Wall clock time and date at job start Sat Apr 11 2020 06:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99952 * 2 1 4 4 C 1.53001 * 109.47299 * 269.99668 * 3 2 1 5 5 C 1.53000 * 109.46886 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.46840 * 180.02562 * 5 4 3 7 7 C 1.34779 * 119.99872 * 180.02562 * 6 5 4 8 8 O 1.21278 * 120.00071 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.52997 * 115.54863 * 180.02562 * 9 7 6 11 11 C 1.52999 * 117.50099 * 34.33104 * 10 9 7 12 12 C 1.52994 * 117.50166 * 325.66949 * 10 9 7 13 13 C 1.52999 * 117.49751 * 34.33100 * 9 7 6 14 14 C 1.53003 * 117.49683 * 325.67050 * 9 7 6 15 15 C 1.34783 * 119.99828 * 180.02562 * 2 1 3 16 16 O 1.21280 * 119.99487 * 180.02562 * 15 2 1 17 17 C 1.50697 * 120.00204 * 359.97438 * 15 2 1 18 18 S 1.80993 * 109.47069 * 180.02562 * 17 15 2 19 19 C 1.76209 * 99.99957 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99743 * 359.97438 * 19 18 17 21 21 C 1.38791 * 120.00006 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00059 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00170 * 359.97438 * 21 19 18 24 24 H 1.48500 * 109.46888 * 89.99968 * 23 21 19 25 25 H 1.48492 * 109.47332 * 209.99739 * 23 21 19 26 26 H 1.48492 * 109.47297 * 330.00306 * 23 21 19 27 27 H 1.09007 * 109.47118 * 89.99687 * 1 2 3 28 28 H 1.08996 * 109.47221 * 209.99643 * 1 2 3 29 29 H 1.08996 * 109.47234 * 330.00147 * 1 2 3 30 30 H 1.09001 * 109.46596 * 149.99898 * 3 2 1 31 31 H 1.09002 * 109.47129 * 30.00253 * 3 2 1 32 32 H 1.09001 * 109.46652 * 60.00269 * 4 3 2 33 33 H 1.08992 * 109.47514 * 300.00358 * 4 3 2 34 34 H 1.09002 * 109.47398 * 300.00496 * 5 4 3 35 35 H 1.09001 * 109.47194 * 60.00677 * 5 4 3 36 36 H 0.97000 * 120.00420 * 0.02562 * 6 5 4 37 37 H 1.09000 * 115.54919 * 180.02562 * 10 9 7 38 38 H 1.09005 * 117.49507 * 359.97438 * 11 10 9 39 39 H 1.08998 * 117.50265 * 145.01700 * 11 10 9 40 40 H 1.08999 * 117.50057 * 214.98372 * 12 10 9 41 41 H 1.09006 * 117.49721 * 359.97438 * 12 10 9 42 42 H 1.08997 * 117.50134 * 359.97438 * 13 9 7 43 43 H 1.09005 * 117.49669 * 145.02220 * 13 9 7 44 44 H 1.09000 * 117.49553 * 214.97571 * 14 9 7 45 45 H 1.08993 * 117.50274 * 359.97438 * 14 9 7 46 46 H 1.08998 * 109.47005 * 300.01070 * 17 15 2 47 47 H 1.09002 * 109.46816 * 60.00508 * 17 15 2 48 48 H 0.97005 * 119.99845 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2170 3.0358 -1.4424 6 7 3.4607 3.4590 -2.8236 7 6 4.1232 4.6066 -3.0698 8 8 4.5171 5.2891 -2.1480 9 6 4.3734 5.0422 -4.4906 10 6 5.1346 6.3595 -4.6525 11 6 6.2090 6.6869 -3.6137 12 6 4.8838 7.4529 -3.6122 13 6 3.2992 4.7143 -5.5296 14 6 4.6248 3.9488 -5.5309 15 6 2.1389 -1.1673 -0.0005 16 8 3.3517 -1.1672 -0.0001 17 6 1.3854 -2.4724 -0.0005 18 16 2.5615 -3.8480 -0.0005 19 6 1.4414 -5.2083 -0.0013 20 1 0.3762 -5.0305 -0.0012 21 6 1.9281 -6.5080 -0.0020 22 7 1.0914 -7.5242 -0.0021 23 14 3.7707 -6.8155 -0.0030 24 1 4.2595 -6.8975 1.3969 25 1 4.0591 -8.0926 -0.7035 26 1 4.4582 -5.7007 -0.7027 27 1 -0.3634 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 3.1499 1.1383 0.5139 31 1 1.6084 2.0284 0.5139 32 1 1.5001 1.8408 -1.9563 33 1 3.0416 0.9508 -1.9563 34 1 2.6275 3.7952 -0.9286 35 1 4.1694 2.9058 -0.9284 36 1 3.1453 2.9133 -3.5609 37 1 5.3152 6.6748 -5.6802 38 1 6.3733 5.9640 -2.8146 39 1 7.0967 7.2177 -3.9577 40 1 4.9000 8.4874 -3.9553 41 1 4.1760 7.2339 -2.8126 42 1 2.4117 4.1832 -5.1856 43 1 3.1347 5.4371 -6.3288 44 1 5.3318 4.1683 -6.3309 45 1 4.6097 2.9145 -5.1876 46 1 0.7589 -2.5302 0.8896 47 1 0.7584 -2.5299 -0.8904 48 1 1.4316 -8.4326 -0.0023 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001743520203.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:49 Heat of formation + Delta-G solvation = -43.447265 kcal Electronic energy + Delta-G solvation = -26408.005989 eV Core-core repulsion = 22590.079492 eV Total energy + Delta-G solvation = -3817.926497 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55866 -40.89504 -38.39029 -37.34942 -36.72409 -35.58793 -34.67477 -32.99509 -30.68056 -28.06434 -27.85973 -26.62032 -25.35345 -23.65263 -23.36177 -22.92456 -22.56572 -20.82484 -20.40376 -19.55830 -18.16539 -17.79844 -17.55173 -17.15040 -16.93412 -16.76765 -16.58767 -16.27613 -15.82172 -15.47788 -15.30853 -14.93495 -14.70289 -14.62808 -14.34454 -14.12981 -13.63338 -13.52221 -13.39759 -13.34459 -13.27461 -13.01915 -13.00189 -12.72918 -12.61434 -12.59455 -12.37817 -12.16843 -11.88874 -11.80146 -11.76527 -11.17707 -11.12131 -10.95153 -10.60955 -10.52573 -10.40405 -10.13264 -9.74770 -9.00762 -8.51987 -6.22892 0.97856 1.30720 1.41646 1.45360 1.51127 1.54191 1.97660 2.21559 2.24831 2.64735 2.68644 2.86298 3.25157 3.43108 3.51426 3.57694 3.82882 3.93063 3.96451 3.97419 4.11898 4.17884 4.21838 4.32283 4.34058 4.35031 4.42123 4.46596 4.54498 4.68027 4.70668 4.75864 4.83429 4.85161 4.96282 4.97803 5.02459 5.02736 5.10920 5.15124 5.29249 5.40464 5.43414 5.54811 5.70372 6.10925 6.22663 6.46275 6.93398 7.08747 7.18377 8.60191 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018879 B = 0.001858 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.780769 B =15065.559314 C =15629.814077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.608 5.608 3 C 0.118 3.882 4 C -0.132 4.132 5 C 0.130 3.870 6 N -0.721 5.721 7 C 0.540 3.460 8 O -0.567 6.567 9 C -0.151 4.151 10 C -0.105 4.105 11 C -0.181 4.181 12 C -0.173 4.173 13 C -0.136 4.136 14 C -0.148 4.148 15 C 0.530 3.470 16 O -0.561 6.561 17 C -0.106 4.106 18 S -0.180 6.180 19 C -0.527 4.527 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.264 1.264 25 H -0.259 1.259 26 H -0.238 1.238 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.410 0.590 37 H 0.133 0.867 38 H 0.079 0.921 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.103 0.897 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 29.801 -11.387 31.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C -0.005 4.005 4 C -0.171 4.171 5 C 0.006 3.994 6 N -0.373 5.373 7 C 0.329 3.671 8 O -0.447 6.447 9 C -0.155 4.155 10 C -0.123 4.123 11 C -0.218 4.218 12 C -0.210 4.210 13 C -0.173 4.173 14 C -0.185 4.185 15 C 0.317 3.683 16 O -0.440 6.440 17 C -0.257 4.257 18 S 0.046 5.954 19 C -0.675 4.675 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.553 5.553 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.161 1.161 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.247 0.753 37 H 0.151 0.849 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.122 0.878 46 H 0.129 0.871 47 H 0.130 0.870 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.009 30.088 -10.699 31.997 hybrid contribution -0.962 -1.119 0.096 1.479 sum 1.047 28.969 -10.603 30.866 Atomic orbital electron populations 1.22150 0.76706 1.04909 1.03558 1.47814 1.08561 1.04601 1.73176 1.21457 0.98009 0.84459 0.96569 1.21998 1.01479 0.95460 0.98181 1.21146 0.99719 0.95767 0.82798 1.45913 1.58155 1.23850 1.09403 1.19960 0.76602 0.80294 0.90292 1.90645 1.52072 1.54698 1.47289 1.20991 1.07617 0.98389 0.88466 1.21544 1.01448 0.92889 0.96454 1.22988 0.93115 1.03960 1.01749 1.22990 1.00065 0.96431 1.01528 1.23269 0.92500 1.02775 0.98752 1.23255 1.00517 0.95618 0.99105 1.20056 0.87274 0.85448 0.75478 1.90685 1.15389 1.87455 1.50455 1.23289 1.01708 0.93590 1.07067 1.84745 1.13950 0.99094 1.97569 1.22439 0.94381 0.92440 1.58226 0.91851 1.25539 1.02614 0.94812 0.92937 1.70015 1.36697 0.99511 1.49117 0.85885 0.80371 0.80070 0.80160 1.18833 1.18312 1.16146 0.90877 0.90948 0.87820 0.91835 0.86716 0.88782 0.92805 0.90534 0.93136 0.75289 0.84941 0.90291 0.88129 0.87921 0.89863 0.87111 0.85842 0.86157 0.87839 0.87094 0.86979 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.96 10.28 127.77 1.31 2.28 16 2 N -0.61 -13.56 2.87 -846.76 -2.43 -15.99 16 3 C 0.12 2.15 5.45 86.38 0.47 2.62 16 4 C -0.13 -2.08 5.65 30.59 0.17 -1.91 16 5 C 0.13 2.17 5.67 86.38 0.49 2.66 16 6 N -0.72 -11.20 5.36 -463.05 -2.48 -13.68 16 7 C 0.54 10.69 7.24 87.66 0.63 11.32 16 8 O -0.57 -15.38 11.83 -3.02 -0.04 -15.42 16 9 C -0.15 -2.12 2.46 -52.93 -0.13 -2.25 16 10 C -0.11 -1.54 5.84 -10.80 -0.06 -1.61 16 11 C -0.18 -3.39 9.66 30.62 0.30 -3.10 16 12 C -0.17 -3.07 9.66 30.62 0.30 -2.78 16 13 C -0.14 -1.03 9.60 30.62 0.29 -0.73 16 14 C -0.15 -1.34 9.60 30.62 0.29 -1.05 16 15 C 0.53 17.80 7.69 87.65 0.67 18.48 16 16 O -0.56 -23.58 15.44 -3.03 -0.05 -23.62 16 17 C -0.11 -3.90 4.71 71.23 0.34 -3.56 16 18 S -0.18 -9.03 18.55 -56.49 -1.05 -10.07 16 19 C -0.53 -30.35 10.04 67.95 0.68 -29.67 16 20 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 21 C 0.05 2.71 5.50 84.85 0.47 3.17 16 22 N -0.92 -55.20 13.97 21.65 0.30 -54.90 16 23 Si 0.91 44.78 27.74 68.60 1.90 46.69 16 24 H -0.26 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 27 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.07 1.14 6.44 -2.39 -0.02 1.12 16 29 H 0.10 0.83 7.89 -2.39 -0.02 0.81 16 30 H 0.06 1.51 7.42 -2.39 -0.02 1.49 16 31 H 0.11 1.29 7.89 -2.39 -0.02 1.27 16 32 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.41 4.42 6.66 -92.71 -0.62 3.81 16 37 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.95 6.28 -2.38 -0.01 1.94 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.90 6.28 -2.38 -0.01 1.88 16 42 H 0.11 0.63 7.55 -2.39 -0.02 0.61 16 43 H 0.12 0.59 8.14 -2.38 -0.02 0.57 16 44 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.10 0.92 7.55 -2.39 -0.02 0.91 16 46 H 0.11 3.77 7.40 -2.40 -0.02 3.76 16 47 H 0.11 3.78 8.11 -2.39 -0.02 3.76 16 48 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -79.33 403.01 2.69 -76.64 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.30 Total: 16.48 kcal Atomic # 6 Polarization: -12.35 SS G_CDS: 6.23 Total: -6.12 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -4.61 Total: -84.56 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.08 Total: -39.04 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.69 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.07 kcal Total: -79.33 2.69 -76.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001743520203.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.193 kcal (2) G-P(sol) polarization free energy of solvation -79.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds