Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47497 * 2 1 4 4 C 1.53003 * 109.46790 * 239.99650 * 2 1 3 5 5 N 1.46499 * 109.46708 * 185.00148 * 4 2 1 6 6 C 1.34784 * 119.99893 * 180.02562 * 5 4 2 7 7 O 1.21283 * 119.99649 * 0.02562 * 6 5 4 8 8 C 1.50697 * 119.99774 * 179.72962 * 6 5 4 9 9 S 1.81008 * 109.46759 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99946 * 179.97438 * 9 8 6 11 11 H 1.08000 * 119.99996 * 359.97438 * 10 9 8 12 12 C 1.38798 * 120.00252 * 179.97438 * 10 9 8 13 13 N 1.31635 * 119.99702 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00159 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47227 * 90.00206 * 14 12 10 16 16 H 1.48500 * 109.46795 * 210.00220 * 14 12 10 17 17 H 1.48500 * 109.46955 * 329.99779 * 14 12 10 18 18 N 1.46501 * 109.46646 * 120.00381 * 2 1 3 19 19 C 1.34781 * 119.99698 * 274.99553 * 18 2 1 20 20 O 1.21279 * 119.99889 * 359.97438 * 19 18 2 21 21 C 1.50703 * 119.99724 * 180.02562 * 19 18 2 22 22 C 1.53000 * 109.47064 * 60.00333 * 21 19 18 23 23 C 1.53001 * 117.49344 * 248.74518 * 22 21 19 24 24 C 1.53004 * 117.49867 * 180.08822 * 22 21 19 25 25 C 1.53004 * 109.46964 * 179.97438 * 21 19 18 26 26 C 1.52999 * 117.49815 * 128.74382 * 25 21 19 27 27 C 1.53000 * 117.49566 * 60.08843 * 25 21 19 28 28 H 1.09005 * 109.47117 * 300.00595 * 1 2 3 29 29 H 1.09007 * 109.46691 * 59.99617 * 1 2 3 30 30 H 1.08995 * 109.47897 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46692 * 65.00650 * 4 2 1 32 32 H 1.08994 * 109.47584 * 305.00514 * 4 2 1 33 33 H 0.97005 * 120.00261 * 0.02562 * 5 4 2 34 34 H 1.09001 * 109.46809 * 299.99238 * 8 6 5 35 35 H 1.08993 * 109.47525 * 59.99679 * 8 6 5 36 36 H 0.97000 * 119.99806 * 179.97438 * 13 12 10 37 37 H 0.97002 * 120.00468 * 95.00180 * 18 2 1 38 38 H 1.08994 * 109.47322 * 300.00223 * 21 19 18 39 39 H 1.09000 * 115.55222 * 34.41150 * 22 21 19 40 40 H 1.08996 * 117.50595 * 359.97438 * 23 22 21 41 41 H 1.09000 * 117.49835 * 145.02296 * 23 22 21 42 42 H 1.09004 * 117.49582 * 214.97801 * 24 22 21 43 43 H 1.08998 * 117.49651 * 359.96799 * 24 22 21 44 44 H 1.09001 * 115.55112 * 274.42215 * 25 21 19 45 45 H 1.09003 * 117.49659 * 0.02562 * 26 25 21 46 46 H 1.09002 * 117.49416 * 145.01962 * 26 25 21 47 47 H 1.09003 * 117.49612 * 214.97561 * 27 25 21 48 48 H 1.09000 * 117.50333 * 359.97194 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0399 -0.7214 -1.2492 5 7 3.4999 -0.8265 -1.1905 6 6 4.1730 -1.4285 -2.1912 7 8 3.5699 -1.8827 -3.1403 8 6 5.6754 -1.5312 -2.1336 9 16 6.2787 -2.3847 -3.6115 10 6 8.0111 -2.3645 -3.2906 11 1 8.3877 -1.9083 -2.3871 12 6 8.8919 -2.9349 -4.1991 13 7 8.4329 -3.4914 -5.3002 14 14 10.7285 -2.9142 -3.8586 15 1 11.1058 -4.1361 -3.1038 16 1 11.4699 -2.8781 -5.1447 17 1 11.0696 -1.7118 -3.0567 18 7 2.0182 -0.6907 1.1962 19 6 2.1469 -0.0183 2.3572 20 8 1.8590 1.1585 2.4115 21 6 2.6497 -0.7287 3.5875 22 6 4.0524 -1.2787 3.3214 23 6 4.2109 -2.7981 3.2360 24 6 4.7396 -2.0405 4.4565 25 6 2.7017 0.2545 4.7586 26 6 2.0220 -0.1646 6.0637 27 6 1.3896 0.9166 5.1839 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3635 -1.0276 -0.0005 31 1 1.7516 -0.1584 -2.1369 32 1 1.6053 -1.7198 -1.2952 33 1 3.9823 -0.4629 -0.4315 34 1 6.1065 -0.5310 -2.0907 35 1 5.9676 -2.0913 -1.2455 36 1 9.0484 -3.8897 -5.9353 37 1 2.2489 -1.6319 1.1526 38 1 1.9775 -1.5510 3.8325 39 1 4.6807 -0.6698 2.6713 40 1 3.3161 -3.4058 3.3697 41 1 4.9438 -3.1887 2.5300 42 1 5.8201 -1.9330 4.5529 43 1 4.1926 -2.1494 5.3930 44 1 3.6126 0.8485 4.8337 45 1 1.5381 -1.1411 6.0880 46 1 2.4856 0.1538 6.9974 47 1 1.4373 1.9460 5.5393 48 1 0.4894 0.6521 4.6291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738580936.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = -58.612256 kcal Electronic energy + Delta-G solvation = -27211.917342 eV Core-core repulsion = 23393.333242 eV Total energy + Delta-G solvation = -3818.584100 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42119 -40.56084 -38.82126 -37.46698 -36.88059 -34.78180 -34.57369 -32.53562 -30.90662 -29.84280 -27.73667 -26.82242 -23.80002 -23.12011 -23.00415 -22.29543 -21.79314 -21.67818 -20.73386 -19.84696 -18.46016 -17.79953 -17.61727 -17.01824 -16.87307 -16.78556 -16.40889 -16.03097 -15.80221 -15.72717 -15.12113 -14.81104 -14.61433 -14.51929 -14.42036 -14.17255 -13.85463 -13.56150 -13.25394 -13.16157 -12.99108 -12.88853 -12.65381 -12.59230 -12.46444 -12.34666 -12.28287 -12.05571 -11.72539 -11.54568 -11.28520 -11.17981 -11.14001 -10.99196 -10.72016 -10.49646 -10.27310 -10.17411 -10.11409 -8.65736 -8.34493 -6.12004 1.26851 1.42339 1.46856 1.57066 1.60127 1.64957 2.06832 2.26178 2.30490 2.83662 2.99758 3.02659 3.32139 3.56176 3.60794 3.75243 3.87240 3.95966 4.06161 4.09045 4.14159 4.20224 4.25258 4.29170 4.34103 4.40125 4.47124 4.50826 4.57914 4.72168 4.76458 4.83302 4.84285 4.88832 5.00078 5.07271 5.12186 5.22234 5.22575 5.28885 5.33790 5.35772 5.38723 5.42284 5.50172 6.20081 6.43038 6.54522 7.07145 7.20475 7.27285 8.74564 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012651 B = 0.002542 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.708893 B =11013.900454 C =12711.750820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.712 5.712 6 C 0.537 3.463 7 O -0.561 6.561 8 C -0.130 4.130 9 S -0.147 6.147 10 C -0.545 4.545 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.259 1.259 18 N -0.717 5.717 19 C 0.522 3.478 20 O -0.565 6.565 21 C -0.036 4.036 22 C -0.154 4.154 23 C -0.175 4.175 24 C -0.164 4.164 25 C -0.137 4.137 26 C -0.163 4.163 27 C -0.171 4.171 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.411 0.589 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.271 0.729 37 H 0.411 0.589 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.235 5.183 24.610 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.101 0.899 4 C -0.008 4.008 5 N -0.366 5.366 6 C 0.323 3.677 7 O -0.439 6.439 8 C -0.282 4.282 9 S 0.080 5.920 10 C -0.693 4.693 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.192 1.192 16 H -0.204 1.204 17 H -0.183 1.183 18 N -0.370 5.370 19 C 0.309 3.691 20 O -0.443 6.443 21 C -0.057 4.057 22 C -0.172 4.172 23 C -0.212 4.212 24 C -0.201 4.201 25 C -0.155 4.155 26 C -0.200 4.200 27 C -0.208 4.208 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.248 0.752 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.080 0.920 37 H 0.248 0.752 38 H 0.130 0.870 39 H 0.117 0.883 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.106 0.894 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.441 5.196 22.914 28.115 hybrid contribution 2.033 0.341 0.949 2.269 sum -13.408 5.537 23.864 27.927 Atomic orbital electron populations 1.22049 0.92992 1.03296 1.02994 1.21074 0.95583 0.96904 0.82776 0.89851 1.21725 0.79362 1.01799 0.97924 1.45713 1.07747 1.59850 1.23325 1.19988 0.88772 0.76959 0.82021 1.90704 1.70345 1.48416 1.34462 1.23368 0.94862 1.05589 1.04351 1.85552 1.05642 1.74872 1.25917 1.23188 0.91729 1.44232 1.10181 0.90033 1.26105 1.05113 0.93864 0.94034 1.70179 1.37357 1.36486 1.10681 0.84977 0.75940 0.79266 0.77958 1.19204 1.20393 1.18330 1.46087 1.67182 1.14716 1.09008 1.20870 0.76432 0.86844 0.84908 1.90704 1.50940 1.17337 1.85293 1.20454 0.96489 0.97665 0.91057 1.21984 0.95732 0.94960 1.04547 1.23176 1.04062 0.92601 1.01329 1.22977 1.00685 1.02788 0.93613 1.21842 0.97375 1.01501 0.94808 1.23165 1.03010 0.99749 0.94103 1.22762 0.96434 0.98056 1.03580 0.92552 0.90305 0.91010 0.90344 0.90441 0.75235 0.87759 0.87090 0.92007 0.75224 0.87042 0.88331 0.87362 0.88824 0.88728 0.87552 0.88382 0.87734 0.87810 0.89416 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.48 71.98 0.68 -1.43 16 2 C 0.14 2.22 2.73 44.99 0.12 2.35 16 3 H 0.08 1.58 7.58 -2.39 -0.02 1.56 16 4 C 0.12 2.23 5.23 86.38 0.45 2.68 16 5 N -0.71 -16.45 5.39 -463.06 -2.50 -18.95 16 6 C 0.54 18.64 7.85 87.65 0.69 19.33 16 7 O -0.56 -24.67 15.86 -3.04 -0.05 -24.72 16 8 C -0.13 -4.98 6.16 71.24 0.44 -4.54 16 9 S -0.15 -7.99 20.57 -56.49 -1.16 -9.15 16 10 C -0.55 -30.68 9.50 67.95 0.65 -30.03 16 11 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 12 C 0.01 0.77 5.49 84.86 0.47 1.24 16 13 N -0.91 -55.37 13.22 21.65 0.29 -55.09 16 14 Si 1.00 43.11 29.55 68.60 2.03 45.14 16 15 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 18 N -0.72 -9.99 4.42 -442.53 -1.96 -11.95 16 19 C 0.52 9.01 6.97 87.66 0.61 9.62 16 20 O -0.56 -13.96 14.75 -3.03 -0.04 -14.00 16 21 C -0.04 -0.45 2.50 -11.54 -0.03 -0.48 16 22 C -0.15 -1.86 4.93 -10.79 -0.05 -1.92 16 23 C -0.17 -1.89 10.18 30.62 0.31 -1.58 16 24 C -0.16 -1.77 9.88 30.62 0.30 -1.47 16 25 C -0.14 -1.96 4.38 -10.79 -0.05 -2.01 16 26 C -0.16 -1.76 10.18 30.62 0.31 -1.45 16 27 C -0.17 -2.65 8.98 30.62 0.27 -2.37 16 28 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.41 7.68 8.14 -92.70 -0.75 6.93 16 34 H 0.10 3.68 8.14 -2.40 -0.02 3.66 16 35 H 0.11 3.74 8.14 -2.40 -0.02 3.72 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.41 4.61 8.50 -92.71 -0.79 3.82 16 38 H 0.11 1.08 7.66 -2.39 -0.02 1.06 16 39 H 0.10 1.42 8.11 -2.39 -0.02 1.41 16 40 H 0.11 0.90 8.05 -2.39 -0.02 0.88 16 41 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.10 1.60 8.11 -2.39 -0.02 1.58 16 45 H 0.10 0.87 8.05 -2.39 -0.02 0.85 16 46 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 48 H 0.08 1.40 8.10 -2.39 -0.02 1.38 16 Total: -1.00 -76.41 415.67 1.20 -75.21 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -0.58 Total: 25.59 kcal Atomic # 6 Polarization: -17.26 SS G_CDS: 5.18 Total: -12.08 kcal Atomic # 7 Polarization: -81.82 SS G_CDS: -4.17 Total: -85.99 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -0.09 Total: -38.71 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -1.16 Total: -9.15 kcal Total: -76.41 1.20 -75.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738580936.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.596 kcal (2) G-P(sol) polarization free energy of solvation -76.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds