.4154 48 1 0.4038 3.0878 1.7940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738083095.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -59.934820 kcal Electronic energy + Delta-G solvation = -27995.536918 eV Core-core repulsion = 24176.895467 eV Total energy + Delta-G solvation = -3818.641451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.84554 -40.86962 -38.46040 -37.65842 -36.76117 -34.59388 -32.92981 -31.13719 -30.68153 -29.79132 -29.07097 -27.66553 -25.58566 -24.33489 -23.48026 -22.91841 -22.70007 -20.49481 -19.87286 -19.26314 -18.13409 -17.93012 -17.52385 -16.91677 -16.88439 -16.61129 -16.44931 -15.92307 -15.59250 -14.91234 -14.84518 -14.73772 -14.68862 -14.44738 -14.30366 -14.07972 -14.04004 -13.65122 -13.48171 -13.33685 -13.20681 -13.18378 -12.89805 -12.77752 -12.64093 -12.55650 -12.51185 -12.37847 -12.17424 -11.82609 -11.74161 -11.55193 -11.13540 -11.05536 -10.80365 -10.58014 -10.26918 -9.92802 -9.60510 -8.67155 -8.35422 -6.13195 1.23114 1.41723 1.42622 1.44348 1.51606 1.56240 1.74767 2.18046 2.27347 2.67363 2.98731 3.23967 3.29091 3.54164 3.63047 3.69369 3.73137 3.86660 3.96466 4.04127 4.09858 4.20201 4.21153 4.25480 4.39663 4.48431 4.50529 4.59015 4.66697 4.69575 4.74115 4.75021 4.83783 4.90127 4.91402 4.93714 4.97955 4.99671 5.12191 5.15610 5.20871 5.27542 5.35660 5.40446 5.68606 6.18439 6.27727 6.40562 7.00324 7.05860 7.15049 8.73462 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017605 B = 0.002591 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.053165 B =10803.656391 C =11647.729235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.598 5.598 4 C 0.534 3.466 5 O -0.547 6.547 6 C -0.125 4.125 7 S -0.151 6.151 8 C -0.545 4.545 9 H 0.082 0.918 10 C 0.013 3.987 11 N -0.912 5.912 12 Si 0.997 3.003 13 H -0.263 1.263 14 H -0.280 1.280 15 H -0.259 1.259 16 C 0.148 3.852 17 H 0.145 0.855 18 C -0.150 4.150 19 C 0.111 3.889 20 N -0.607 5.607 21 C 0.554 3.446 22 O -0.593 6.593 23 C -0.163 4.163 24 C -0.099 4.099 25 C -0.154 4.154 26 C -0.146 4.146 27 C 0.093 3.907 28 H 0.034 0.966 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.271 0.729 36 H 0.116 0.884 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.131 0.869 45 H 0.138 0.862 46 H 0.080 0.920 47 H 0.042 0.958 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.665 -5.448 26.827 27.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.331 5.331 4 C 0.322 3.678 5 O -0.424 6.424 6 C -0.276 4.276 7 S 0.076 5.924 8 C -0.693 4.693 9 H 0.100 0.900 10 C -0.191 4.191 11 N -0.548 5.548 12 Si 0.818 3.182 13 H -0.188 1.188 14 H -0.205 1.205 15 H -0.184 1.184 16 C 0.044 3.956 17 H 0.162 0.838 18 C -0.188 4.188 19 C -0.011 4.011 20 N -0.340 5.340 21 C 0.344 3.656 22 O -0.474 6.474 23 C -0.166 4.166 24 C -0.156 4.156 25 C -0.191 4.191 26 C -0.183 4.183 27 C -0.031 4.031 28 H 0.053 0.947 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.149 0.851 45 H 0.156 0.844 46 H 0.099 0.901 47 H 0.060 0.940 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.668 -3.466 26.693 27.165 hybrid contribution -1.186 -1.263 -1.715 2.438 sum 2.481 -4.729 24.978 25.542 Atomic orbital electron populations 1.22227 0.95736 1.03483 1.01563 1.21945 0.94610 0.80039 1.05536 1.47875 1.66024 1.15384 1.03832 1.20066 0.76573 0.85964 0.85244 1.90656 1.45508 1.18946 1.87315 1.23420 1.05627 1.03227 0.95283 1.85553 1.87548 1.22025 0.97269 1.23150 1.51777 1.01673 0.92677 0.89989 1.26122 0.94186 0.97138 1.01692 1.70178 1.44291 1.17866 1.22485 0.85028 0.79265 0.77935 0.75939 1.18816 1.20477 1.18391 1.22250 0.94368 0.92485 0.86507 0.83785 1.23130 0.97039 0.97769 1.00866 1.22234 0.79900 0.97733 1.01212 1.48453 1.10516 1.33920 1.41078 1.20043 0.86864 0.78421 0.80268 1.90671 1.19349 1.67114 1.70217 1.21425 1.03279 0.93799 0.98055 1.21255 1.02263 1.00918 0.91156 1.23130 1.00106 0.91704 1.04193 1.23216 0.93770 1.00269 1.01076 1.22465 0.96276 0.91472 0.92911 0.94679 0.89038 0.92256 0.89637 0.86265 0.87305 0.88200 0.92039 0.86539 0.91229 0.87438 0.91300 0.90270 0.88823 0.92716 0.90856 0.85068 0.84363 0.90096 0.94002 0.91398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.89 10.24 71.98 0.74 -2.15 16 2 C 0.10 1.62 5.93 86.38 0.51 2.13 16 3 N -0.60 -14.46 2.56 -790.13 -2.02 -16.48 16 4 C 0.53 19.09 6.97 87.65 0.61 19.71 16 5 O -0.55 -24.01 11.90 -3.03 -0.04 -24.05 16 6 C -0.12 -4.90 4.71 71.23 0.34 -4.56 16 7 S -0.15 -8.37 20.57 -56.49 -1.16 -9.54 16 8 C -0.54 -31.07 9.50 67.96 0.65 -30.42 16 9 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 10 C 0.01 0.76 5.49 84.86 0.47 1.23 16 11 N -0.91 -56.30 13.22 21.65 0.29 -56.01 16 12 Si 1.00 43.60 29.55 68.60 2.03 45.62 16 13 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 14 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 15 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 16 C 0.15 3.05 3.55 46.38 0.16 3.22 16 17 H 0.14 1.80 7.86 -2.38 -0.02 1.78 16 18 C -0.15 -3.00 6.27 31.78 0.20 -2.80 16 19 C 0.11 2.02 6.18 86.68 0.54 2.55 16 20 N -0.61 -15.59 3.33 -811.13 -2.71 -18.29 16 21 C 0.55 15.81 7.01 87.65 0.61 16.42 16 22 O -0.59 -22.74 17.29 -3.03 -0.05 -22.80 16 23 C -0.16 -3.05 1.83 -52.93 -0.10 -3.15 16 24 C -0.10 -1.14 9.71 71.98 0.70 -0.44 16 25 C -0.15 -2.74 9.84 30.59 0.30 -2.44 16 26 C -0.15 -2.22 8.95 30.59 0.27 -1.95 16 27 C 0.09 2.68 6.28 86.86 0.55 3.22 16 28 H 0.03 0.79 7.22 -2.39 -0.02 0.77 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.43 6.44 -2.39 -0.02 1.42 16 32 H 0.12 1.03 7.93 -2.38 -0.02 1.01 16 33 H 0.11 3.82 7.40 -2.39 -0.02 3.80 16 34 H 0.10 3.70 7.19 -2.40 -0.02 3.69 16 35 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 36 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 2.06 5.58 -2.38 -0.01 2.05 16 38 H 0.11 1.14 7.29 -2.39 -0.02 1.12 16 39 H 0.07 1.33 7.19 -2.39 -0.02 1.31 16 40 H 0.08 0.67 7.29 -2.39 -0.02 0.66 16 41 H 0.09 0.64 8.09 -2.39 -0.02 0.62 16 42 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.08 1.56 7.77 -2.39 -0.02 1.54 16 47 H 0.04 1.62 6.20 -2.39 -0.01 1.60 16 48 H 0.07 1.98 8.09 -2.39 -0.02 1.96 16 Total: -1.00 -85.22 396.89 3.83 -81.39 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.95 Total: 19.59 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 6.54 Total: 0.56 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -4.44 Total: -90.79 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -0.09 Total: -46.84 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.16 Total: -9.54 kcal Total: -85.22 3.83 -81.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738083095.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.460 kcal (2) G-P(sol) polarization free energy of solvation -85.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds