Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47071 * 2 1 4 4 C 1.52995 * 109.47056 * 120.00280 * 2 1 3 5 5 N 1.46508 * 109.46812 * 174.99785 * 4 2 1 6 6 C 1.34777 * 119.99993 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99607 * 0.02562 * 6 5 4 8 8 C 1.50689 * 120.00215 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.47316 * 180.02562 * 8 6 5 10 10 C 1.76209 * 100.00158 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99905 * 0.02562 * 10 9 8 12 12 C 1.38804 * 119.99867 * 179.97438 * 10 9 8 13 13 N 1.31624 * 120.00002 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99625 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47266 * 60.00217 * 14 12 10 16 16 H 1.48502 * 109.46947 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47442 * 300.00014 * 14 12 10 18 18 N 1.46504 * 109.46702 * 240.00186 * 2 1 3 19 19 C 1.34774 * 119.99813 * 85.00238 * 18 2 1 20 20 O 1.21286 * 120.00156 * 359.97438 * 19 18 2 21 21 C 1.50706 * 119.99786 * 179.97438 * 19 18 2 22 22 H 1.08994 * 110.05386 * 334.35684 * 21 19 18 23 23 C 1.54386 * 110.07074 * 212.81471 * 21 19 18 24 24 C 1.54921 * 104.22122 * 217.20324 * 23 21 19 25 25 C 1.54990 * 102.81818 * 37.72797 * 24 23 21 26 26 C 1.53480 * 110.06922 * 95.84726 * 21 19 18 27 27 C 1.52570 * 121.05057 * 263.45469 * 26 21 19 28 28 C 1.52556 * 121.08560 * 335.16721 * 26 21 19 29 29 H 1.08999 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46958 * 300.00001 * 1 2 3 31 31 H 1.09000 * 109.47093 * 59.99878 * 1 2 3 32 32 H 1.08999 * 109.47289 * 294.99415 * 4 2 1 33 33 H 1.09001 * 109.47466 * 54.99888 * 4 2 1 34 34 H 0.96993 * 119.99791 * 359.97438 * 5 4 2 35 35 H 1.09003 * 109.47395 * 300.00546 * 8 6 5 36 36 H 1.09009 * 109.47117 * 60.00213 * 8 6 5 37 37 H 0.96998 * 119.99642 * 180.02562 * 13 12 10 38 38 H 0.96999 * 120.00179 * 264.99859 * 18 2 1 39 39 H 1.08996 * 110.48329 * 98.50869 * 23 21 19 40 40 H 1.09008 * 110.47947 * 335.88804 * 23 21 19 41 41 H 1.09000 * 110.74362 * 279.39478 * 24 23 21 42 42 H 1.09005 * 110.74372 * 156.06237 * 24 23 21 43 43 H 1.08998 * 110.51036 * 81.07442 * 25 24 23 44 44 H 1.09004 * 110.50894 * 203.77974 * 25 24 23 45 45 H 1.09004 * 117.51251 * 217.93658 * 27 26 21 46 46 H 1.08997 * 117.51315 * 3.02993 * 27 26 21 47 47 H 1.08992 * 117.50970 * 357.02973 * 28 26 21 48 48 H 1.09003 * 117.50494 * 142.07901 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1732 -1.4284 2.1910 7 8 3.5701 -1.8834 3.1397 8 6 5.6750 -1.5371 2.1303 9 16 6.2784 -2.3902 3.6081 10 6 8.0102 -2.3773 3.2833 11 1 8.3864 -1.9241 2.3780 12 6 8.8909 -2.9487 4.1913 13 7 8.4324 -3.5006 5.2948 14 14 10.7267 -2.9356 3.8465 15 1 11.1975 -1.5325 3.7244 16 1 11.4445 -3.6038 4.9617 17 1 10.9976 -3.6607 2.5792 18 7 2.0183 -0.6906 -1.1963 19 6 2.1470 -0.0182 -2.3572 20 8 1.8582 1.1585 -2.4117 21 6 2.6498 -0.7285 -3.5876 22 1 3.2666 -1.5803 -3.3015 23 6 3.4642 0.2455 -4.4660 24 6 3.1021 -0.1574 -5.9174 25 6 1.5954 -0.5052 -5.8120 26 6 1.4666 -1.1989 -4.4446 27 6 0.9370 -2.6258 -4.3394 28 6 0.0968 -1.4546 -3.8237 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7518 -0.1584 2.1369 33 1 1.6054 -1.7198 1.2951 34 1 3.9824 -0.4629 0.4314 35 1 5.9630 -2.1006 1.2428 36 1 6.1100 -0.5386 2.0837 37 1 9.0479 -3.8995 5.9295 38 1 2.2490 -1.6318 -1.1528 39 1 4.5320 0.1166 -4.2893 40 1 3.1661 1.2757 -4.2705 41 1 3.6782 -1.0278 -6.2315 42 1 3.2588 0.6776 -6.6004 43 1 0.9914 0.4016 -5.8386 44 1 1.3031 -1.1837 -6.6135 45 1 0.6125 -3.1116 -5.2597 46 1 1.3967 -3.2803 -3.5988 47 1 0.0039 -1.3388 -2.7439 48 1 -0.7804 -1.1694 -4.4045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001738592373.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = -68.561777 kcal Electronic energy + Delta-G solvation = -27187.140556 eV Core-core repulsion = 23368.125012 eV Total energy + Delta-G solvation = -3819.015544 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.93658 -39.37953 -38.45353 -36.46943 -34.51089 -33.67596 -32.44905 -31.70231 -29.58871 -29.20319 -26.23215 -25.99714 -25.39470 -22.98023 -22.60240 -21.07845 -20.80884 -20.38908 -19.29633 -17.90718 -17.43006 -16.82640 -16.30331 -16.14335 -15.88984 -15.50698 -15.04378 -14.82519 -14.78263 -14.64713 -14.06509 -13.81008 -13.55664 -13.23458 -13.14176 -12.94894 -12.86768 -12.85624 -12.60926 -12.29252 -11.97591 -11.86621 -11.79957 -11.45763 -11.32038 -11.26327 -11.06680 -11.05358 -10.97939 -10.78643 -10.66221 -10.45319 -9.85113 -9.78289 -9.52379 -9.39588 -9.08754 -8.98352 -8.27105 -6.52703 -6.23560 -3.94508 2.33657 2.74082 2.99352 3.04138 3.22145 3.26116 3.29201 3.37447 3.67241 3.93600 4.17155 4.18603 4.32135 4.41211 4.43439 4.62486 4.80742 4.82350 4.86114 4.96082 5.02236 5.11034 5.11588 5.21076 5.25464 5.31217 5.32972 5.38566 5.45108 5.49882 5.50279 5.56799 5.63337 5.68203 5.69602 5.71640 5.74662 5.79282 5.84717 5.89215 6.00508 6.10106 6.17535 6.51031 7.17567 7.57205 7.61758 7.94017 8.33025 8.53931 9.21676 10.83809 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.002292 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.822008 B =12211.719981 C =13497.158836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.131 3.869 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.868 5.868 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 N -0.728 5.728 19 C 0.526 3.474 20 O -0.534 6.534 21 C -0.078 4.078 22 H 0.093 0.907 23 C -0.112 4.112 24 C -0.120 4.120 25 C -0.087 4.087 26 C -0.117 4.117 27 C -0.164 4.164 28 C -0.171 4.171 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.399 0.601 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.402 0.598 39 H 0.072 0.928 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.242 5.497 -22.834 28.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.113 0.887 4 C -0.011 4.011 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 N -0.381 5.381 19 C 0.312 3.688 20 O -0.410 6.410 21 C -0.100 4.100 22 H 0.111 0.889 23 C -0.150 4.150 24 C -0.158 4.158 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.201 4.201 28 C -0.208 4.208 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.233 0.767 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.237 0.763 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.424 5.501 -21.080 27.896 hybrid contribution 2.161 0.146 -1.520 2.647 sum -15.262 5.647 -22.600 27.849 Atomic orbital electron populations 1.22112 0.94113 1.02620 1.03097 1.21245 0.94912 0.97869 0.83384 0.88669 1.21609 0.81161 1.01275 0.97087 1.45996 1.06780 1.62084 1.24625 1.20324 0.89534 0.76728 0.81602 1.90711 1.69859 1.45978 1.32444 1.23529 0.93488 1.05713 1.07695 1.85393 1.04622 1.73009 1.20239 1.22824 0.91510 1.44443 1.09692 0.90984 1.24992 0.99606 0.94520 0.94445 1.70003 1.35545 1.35381 1.09345 0.86223 0.82740 0.78491 0.78041 1.19927 1.20795 1.19933 1.46260 1.67865 1.14295 1.09656 1.20520 0.77008 0.87172 0.84086 1.90686 1.49617 1.15979 1.84696 1.21448 0.96442 0.99224 0.92851 0.88887 1.22372 0.99061 0.99805 0.93767 1.22452 0.95601 1.01262 0.96462 1.21875 0.96986 0.99791 0.93736 1.21522 0.94295 0.99004 0.96961 1.23065 1.03380 0.90359 1.03324 1.23028 0.94058 1.02575 1.01162 0.92049 0.91064 0.91599 0.89998 0.90958 0.76743 0.89273 0.89231 0.92104 0.76312 0.90968 0.89525 0.91203 0.91070 0.90936 0.91402 0.88400 0.88518 0.88534 0.88572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 2 C 0.13 1.12 2.73 -67.93 -0.19 0.94 16 3 H 0.10 0.96 7.58 -51.93 -0.39 0.56 16 4 C 0.11 1.18 5.23 -4.04 -0.02 1.16 16 5 N -0.74 -9.20 5.39 -60.29 -0.32 -9.53 16 6 C 0.53 9.51 7.85 -10.99 -0.09 9.43 16 7 O -0.52 -11.31 15.86 5.56 0.09 -11.22 16 8 C -0.15 -3.02 6.15 36.00 0.22 -2.80 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.54 -15.14 9.50 30.94 0.29 -14.85 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 13 N -0.87 -25.99 13.22 55.49 0.73 -25.26 16 14 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 N -0.73 -5.73 4.23 -53.80 -0.23 -5.96 16 19 C 0.53 4.98 5.55 -10.98 -0.06 4.92 16 20 O -0.53 -6.95 15.44 5.55 0.09 -6.86 16 21 C -0.08 -0.60 3.16 -90.79 -0.29 -0.89 16 22 H 0.09 0.60 8.13 -51.93 -0.42 0.18 16 23 C -0.11 -0.87 6.33 -24.99 -0.16 -1.03 16 24 C -0.12 -0.76 6.91 -24.67 -0.17 -0.93 16 25 C -0.09 -0.57 6.58 -25.23 -0.17 -0.74 16 26 C -0.12 -0.83 2.26 -154.26 -0.35 -1.18 16 27 C -0.16 -1.00 10.23 -26.90 -0.28 -1.27 16 28 C -0.17 -1.21 9.63 -26.91 -0.26 -1.47 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.40 4.17 8.14 -40.82 -0.33 3.84 16 35 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 36 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.40 2.67 8.60 -40.82 -0.35 2.32 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.84 6.92 -51.92 -0.36 0.48 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 45 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.10 0.74 7.07 -51.93 -0.37 0.37 16 48 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 407.34 15.07 6.14 6.14 Total: -1.00 -34.90 407.34 -10.10 -45.00 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.11 Total: 2.86 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.25 Total: -7.60 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.18 Total: -40.74 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: 0.17 Total: -18.08 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.90 -10.10 -45.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738592373.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.562 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds