Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47497 * 2 1 4 4 C 1.53003 * 109.46790 * 239.99650 * 2 1 3 5 5 N 1.46499 * 109.46708 * 185.00148 * 4 2 1 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 S 1.81008 * 109.46759 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99946 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99996 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00252 * 179.97438 * 10 9 8 13 13 N 1.31635 * 119.99702 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00159 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47227 * 90.00206 * 14 12 10 16 16 H 1.48500 * 109.46795 * 210.00220 * 14 12 10 17 17 H 1.48500 * 109.46955 * 329.99779 * 14 12 10 18 18 N 1.46501 * 109.46646 * 120.00381 * 2 1 3 19 19 C 1.34781 * 119.99698 * 274.99553 * 18 2 1 20 20 O 1.21279 * 119.99889 * 359.97438 * 19 18 2 21 21 C 1.50703 * 119.99724 * 180.02562 * 19 18 2 22 22 C 1.53000 * 109.47064 * 60.00333 * 21 19 18 23 23 C 1.53001 * 117.49344 * 248.74518 * 22 21 19 24 24 C 1.53004 * 117.49867 * 180.08822 * 22 21 19 25 25 C 1.53004 * 109.46964 * 179.97438 * 21 19 18 26 26 C 1.52999 * 117.49815 * 128.74382 * 25 21 19 27 27 C 1.53000 * 117.49566 * 60.08843 * 25 21 19 28 28 H 1.09005 * 109.47117 * 300.00595 * 1 2 3 29 29 H 1.09007 * 109.46691 * 59.99617 * 1 2 3 30 30 H 1.08995 * 109.47897 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46692 * 65.00650 * 4 2 1 32 32 H 1.08994 * 109.47584 * 305.00514 * 4 2 1 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.46809 * 299.99238 * 8 6 5 35 35 H 1.08993 * 109.47525 * 59.99679 * 8 6 5 36 36 H 0.97000 * 119.99806 * 179.97438 * 13 12 10 37 37 H 0.97002 * 120.00468 * 95.00180 * 18 2 1 38 38 H 1.08994 * 109.47322 * 300.00223 * 21 19 18 39 39 H 1.09000 * 115.55222 * 34.41150 * 22 21 19 40 40 H 1.08996 * 117.50595 * 359.97438 * 23 22 21 41 41 H 1.09000 * 117.49835 * 145.02296 * 23 22 21 42 42 H 1.09004 * 117.49582 * 214.97801 * 24 22 21 43 43 H 1.08998 * 117.49651 * 359.96799 * 24 22 21 44 44 H 1.09001 * 115.55112 * 274.42215 * 25 21 19 45 45 H 1.09003 * 117.49659 * 0.02562 * 26 25 21 46 46 H 1.09002 * 117.49416 * 145.01962 * 26 25 21 47 47 H 1.09003 * 117.49612 * 214.97561 * 27 25 21 48 48 H 1.09000 * 117.50333 * 359.97194 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.4999 -0.8265 -1.1905 6 6 4.1730 -1.4285 -2.1912 7 8 3.5699 -1.8827 -3.1403 8 6 5.6754 -1.5312 -2.1336 9 16 6.2787 -2.3847 -3.6115 10 6 8.0111 -2.3645 -3.2906 11 1 8.3877 -1.9083 -2.3871 12 6 8.8919 -2.9349 -4.1991 13 7 8.4329 -3.4914 -5.3002 14 14 10.7285 -2.9142 -3.8586 15 1 11.1058 -4.1361 -3.1038 16 1 11.4699 -2.8781 -5.1447 17 1 11.0696 -1.7118 -3.0567 18 7 2.0182 -0.6907 1.1962 19 6 2.1469 -0.0183 2.3572 20 8 1.8590 1.1585 2.4115 21 6 2.6497 -0.7287 3.5875 22 6 4.0524 -1.2787 3.3214 23 6 4.2109 -2.7981 3.2360 24 6 4.7396 -2.0405 4.4565 25 6 2.7017 0.2545 4.7586 26 6 2.0220 -0.1646 6.0637 27 6 1.3896 0.9166 5.1839 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 1.7516 -0.1584 -2.1369 32 1 1.6053 -1.7198 -1.2952 33 1 3.9823 -0.4629 -0.4315 34 1 6.1065 -0.5310 -2.0907 35 1 5.9676 -2.0913 -1.2455 36 1 9.0484 -3.8897 -5.9353 37 1 2.2489 -1.6319 1.1526 38 1 1.9775 -1.5510 3.8325 39 1 4.6807 -0.6698 2.6713 40 1 3.3161 -3.4058 3.3697 41 1 4.9438 -3.1887 2.5300 42 1 5.8201 -1.9330 4.5529 43 1 4.1926 -2.1494 5.3930 44 1 3.6126 0.8485 4.8337 45 1 1.5381 -1.1411 6.0880 46 1 2.4856 0.1538 6.9974 47 1 1.4373 1.9460 5.5393 48 1 0.4894 0.6521 4.6291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738580936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = -36.476002 kcal Electronic energy + Delta-G solvation = -27210.957442 eV Core-core repulsion = 23393.333242 eV Total energy + Delta-G solvation = -3817.624200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66830 -39.27415 -38.11176 -36.72401 -36.13117 -33.65480 -32.44898 -31.69364 -29.58281 -29.14166 -26.02914 -25.39723 -23.16616 -22.57533 -22.37260 -21.74006 -20.98916 -20.36993 -20.08656 -18.03701 -17.55664 -16.82321 -16.28472 -16.17005 -15.94508 -15.28002 -15.23080 -14.94200 -14.82344 -14.42407 -14.13381 -13.92621 -13.76830 -13.48290 -13.08874 -12.92827 -12.84581 -12.57288 -12.29284 -12.06127 -11.88158 -11.84634 -11.81085 -11.73928 -11.28338 -11.08205 -11.04655 -10.92598 -10.78079 -10.72303 -10.61502 -10.16477 -9.84243 -9.78404 -9.50104 -9.35654 -9.09418 -8.96666 -8.26486 -6.52573 -6.23856 -3.94572 2.37422 2.76419 2.99972 3.05410 3.20636 3.26354 3.30320 3.36590 3.60039 3.68916 4.18180 4.18303 4.30786 4.37518 4.46581 4.63522 4.68091 4.74667 4.82964 4.89111 4.95730 5.00791 5.04140 5.11389 5.11984 5.33128 5.34641 5.36979 5.38483 5.42157 5.51416 5.61771 5.64624 5.68195 5.74813 5.78025 5.82895 5.83524 5.85110 5.90212 5.96160 6.10271 6.20576 6.52748 7.22529 7.57348 7.63281 7.98192 8.33007 8.55229 9.21575 10.83538 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.002542 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.708893 B =11013.900454 C =12711.750820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.059 6.059 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.726 5.726 19 C 0.522 3.478 20 O -0.529 6.529 21 C -0.045 4.045 22 C -0.151 4.151 23 C -0.178 4.178 24 C -0.167 4.167 25 C -0.128 4.128 26 C -0.184 4.184 27 C -0.157 4.157 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.398 0.602 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.403 0.597 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.578 5.331 22.291 27.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.113 0.887 4 C -0.011 4.011 5 N -0.394 5.394 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.379 5.379 19 C 0.308 3.692 20 O -0.405 6.405 21 C -0.066 4.066 22 C -0.170 4.170 23 C -0.215 4.215 24 C -0.204 4.204 25 C -0.146 4.146 26 C -0.221 4.221 27 C -0.194 4.194 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.238 0.762 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.770 5.337 20.547 26.445 hybrid contribution 2.244 0.227 1.595 2.763 sum -13.526 5.564 22.142 26.536 Atomic orbital electron populations 1.22098 0.94150 1.02599 1.03022 1.21231 0.94867 0.97853 0.83422 0.88704 1.21607 0.81165 1.01275 0.97089 1.45985 1.06776 1.62008 1.24612 1.20318 0.89518 0.76739 0.81607 1.90711 1.69873 1.46015 1.32436 1.23524 0.93511 1.05690 1.07648 1.85400 1.04556 1.72949 1.20366 1.22856 0.91471 1.44243 1.09790 0.90962 1.24994 0.99597 0.94550 0.94447 1.70018 1.35426 1.35369 1.09452 0.86170 0.82848 0.78609 0.77896 1.20268 1.20736 1.19693 1.46156 1.67744 1.14448 1.09530 1.20512 0.77157 0.87262 0.84260 1.90712 1.49290 1.15715 1.84736 1.20504 0.96096 0.97657 0.92333 1.22093 0.96059 0.94762 1.04053 1.23143 1.03761 0.93017 1.01547 1.22926 1.00676 1.03410 0.93339 1.21828 0.98007 1.01155 0.93621 1.23102 1.04523 0.99916 0.94549 1.22792 0.96546 0.97652 1.02385 0.91670 0.91119 0.92077 0.90032 0.90967 0.76757 0.89278 0.89311 0.92169 0.76180 0.88677 0.87252 0.88645 0.88033 0.88519 0.88493 0.87375 0.89053 0.88741 0.88834 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.13 1.13 2.73 -67.93 -0.19 0.94 16 3 H 0.09 0.95 7.58 -51.93 -0.39 0.56 16 4 C 0.11 1.18 5.23 -4.04 -0.02 1.16 16 5 N -0.74 -9.16 5.39 -60.30 -0.32 -9.49 16 6 C 0.53 9.47 7.85 -10.98 -0.09 9.39 16 7 O -0.52 -11.29 15.86 5.56 0.09 -11.20 16 8 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.54 -15.06 9.50 30.94 0.29 -14.76 16 11 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -25.94 13.22 55.49 0.73 -25.20 16 14 Si 0.92 21.21 29.55 -169.99 -5.02 16.19 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 18 N -0.73 -5.70 4.42 -53.81 -0.24 -5.94 16 19 C 0.52 4.84 6.97 -10.98 -0.08 4.76 16 20 O -0.53 -6.67 14.75 5.56 0.08 -6.59 16 21 C -0.04 -0.33 2.50 -91.77 -0.23 -0.55 16 22 C -0.15 -1.05 4.93 -90.62 -0.45 -1.50 16 23 C -0.18 -1.17 10.18 -26.69 -0.27 -1.44 16 24 C -0.17 -1.08 9.88 -26.69 -0.26 -1.34 16 25 C -0.13 -1.00 4.38 -90.62 -0.40 -1.39 16 26 C -0.18 -1.18 10.18 -26.70 -0.27 -1.46 16 27 C -0.16 -1.27 8.98 -26.70 -0.24 -1.51 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.40 4.17 8.14 -40.82 -0.33 3.84 16 34 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 35 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 36 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.40 2.74 8.50 -40.82 -0.35 2.40 16 38 H 0.10 0.59 7.66 -51.93 -0.40 0.20 16 39 H 0.11 0.86 8.11 -51.93 -0.42 0.44 16 40 H 0.10 0.54 8.05 -51.93 -0.42 0.12 16 41 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.11 0.92 8.11 -51.93 -0.42 0.50 16 45 H 0.09 0.52 8.05 -51.93 -0.42 0.10 16 46 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 415.67 15.07 6.26 6.26 Total: -1.00 -34.48 415.67 -10.54 -45.02 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -8.19 Total: 4.12 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.72 Total: -9.37 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.17 Total: -40.63 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.17 Total: -17.79 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -34.48 -10.54 -45.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738580936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.540 kcal (2) G-P(sol) polarization free energy of solvation -34.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds