Wall clock time and date at job start Sat Apr 11 2020 06:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47071 * 2 1 4 4 C 1.52995 * 109.47056 * 120.00280 * 2 1 3 5 5 N 1.46508 * 109.46812 * 174.99785 * 4 2 1 6 6 C 1.34777 * 119.99993 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99607 * 0.02562 * 6 5 4 8 8 C 1.50689 * 120.00215 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.47316 * 180.02562 * 8 6 5 10 10 C 1.76209 * 100.00158 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99905 * 0.02562 * 10 9 8 12 12 C 1.38804 * 119.99867 * 179.97438 * 10 9 8 13 13 N 1.31624 * 120.00002 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 119.99625 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47266 * 60.00217 * 14 12 10 16 16 H 1.48502 * 109.46947 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47442 * 300.00014 * 14 12 10 18 18 N 1.46504 * 109.46702 * 240.00186 * 2 1 3 19 19 C 1.34774 * 119.99813 * 85.00238 * 18 2 1 20 20 O 1.21286 * 120.00156 * 359.97438 * 19 18 2 21 21 C 1.50706 * 119.99786 * 179.97438 * 19 18 2 22 22 H 1.08994 * 110.05386 * 334.35684 * 21 19 18 23 23 C 1.54386 * 110.07074 * 212.81471 * 21 19 18 24 24 C 1.54921 * 104.22122 * 217.20324 * 23 21 19 25 25 C 1.54990 * 102.81818 * 37.72797 * 24 23 21 26 26 C 1.53480 * 110.06922 * 95.84726 * 21 19 18 27 27 C 1.52570 * 121.05057 * 263.45469 * 26 21 19 28 28 C 1.52556 * 121.08560 * 335.16721 * 26 21 19 29 29 H 1.08999 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46958 * 300.00001 * 1 2 3 31 31 H 1.09000 * 109.47093 * 59.99878 * 1 2 3 32 32 H 1.08999 * 109.47289 * 294.99415 * 4 2 1 33 33 H 1.09001 * 109.47466 * 54.99888 * 4 2 1 34 34 H 0.96993 * 119.99791 * 359.97438 * 5 4 2 35 35 H 1.09003 * 109.47395 * 300.00546 * 8 6 5 36 36 H 1.09009 * 109.47117 * 60.00213 * 8 6 5 37 37 H 0.96998 * 119.99642 * 180.02562 * 13 12 10 38 38 H 0.96999 * 120.00179 * 264.99859 * 18 2 1 39 39 H 1.08996 * 110.48329 * 98.50869 * 23 21 19 40 40 H 1.09008 * 110.47947 * 335.88804 * 23 21 19 41 41 H 1.09000 * 110.74362 * 279.39478 * 24 23 21 42 42 H 1.09005 * 110.74372 * 156.06237 * 24 23 21 43 43 H 1.08998 * 110.51036 * 81.07442 * 25 24 23 44 44 H 1.09004 * 110.50894 * 203.77974 * 25 24 23 45 45 H 1.09004 * 117.51251 * 217.93658 * 27 26 21 46 46 H 1.08997 * 117.51315 * 3.02993 * 27 26 21 47 47 H 1.08992 * 117.50970 * 357.02973 * 28 26 21 48 48 H 1.09003 * 117.50494 * 142.07901 * 28 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1904 6 6 4.1732 -1.4284 2.1910 7 8 3.5701 -1.8834 3.1397 8 6 5.6750 -1.5371 2.1303 9 16 6.2784 -2.3902 3.6081 10 6 8.0102 -2.3773 3.2833 11 1 8.3864 -1.9241 2.3780 12 6 8.8909 -2.9487 4.1913 13 7 8.4324 -3.5006 5.2948 14 14 10.7267 -2.9356 3.8465 15 1 11.1975 -1.5325 3.7244 16 1 11.4445 -3.6038 4.9617 17 1 10.9976 -3.6607 2.5792 18 7 2.0183 -0.6906 -1.1963 19 6 2.1470 -0.0182 -2.3572 20 8 1.8582 1.1585 -2.4117 21 6 2.6498 -0.7285 -3.5876 22 1 3.2666 -1.5803 -3.3015 23 6 3.4642 0.2455 -4.4660 24 6 3.1021 -0.1574 -5.9174 25 6 1.5954 -0.5052 -5.8120 26 6 1.4666 -1.1989 -4.4446 27 6 0.9370 -2.6258 -4.3394 28 6 0.0968 -1.4546 -3.8237 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7518 -0.1584 2.1369 33 1 1.6054 -1.7198 1.2951 34 1 3.9824 -0.4629 0.4314 35 1 5.9630 -2.1006 1.2428 36 1 6.1100 -0.5386 2.0837 37 1 9.0479 -3.8995 5.9295 38 1 2.2490 -1.6318 -1.1528 39 1 4.5320 0.1166 -4.2893 40 1 3.1661 1.2757 -4.2705 41 1 3.6782 -1.0278 -6.2315 42 1 3.2588 0.6776 -6.6004 43 1 0.9914 0.4016 -5.8386 44 1 1.3031 -1.1837 -6.6135 45 1 0.6125 -3.1116 -5.2597 46 1 1.3967 -3.2803 -3.5988 47 1 0.0039 -1.3388 -2.7439 48 1 -0.7804 -1.1694 -4.4045 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001738592373.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:32 Heat of formation + Delta-G solvation = -91.620479 kcal Electronic energy + Delta-G solvation = -27188.140456 eV Core-core repulsion = 23368.125012 eV Total energy + Delta-G solvation = -3820.015444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64607 -40.63862 -39.20971 -37.41144 -35.11688 -34.74839 -34.57568 -32.55930 -30.90221 -29.89397 -27.73790 -26.89998 -26.67265 -23.58059 -23.22485 -21.83855 -21.71158 -21.42410 -20.05168 -19.70128 -18.18965 -17.86430 -17.62898 -16.96530 -16.87168 -16.74524 -16.45403 -15.96844 -15.89071 -15.45952 -15.33831 -14.85205 -14.53005 -14.45181 -14.25892 -13.91135 -13.77984 -13.58532 -13.43944 -13.26311 -13.16735 -13.02921 -12.86324 -12.62035 -12.54669 -12.36089 -12.09762 -11.97008 -11.82066 -11.74087 -11.53798 -11.17294 -11.12705 -11.11477 -11.00360 -10.42981 -10.28089 -10.21384 -10.15553 -8.66175 -8.34356 -6.12225 1.26610 1.44042 1.46676 1.56101 1.58777 1.60264 2.04252 2.26024 2.29732 2.84245 2.99804 3.31807 3.39251 3.53625 3.63050 3.83881 3.87457 3.94887 4.03531 4.07833 4.22883 4.27591 4.29516 4.33667 4.47839 4.50759 4.56022 4.66882 4.69463 4.74270 4.76932 4.80469 4.93067 4.95513 5.00900 5.05829 5.13915 5.17915 5.19966 5.24341 5.26677 5.36013 5.41984 5.42609 5.49676 6.19865 6.41863 6.49424 7.07052 7.19270 7.22188 8.74491 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013656 B = 0.002292 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.822008 B =12211.719981 C =13497.158836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.142 3.858 3 H 0.083 0.917 4 C 0.117 3.883 5 N -0.713 5.713 6 C 0.536 3.464 7 O -0.561 6.561 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.547 4.547 11 H 0.082 0.918 12 C 0.014 3.986 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.263 1.263 16 H -0.279 1.279 17 H -0.261 1.261 18 N -0.718 5.718 19 C 0.527 3.473 20 O -0.573 6.573 21 C -0.077 4.077 22 H 0.110 0.890 23 C -0.115 4.115 24 C -0.116 4.116 25 C -0.087 4.087 26 C -0.126 4.126 27 C -0.150 4.150 28 C -0.182 4.182 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.412 0.588 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.271 0.729 38 H 0.411 0.589 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.089 0.911 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.606 5.221 -25.054 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.101 0.899 4 C -0.007 4.007 5 N -0.367 5.367 6 C 0.322 3.678 7 O -0.439 6.439 8 C -0.282 4.282 9 S 0.079 5.921 10 C -0.695 4.695 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.186 1.186 18 N -0.371 5.371 19 C 0.315 3.685 20 O -0.451 6.451 21 C -0.099 4.099 22 H 0.128 0.872 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.187 4.187 28 C -0.219 4.219 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.248 0.752 35 H 0.130 0.870 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.126 0.874 46 H 0.123 0.877 47 H 0.108 0.892 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.804 5.231 -23.347 29.238 hybrid contribution 1.840 0.299 -0.898 2.069 sum -14.965 5.530 -24.246 29.024 Atomic orbital electron populations 1.22058 0.93017 1.03313 1.02991 1.21082 0.95583 0.96916 0.82752 0.89852 1.21717 0.79369 1.01791 0.97857 1.45720 1.07739 1.59932 1.23349 1.19997 0.88795 0.76956 0.82019 1.90705 1.70335 1.48384 1.34478 1.23375 0.94833 1.05663 1.04360 1.85551 1.05743 1.74947 1.25846 1.23170 0.91758 1.44442 1.10129 0.89965 1.26112 1.05152 0.93822 0.94028 1.70169 1.37456 1.36501 1.10578 0.85024 0.75818 0.79017 0.78272 1.18810 1.20440 1.18551 1.46182 1.67235 1.14611 1.09074 1.20852 0.76241 0.86677 0.84731 1.90675 1.51411 1.17753 1.85290 1.21504 0.96913 0.99461 0.91977 0.87170 1.22365 0.99471 0.98545 0.94893 1.22451 0.95480 1.01850 0.95552 1.21883 0.97024 0.99537 0.94019 1.21579 0.94005 1.00079 0.96957 1.23136 1.02045 0.89748 1.03758 1.23039 0.94234 1.03828 1.00790 0.90955 0.90234 0.92643 0.90325 0.90411 0.75163 0.87039 0.87627 0.91990 0.75220 0.90241 0.91893 0.90042 0.90692 0.92194 0.90126 0.87372 0.87743 0.89237 0.88589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 9.48 71.98 0.68 -1.47 16 2 C 0.14 2.23 2.73 44.99 0.12 2.35 16 3 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16 4 C 0.12 2.23 5.23 86.38 0.45 2.68 16 5 N -0.71 -16.37 5.39 -463.06 -2.50 -18.86 16 6 C 0.54 18.60 7.85 87.65 0.69 19.29 16 7 O -0.56 -24.65 15.86 -3.04 -0.05 -24.69 16 8 C -0.13 -5.00 6.15 71.23 0.44 -4.56 16 9 S -0.15 -8.05 20.57 -56.49 -1.16 -9.22 16 10 C -0.55 -30.81 9.50 67.96 0.65 -30.16 16 11 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 12 C 0.01 0.77 5.49 84.86 0.47 1.24 16 13 N -0.91 -55.44 13.22 21.65 0.29 -55.15 16 14 Si 1.00 43.07 29.55 68.60 2.03 45.10 16 15 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 17 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 18 N -0.72 -10.07 4.23 -442.52 -1.87 -11.94 16 19 C 0.53 9.43 5.55 87.66 0.49 9.91 16 20 O -0.57 -14.83 15.44 -3.05 -0.05 -14.88 16 21 C -0.08 -1.06 3.16 -10.91 -0.03 -1.09 16 22 H 0.11 1.12 8.13 -2.39 -0.02 1.10 16 23 C -0.11 -1.66 6.33 31.72 0.20 -1.46 16 24 C -0.12 -1.29 6.91 31.93 0.22 -1.07 16 25 C -0.09 -1.04 6.58 31.57 0.21 -0.83 16 26 C -0.13 -1.57 2.26 -52.02 -0.12 -1.69 16 27 C -0.15 -1.45 10.23 30.48 0.31 -1.14 16 28 C -0.18 -2.33 9.63 30.48 0.29 -2.04 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.41 7.55 8.14 -92.71 -0.75 6.79 16 35 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 36 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 37 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 38 H 0.41 4.43 8.60 -92.71 -0.80 3.63 16 39 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.06 1.22 6.92 -2.38 -0.02 1.21 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.08 0.74 8.11 -2.38 -0.02 0.72 16 45 H 0.11 0.84 8.14 -2.38 -0.02 0.83 16 46 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.09 1.26 7.07 -2.39 -0.02 1.24 16 48 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -77.52 407.34 1.17 -76.35 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.59 Total: 23.32 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 5.07 Total: -10.04 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -4.08 Total: -85.96 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.10 Total: -39.57 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -8.05 SS G_CDS: -1.16 Total: -9.22 kcal Total: -77.52 1.17 -76.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001738592373.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.268 kcal (2) G-P(sol) polarization free energy of solvation -77.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds