Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21286 * 119.99649 * 2 1 4 4 N 1.34778 * 120.00069 * 179.97438 * 2 1 3 5 5 C 1.46924 * 120.63050 * 179.97438 * 4 2 1 6 6 C 1.53190 * 108.77606 * 126.37534 * 5 4 2 7 7 C 1.53034 * 109.34238 * 54.61557 * 6 5 4 8 8 C 1.52997 * 109.46535 * 178.63126 * 7 6 5 9 9 H 1.08996 * 109.87567 * 299.49955 * 8 7 6 10 10 C 1.54332 * 109.87999 * 60.67035 * 8 7 6 11 11 C 1.55151 * 102.94383 * 141.61292 * 10 8 7 12 12 C 1.54915 * 101.57879 * 324.49601 * 11 10 8 13 13 N 1.47016 * 109.88501 * 178.47677 * 8 7 6 14 14 C 1.34773 * 125.64781 * 61.60885 * 13 8 7 15 15 O 1.21280 * 119.99878 * 5.38456 * 14 13 8 16 16 C 1.50707 * 119.99978 * 185.38062 * 14 13 8 17 17 S 1.80996 * 109.46960 * 180.02562 * 16 14 13 18 18 C 1.76208 * 99.99871 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99837 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99740 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99880 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 120.00334 * 0.02562 * 20 18 17 23 23 H 1.48505 * 109.47037 * 89.99778 * 22 20 18 24 24 H 1.48495 * 109.47203 * 209.99769 * 22 20 18 25 25 H 1.48497 * 109.47230 * 329.99747 * 22 20 18 26 26 C 1.53038 * 109.53937 * 298.68967 * 7 6 5 27 27 C 1.46927 * 120.63072 * 359.97438 * 4 2 1 28 28 H 1.09000 * 109.47190 * 240.00598 * 1 2 3 29 29 H 1.09000 * 109.47212 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.46859 * 120.00517 * 1 2 3 31 31 H 1.08997 * 109.58727 * 6.58578 * 5 4 2 32 32 H 1.08997 * 109.70584 * 246.23249 * 5 4 2 33 33 H 1.09003 * 109.49892 * 174.59050 * 6 5 4 34 34 H 1.09003 * 109.49285 * 294.65031 * 6 5 4 35 35 H 1.08997 * 109.45711 * 58.67034 * 7 6 5 36 36 H 1.09000 * 110.71836 * 259.97739 * 10 8 7 37 37 H 1.09004 * 110.71719 * 23.24747 * 10 8 7 38 38 H 1.08999 * 111.00363 * 206.42345 * 11 10 8 39 39 H 1.08996 * 111.00670 * 82.56747 * 11 10 8 40 40 H 1.08995 * 110.36786 * 278.17112 * 12 11 10 41 41 H 1.09001 * 110.45695 * 155.89636 * 12 11 10 42 42 H 1.08997 * 109.46714 * 299.99741 * 16 14 13 43 43 H 1.09001 * 109.46925 * 60.00006 * 16 14 13 44 44 H 0.97000 * 120.00162 * 179.97438 * 21 20 18 45 45 H 1.09007 * 109.47248 * 301.35928 * 26 7 6 46 46 H 1.08999 * 109.52310 * 181.29687 * 26 7 6 47 47 H 1.09004 * 109.58455 * 353.40751 * 27 4 2 48 48 H 1.08995 * 109.58704 * 113.83607 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6501 -1.1834 0.0000 6 6 4.1341 -2.0481 1.1681 7 6 3.4903 -3.4333 1.0742 8 6 3.9982 -4.3103 2.2203 9 1 5.0805 -4.4194 2.1519 10 6 3.6158 -3.6771 3.5749 11 6 3.2451 -4.9091 4.4420 12 6 2.5793 -5.8371 3.3954 13 7 3.3576 -5.6322 2.1602 14 6 3.4636 -6.5109 1.1437 15 8 4.2100 -6.2784 0.2165 16 6 2.6547 -7.7824 1.1594 17 16 3.0152 -8.7451 -0.3303 18 6 1.9655 -10.1340 -0.0584 19 1 1.3567 -10.1846 0.8322 20 6 1.9211 -11.1630 -0.9889 21 7 1.1373 -12.2007 -0.7856 22 14 2.9747 -11.0758 -2.5290 23 1 4.2926 -11.7065 -2.2635 24 1 2.2949 -11.7963 -3.6352 25 1 3.1741 -9.6551 -2.9125 26 6 1.9689 -3.2982 1.1702 27 6 1.4604 -2.4476 0.0017 28 1 -0.3633 -0.5137 0.8900 29 1 -0.3634 1.0277 -0.0005 30 1 -0.3633 -0.5139 -0.8899 31 1 4.0267 -0.1672 0.1169 32 1 4.0127 -1.6016 -0.9390 33 1 5.2187 -2.1471 1.1226 34 1 3.8509 -1.5785 2.1101 35 1 3.7541 -3.8924 0.1215 36 1 4.4641 -3.1443 4.0045 37 1 2.7589 -3.0130 3.4619 38 1 2.5398 -4.6363 5.2270 39 1 4.1368 -5.3726 4.8640 40 1 1.5394 -5.5498 3.2406 41 1 2.6412 -6.8775 3.7146 42 1 2.9147 -8.3675 2.0415 43 1 1.5929 -7.5372 1.1859 44 1 1.1060 -12.9197 -1.4360 45 1 1.7056 -2.8171 2.1123 46 1 1.5120 -4.2868 1.1264 47 1 0.3921 -2.2657 0.1199 48 1 1.6425 -2.9702 -0.9374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001743317215.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = -76.205088 kcal Electronic energy + Delta-G solvation = -28320.920890 eV Core-core repulsion = 24501.573907 eV Total energy + Delta-G solvation = -3819.346983 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88822 -39.87522 -37.90936 -36.80829 -33.71130 -32.47478 -31.84117 -31.73417 -30.05319 -29.28135 -28.17891 -25.65478 -25.08148 -23.58703 -23.02214 -22.13641 -20.53953 -19.28782 -18.66049 -17.71692 -17.28786 -16.87728 -16.37736 -16.02764 -15.72267 -15.21542 -15.06744 -14.93572 -14.42862 -14.21011 -14.11430 -13.85511 -13.60085 -13.42814 -13.19129 -13.06959 -12.98727 -12.80764 -12.51969 -12.45391 -12.29829 -12.15192 -11.91313 -11.63451 -11.44317 -11.29129 -11.23997 -11.04037 -10.86211 -10.75745 -10.62667 -10.45222 -10.03029 -9.88687 -9.49357 -9.03645 -8.94684 -8.56833 -8.53237 -6.95666 -6.32240 -4.04201 2.37066 2.65431 2.75046 2.90907 3.16799 3.30529 3.47308 3.56742 4.20891 4.25857 4.30104 4.34015 4.42735 4.59455 4.69654 4.71475 4.72310 4.80604 4.91215 5.00121 5.03880 5.05741 5.07047 5.11902 5.16974 5.22551 5.28592 5.45862 5.48044 5.49873 5.51601 5.58940 5.60565 5.65544 5.67300 5.72934 5.76667 5.82238 5.84890 5.97595 6.01716 6.17293 6.27779 6.44282 7.14055 7.57349 7.90663 7.90836 8.38135 8.41831 9.14008 10.77022 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.002928 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.525925 B = 9559.419092 C =10539.240069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.553 6.553 4 N -0.611 5.611 5 C 0.110 3.890 6 C -0.124 4.124 7 C -0.100 4.100 8 C 0.147 3.853 9 H 0.075 0.925 10 C -0.131 4.131 11 C -0.133 4.133 12 C 0.099 3.901 13 N -0.619 5.619 14 C 0.548 3.452 15 O -0.515 6.515 16 C -0.118 4.118 17 S -0.142 6.142 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 C -0.127 4.127 27 C 0.105 3.895 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.271 0.729 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.019 21.607 9.610 23.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.301 3.699 3 O -0.432 6.432 4 N -0.345 5.345 5 C -0.012 4.012 6 C -0.163 4.163 7 C -0.119 4.119 8 C 0.043 3.957 9 H 0.093 0.907 10 C -0.169 4.169 11 C -0.171 4.171 12 C -0.024 4.024 13 N -0.356 5.356 14 C 0.336 3.664 15 O -0.390 6.390 16 C -0.269 4.269 17 S 0.084 5.916 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 C -0.165 4.165 27 C -0.017 4.017 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.338 22.251 8.089 23.714 hybrid contribution -0.639 -0.830 0.476 1.151 sum 0.699 21.421 8.565 23.080 Atomic orbital electron populations 1.21946 0.91895 1.05317 1.04243 1.20814 0.90657 0.82997 0.75408 1.90700 1.70842 1.31115 1.50506 1.48183 1.07078 1.06102 1.73106 1.21586 0.79337 1.01649 0.98617 1.21911 1.00737 0.94852 0.98781 1.21481 0.94962 0.94933 1.00558 1.21492 0.97456 0.82293 0.94474 0.90702 1.22805 1.02382 0.97624 0.94073 1.22768 1.01319 0.95759 0.97218 1.22321 0.95370 1.00665 0.84048 1.48526 1.51078 1.16904 1.19091 1.19949 0.82085 0.83708 0.80659 1.90695 1.37790 1.76194 1.34303 1.23269 1.02367 0.96176 1.05050 1.84790 1.60185 1.22019 1.24574 1.22300 1.28478 1.04334 1.11726 0.89426 1.24708 0.94685 0.93987 0.97892 1.69934 1.37174 1.08344 1.36242 0.86741 0.80961 0.81285 0.82900 1.19210 1.19931 1.15935 1.21972 0.96014 1.00361 0.98112 1.21834 0.96563 0.83678 0.99663 0.89364 0.89107 0.89314 0.89032 0.91348 0.90503 0.91345 0.89264 0.90282 0.90067 0.89932 0.90569 0.91381 0.90313 0.88777 0.88650 0.91917 0.91307 0.90316 0.89505 0.90824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 8.67 36.01 0.31 -0.84 16 2 C 0.51 5.41 7.81 -10.98 -0.09 5.32 16 3 O -0.55 -8.06 16.50 5.55 0.09 -7.97 16 4 N -0.61 -5.82 2.97 -172.76 -0.51 -6.34 16 5 C 0.11 1.07 6.43 -3.71 -0.02 1.04 16 6 C -0.12 -1.05 5.10 -26.62 -0.14 -1.19 16 7 C -0.10 -0.99 1.88 -90.58 -0.17 -1.16 16 8 C 0.15 1.49 2.65 -66.95 -0.18 1.31 16 9 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 10 C -0.13 -0.92 5.23 -24.90 -0.13 -1.05 16 11 C -0.13 -0.91 7.09 -24.58 -0.17 -1.08 16 12 C 0.10 0.90 6.65 -2.52 -0.02 0.89 16 13 N -0.62 -7.59 2.24 -163.01 -0.36 -7.95 16 14 C 0.55 9.31 7.61 -10.98 -0.08 9.23 16 15 O -0.52 -10.56 15.11 5.56 0.08 -10.48 16 16 C -0.12 -2.21 5.25 36.01 0.19 -2.02 16 17 S -0.14 -3.51 18.55 -107.50 -1.99 -5.50 16 18 C -0.52 -14.70 10.04 30.94 0.31 -14.39 16 19 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 20 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 21 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 22 Si 0.86 21.48 27.74 -169.99 -4.72 16.76 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 26 C -0.13 -1.09 4.93 -26.60 -0.13 -1.23 16 27 C 0.11 0.86 6.34 -3.70 -0.02 0.84 16 28 H 0.09 0.43 7.69 -51.93 -0.40 0.03 16 29 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 30 H 0.09 0.47 7.94 -51.93 -0.41 0.05 16 31 H 0.09 0.97 7.00 -51.93 -0.36 0.61 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.55 7.14 -51.93 -0.37 0.18 16 35 H 0.09 1.19 7.07 -51.93 -0.37 0.82 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.53 5.49 -51.93 -0.29 0.25 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.74 7.51 -51.93 -0.39 0.35 16 42 H 0.09 1.67 7.76 -51.92 -0.40 1.27 16 43 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.07 0.52 6.11 -51.93 -0.32 0.20 16 46 H 0.08 0.79 7.54 -51.93 -0.39 0.39 16 47 H 0.09 0.53 5.93 -51.93 -0.31 0.22 16 48 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 384.13 15.07 5.79 5.79 Total: -1.00 -35.12 384.13 -9.10 -44.22 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -7.81 Total: -1.42 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -0.44 Total: -1.66 kcal Atomic # 7 Polarization: -39.63 SS G_CDS: -0.10 Total: -39.73 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: 0.18 Total: -18.45 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.72 Total: 16.76 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -1.99 Total: -5.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.12 -9.10 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743317215.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.986 kcal (2) G-P(sol) polarization free energy of solvation -35.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds