Wall clock time and date at job start Sat Apr 11 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99952 * 2 1 4 4 C 1.53001 * 109.47299 * 269.99668 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.52997 * 115.54863 * 180.02562 * 9 7 6 11 11 C 1.52999 * 117.50099 * 34.33104 * 10 9 7 12 12 C 1.52994 * 117.50166 * 325.66949 * 10 9 7 13 13 C 1.52999 * 117.49751 * 34.33100 * 9 7 6 14 14 C 1.53003 * 117.49683 * 325.67050 * 9 7 6 15 15 C 1.34783 * 119.99828 * 180.02562 * 2 1 3 16 16 O 1.21280 * 119.99487 * 180.02562 * 15 2 1 17 17 C 1.50697 * 120.00204 * 359.97438 * 15 2 1 18 18 S 1.80993 * 109.47069 * 180.02562 * 17 15 2 19 19 C 1.76209 * 99.99957 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99743 * 359.97438 * 19 18 17 21 21 C 1.38791 * 120.00006 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00059 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00170 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46888 * 89.99968 * 23 21 19 25 25 H 1.48492 * 109.47332 * 209.99739 * 23 21 19 26 26 H 1.48492 * 109.47297 * 330.00306 * 23 21 19 27 27 H 1.09007 * 109.47118 * 89.99687 * 1 2 3 28 28 H 1.08996 * 109.47221 * 209.99643 * 1 2 3 29 29 H 1.08996 * 109.47234 * 330.00147 * 1 2 3 30 30 H 1.09001 * 109.46596 * 149.99898 * 3 2 1 31 31 H 1.09002 * 109.47129 * 30.00253 * 3 2 1 32 32 H 1.09001 * 109.46652 * 60.00269 * 4 3 2 33 33 H 1.08992 * 109.47514 * 300.00358 * 4 3 2 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 36 36 H 0.97000 * 120.00420 * 0.02562 * 6 5 4 37 37 H 1.09000 * 115.54919 * 180.02562 * 10 9 7 38 38 H 1.09005 * 117.49507 * 359.97438 * 11 10 9 39 39 H 1.08998 * 117.50265 * 145.01700 * 11 10 9 40 40 H 1.08999 * 117.50057 * 214.98372 * 12 10 9 41 41 H 1.09006 * 117.49721 * 359.97438 * 12 10 9 42 42 H 1.08997 * 117.50134 * 359.97438 * 13 9 7 43 43 H 1.09005 * 117.49669 * 145.02220 * 13 9 7 44 44 H 1.09000 * 117.49553 * 214.97571 * 14 9 7 45 45 H 1.08993 * 117.50274 * 359.97438 * 14 9 7 46 46 H 1.08998 * 109.47005 * 300.01070 * 17 15 2 47 47 H 1.09002 * 109.46816 * 60.00508 * 17 15 2 48 48 H 0.97005 * 119.99845 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2170 3.0358 -1.4424 6 7 3.4607 3.4590 -2.8236 7 6 4.1232 4.6066 -3.0698 8 8 4.5171 5.2891 -2.1480 9 6 4.3734 5.0422 -4.4906 10 6 5.1346 6.3595 -4.6525 11 6 6.2090 6.6869 -3.6137 12 6 4.8838 7.4529 -3.6122 13 6 3.2992 4.7143 -5.5296 14 6 4.6248 3.9488 -5.5309 15 6 2.1389 -1.1673 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3854 -2.4724 -0.0005 18 16 2.5615 -3.8480 -0.0005 19 6 1.4414 -5.2083 -0.0013 20 1 0.3762 -5.0305 -0.0012 21 6 1.9281 -6.5080 -0.0020 22 7 1.0914 -7.5242 -0.0021 23 14 3.7707 -6.8155 -0.0030 24 1 4.2595 -6.8975 1.3969 25 1 4.0591 -8.0926 -0.7035 26 1 4.4582 -5.7007 -0.7027 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.1499 1.1383 0.5139 31 1 1.6084 2.0284 0.5139 32 1 1.5001 1.8408 -1.9563 33 1 3.0416 0.9508 -1.9563 34 1 2.6275 3.7952 -0.9286 35 1 4.1694 2.9058 -0.9284 36 1 3.1453 2.9133 -3.5609 37 1 5.3152 6.6748 -5.6802 38 1 6.3733 5.9640 -2.8146 39 1 7.0967 7.2177 -3.9577 40 1 4.9000 8.4874 -3.9553 41 1 4.1760 7.2339 -2.8126 42 1 2.4117 4.1832 -5.1856 43 1 3.1347 5.4371 -6.3288 44 1 5.3318 4.1683 -6.3309 45 1 4.6097 2.9145 -5.1876 46 1 0.7589 -2.5302 0.8896 47 1 0.7584 -2.5299 -0.8904 48 1 1.4316 -8.4326 -0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001743520203.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:50 Heat of formation + Delta-G solvation = -21.092651 kcal Electronic energy + Delta-G solvation = -26407.036620 eV Core-core repulsion = 22590.079492 eV Total energy + Delta-G solvation = -3816.957128 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87691 -39.66864 -37.71229 -36.50377 -35.85050 -34.77008 -32.46640 -32.09316 -29.36170 -27.22766 -25.86878 -25.58258 -24.63568 -23.16696 -22.56966 -22.31312 -21.84341 -19.89812 -19.28703 -17.72894 -17.19758 -16.92892 -16.65768 -16.05421 -15.77254 -15.71185 -15.38413 -15.03591 -14.89700 -14.50444 -14.10612 -13.81764 -13.57186 -13.49937 -13.16906 -12.83019 -12.74848 -12.71390 -12.62498 -12.30992 -12.18327 -12.02492 -11.88428 -11.81086 -11.47503 -11.29006 -11.25535 -11.06331 -11.02569 -10.62181 -10.45992 -9.90141 -9.87698 -9.81963 -9.54137 -9.38871 -9.03037 -8.71730 -8.52466 -6.95387 -6.31634 -4.03764 2.08952 2.59336 2.77466 2.90149 3.18052 3.23777 3.31228 3.48169 3.56403 3.80926 3.96511 4.06202 4.30398 4.45088 4.45924 4.52263 4.69009 4.70656 4.79481 4.89238 4.90971 4.97383 4.98828 5.07349 5.08363 5.09599 5.24269 5.28698 5.33812 5.37056 5.39209 5.52302 5.53025 5.53356 5.59134 5.66167 5.73923 5.81911 5.86612 5.96517 5.97986 6.13341 6.14513 6.49045 7.12224 7.35588 7.88535 7.91309 8.36876 8.38574 9.14556 10.77481 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.001858 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.780769 B =15065.559314 C =15629.814077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.623 5.623 3 C 0.123 3.877 4 C -0.148 4.148 5 C 0.124 3.876 6 N -0.729 5.729 7 C 0.548 3.452 8 O -0.529 6.529 9 C -0.126 4.126 10 C -0.118 4.118 11 C -0.167 4.167 12 C -0.168 4.168 13 C -0.155 4.155 14 C -0.155 4.155 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.121 4.121 18 S -0.144 6.144 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 H 0.055 0.945 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.400 0.600 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.910 28.097 -9.784 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.359 5.359 3 C -0.001 4.001 4 C -0.188 4.188 5 C 0.000 4.000 6 N -0.381 5.381 7 C 0.335 3.665 8 O -0.406 6.406 9 C -0.129 4.129 10 C -0.137 4.137 11 C -0.204 4.204 12 C -0.205 4.205 13 C -0.192 4.192 14 C -0.192 4.192 15 C 0.319 3.681 16 O -0.390 6.390 17 C -0.272 4.272 18 S 0.083 5.917 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.160 1.160 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.234 0.766 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.946 28.371 -9.077 29.933 hybrid contribution -1.097 -0.726 -0.431 1.385 sum 1.849 27.645 -9.508 29.293 Atomic orbital electron populations 1.21820 0.79348 1.03397 1.01906 1.47824 1.06980 1.05536 1.75570 1.21248 0.98485 0.84892 0.95506 1.22181 1.00871 0.96516 0.99187 1.21276 1.00678 0.95575 0.82471 1.45983 1.58660 1.24168 1.09254 1.19457 0.77170 0.80413 0.89469 1.90658 1.50532 1.53485 1.45916 1.20979 1.05052 0.97604 0.89272 1.21381 1.03118 0.93234 0.95941 1.23058 0.92161 1.03837 1.01371 1.23047 1.00889 0.95171 1.01344 1.23123 0.92740 1.03215 1.00132 1.23146 0.99778 0.96188 1.00097 1.20348 0.87949 0.84675 0.75165 1.90698 1.13686 1.86834 1.47776 1.23314 1.03093 0.95164 1.05603 1.84801 1.11959 0.97557 1.97417 1.22300 0.94841 0.90885 1.58861 0.89399 1.24712 0.98542 0.94876 0.93162 1.69940 1.34794 0.98884 1.48005 0.86735 0.85339 0.79815 0.79963 1.19192 1.19932 1.15952 0.92659 0.90448 0.91197 0.89455 0.90411 0.91161 0.90439 0.91247 0.90954 0.76580 0.87274 0.87410 0.89503 0.89558 0.87473 0.88085 0.87421 0.87367 0.87925 0.88506 0.88526 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.28 59.85 0.62 1.32 16 2 N -0.62 -7.68 2.87 -181.57 -0.52 -8.20 16 3 C 0.12 1.24 5.45 -4.04 -0.02 1.22 16 4 C -0.15 -1.30 5.65 -26.73 -0.15 -1.46 16 5 C 0.12 1.08 5.67 -4.04 -0.02 1.06 16 6 N -0.73 -6.01 5.36 -60.29 -0.32 -6.33 16 7 C 0.55 5.48 7.24 -10.98 -0.08 5.40 16 8 O -0.53 -6.88 11.83 5.56 0.07 -6.81 16 9 C -0.13 -0.97 2.46 -155.66 -0.38 -1.36 16 10 C -0.12 -0.95 5.84 -90.62 -0.53 -1.48 16 11 C -0.17 -1.55 9.66 -26.70 -0.26 -1.81 16 12 C -0.17 -1.50 9.66 -26.70 -0.26 -1.76 16 13 C -0.15 -0.82 9.60 -26.69 -0.26 -1.07 16 14 C -0.15 -0.89 9.60 -26.69 -0.26 -1.14 16 15 C 0.53 9.17 7.69 -10.98 -0.08 9.09 16 16 O -0.52 -10.76 15.44 5.56 0.09 -10.68 16 17 C -0.12 -2.29 4.71 36.00 0.17 -2.12 16 18 S -0.14 -3.59 18.55 -107.50 -1.99 -5.59 16 19 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 20 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 21 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 22 N -0.88 -26.26 13.97 55.49 0.78 -25.49 16 23 Si 0.86 21.60 27.74 -169.99 -4.71 16.89 16 24 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.73 6.44 -51.93 -0.33 0.39 16 29 H 0.07 0.45 7.89 -51.93 -0.41 0.04 16 30 H 0.09 1.05 7.42 -51.93 -0.39 0.67 16 31 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 2.51 6.66 -40.82 -0.27 2.24 16 37 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.11 1.24 6.28 -51.93 -0.33 0.91 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.11 1.17 6.28 -51.93 -0.33 0.84 16 42 H 0.10 0.45 7.55 -51.93 -0.39 0.06 16 43 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.11 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.56 7.55 -51.93 -0.39 0.17 16 46 H 0.10 1.71 7.40 -51.92 -0.38 1.32 16 47 H 0.10 1.70 8.11 -51.92 -0.42 1.28 16 48 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -35.06 403.01 -9.71 -44.78 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -7.86 Total: 1.30 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -1.30 Total: -5.94 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -0.07 Total: -40.02 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.15 Total: -17.49 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.06 -9.71 -44.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743520203.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.684 kcal (2) G-P(sol) polarization free energy of solvation -35.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds