Wall clock time and date at job start Sat Apr 11 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47355 * 2 1 4 4 C 1.53003 * 109.47268 * 240.00153 * 2 1 3 5 5 N 1.46493 * 109.47456 * 185.00088 * 4 2 1 6 6 C 1.34779 * 120.00351 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99425 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00195 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.47124 * 179.97438 * 8 6 5 10 10 C 1.76197 * 99.99985 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00196 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00170 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99623 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00164 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46883 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47098 * 119.99976 * 14 12 10 17 17 H 1.48495 * 109.47051 * 240.00327 * 14 12 10 18 18 N 1.46497 * 109.47222 * 120.00155 * 2 1 3 19 19 C 1.34774 * 120.00197 * 275.00245 * 18 2 1 20 20 O 1.21284 * 119.99976 * 359.97438 * 19 18 2 21 21 C 1.50700 * 120.00306 * 179.97438 * 19 18 2 22 22 C 1.53003 * 112.85149 * 174.53727 * 21 19 18 23 23 C 1.52997 * 117.49445 * 134.72538 * 22 21 19 24 24 C 1.52999 * 117.49562 * 66.10334 * 22 21 19 25 25 C 1.53784 * 113.60927 * 43.23370 * 21 19 18 26 26 C 1.53784 * 87.07890 * 220.01761 * 25 21 19 27 27 C 1.53778 * 87.08154 * 25.43591 * 26 25 21 28 28 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46917 * 299.99988 * 1 2 3 30 30 H 1.09000 * 109.47085 * 59.99735 * 1 2 3 31 31 H 1.09000 * 109.46766 * 64.99865 * 4 2 1 32 32 H 1.09000 * 109.47085 * 305.00263 * 4 2 1 33 33 H 0.97006 * 119.99672 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.47234 * 300.00008 * 8 6 5 35 35 H 1.09010 * 109.46904 * 59.99799 * 8 6 5 36 36 H 0.97002 * 119.99789 * 179.97438 * 13 12 10 37 37 H 0.97001 * 120.00103 * 94.99663 * 18 2 1 38 38 H 1.08994 * 115.55017 * 280.44084 * 22 21 19 39 39 H 1.08994 * 117.50351 * 0.02562 * 23 22 21 40 40 H 1.09003 * 117.49527 * 145.02679 * 23 22 21 41 41 H 1.08998 * 117.49764 * 214.97599 * 24 22 21 42 42 H 1.08996 * 117.49919 * 0.02562 * 24 22 21 43 43 H 1.08992 * 113.61940 * 334.56649 * 25 21 19 44 44 H 1.09002 * 113.61040 * 105.47563 * 25 21 19 45 45 H 1.09003 * 113.61420 * 270.88522 * 26 25 21 46 46 H 1.09002 * 113.61539 * 139.98110 * 26 25 21 47 47 H 1.09007 * 113.61805 * 220.02463 * 27 26 25 48 48 H 1.08999 * 113.61647 * 89.11500 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1731 -1.4283 -2.1913 7 8 3.5700 -1.8832 -3.1400 8 6 5.6751 -1.5359 -2.1312 9 16 6.2784 -2.3892 -3.6090 10 6 8.0101 -2.3764 -3.2842 11 1 8.3864 -1.9239 -2.3785 12 6 8.8907 -2.9488 -4.1916 13 7 8.4321 -3.5008 -5.2950 14 14 10.7266 -2.9358 -3.8469 15 1 10.9818 -2.2606 -2.5491 16 1 11.2285 -4.3321 -3.7849 17 1 11.4289 -2.2050 -4.9321 18 7 2.0184 -0.6906 1.1961 19 6 2.1471 -0.0184 2.3571 20 8 1.8590 1.1585 2.4115 21 6 2.6489 -0.7289 3.5877 22 6 2.8577 0.2138 4.7745 23 6 2.3351 -0.2412 6.1386 24 6 1.6171 0.8754 5.3779 25 6 3.8448 -1.6574 3.3182 26 6 3.1911 -2.6523 4.2917 27 6 1.8472 -1.9934 3.9389 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1582 -2.1369 32 1 1.6054 -1.7198 -1.2952 33 1 3.9824 -0.4628 -0.4316 34 1 6.1094 -0.5372 -2.0851 35 1 5.9637 -2.0990 -1.2435 36 1 9.0475 -3.9005 -5.9294 37 1 2.2490 -1.6318 1.1526 38 1 3.7796 0.7950 4.7567 39 1 1.8429 -1.2123 6.1906 40 1 2.9134 0.0405 7.0186 41 1 1.7230 1.8917 5.7575 42 1 0.6522 0.6387 4.9297 43 1 3.8938 -2.0195 2.2913 44 1 4.7953 -1.2593 3.6736 45 1 3.4894 -2.5071 5.3300 46 1 3.2658 -3.6910 3.9700 47 1 1.1849 -1.8664 4.7954 48 1 1.3500 -2.4473 3.0817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001744629371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:58 Heat of formation + Delta-G solvation = -32.243756 kcal Electronic energy + Delta-G solvation = -27405.543512 eV Core-core repulsion = 23588.102836 eV Total energy + Delta-G solvation = -3817.440676 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.37799 -39.45941 -38.56118 -36.47351 -35.76675 -33.61154 -32.44991 -31.36924 -29.42137 -27.51570 -26.24753 -25.99360 -25.39316 -22.89775 -22.50960 -21.70794 -20.99040 -20.37969 -18.93002 -17.99563 -17.52234 -16.87876 -16.37641 -16.27280 -15.89240 -15.58080 -15.08594 -14.91732 -14.82392 -14.46658 -14.07548 -13.88420 -13.48916 -13.18092 -12.97781 -12.94529 -12.91721 -12.62965 -12.43097 -12.28021 -12.20677 -11.87345 -11.75605 -11.74744 -11.31457 -11.12839 -11.08738 -11.04143 -10.79637 -10.77349 -10.64593 -10.33772 -9.83247 -9.65033 -9.51154 -9.37184 -9.10247 -8.98126 -8.26191 -6.52674 -6.24011 -3.94648 2.33386 2.72769 2.99430 3.04395 3.20100 3.26723 3.31164 3.54896 3.67961 4.06016 4.12493 4.15260 4.18187 4.34352 4.36236 4.54373 4.64652 4.80347 4.82726 4.93094 4.98995 5.11179 5.11421 5.18337 5.21581 5.24780 5.32217 5.37799 5.41419 5.50620 5.52463 5.57344 5.60912 5.65673 5.68355 5.74615 5.83331 5.84859 5.86404 5.89676 5.96530 6.10292 6.18976 6.51422 7.21001 7.57748 7.62007 7.98577 8.33306 8.54144 9.21634 10.83456 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.002443 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.609434 B =11460.876242 C =12885.773147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.095 0.905 4 C 0.113 3.887 5 N -0.740 5.740 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 N -0.727 5.727 19 C 0.530 3.470 20 O -0.531 6.531 21 C -0.073 4.073 22 C -0.115 4.115 23 C -0.185 4.185 24 C -0.158 4.158 25 C -0.125 4.125 26 C -0.136 4.136 27 C -0.131 4.131 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.399 0.601 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.401 0.599 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.294 5.038 22.593 27.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.113 0.887 4 C -0.012 4.012 5 N -0.395 5.395 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 N -0.381 5.381 19 C 0.316 3.684 20 O -0.406 6.406 21 C -0.076 4.076 22 C -0.133 4.133 23 C -0.222 4.222 24 C -0.195 4.195 25 C -0.163 4.163 26 C -0.174 4.174 27 C -0.169 4.169 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.233 0.767 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.237 0.763 38 H 0.127 0.873 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.106 0.894 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.484 5.048 20.848 27.053 hybrid contribution 2.219 0.315 1.541 2.720 sum -14.265 5.363 22.389 27.084 Atomic orbital electron populations 1.22096 0.94110 1.02603 1.03043 1.21235 0.94897 0.97862 0.83296 0.88668 1.21612 0.81161 1.01277 0.97108 1.46001 1.06784 1.62077 1.24629 1.20326 0.89532 0.76732 0.81599 1.90710 1.69856 1.45982 1.32440 1.23530 0.93481 1.05715 1.07682 1.85398 1.04680 1.72982 1.20264 1.22900 0.91489 1.44227 1.09677 0.90887 1.24997 0.99616 0.94542 0.94461 1.70026 1.35323 1.35514 1.09405 0.86115 0.82960 0.77991 0.78423 1.19606 1.20561 1.20554 1.46135 1.68019 1.14348 1.09572 1.20339 0.77075 0.86983 0.84002 1.90694 1.49189 1.15861 1.84848 1.21559 0.99074 0.94079 0.92930 1.21521 0.99324 1.01093 0.91371 1.23217 1.04470 0.99888 0.94626 1.22781 0.96457 0.97419 1.02809 1.22993 0.97056 0.95750 1.00516 1.22852 0.95328 0.98959 1.00218 1.23114 0.97245 0.94135 1.02383 0.92078 0.91653 0.91096 0.89974 0.90967 0.76742 0.89236 0.89268 0.92224 0.76345 0.87323 0.88153 0.88740 0.88813 0.89026 0.89421 0.90185 0.89409 0.90753 0.90160 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.16 0.35 -0.88 16 2 C 0.13 1.15 2.73 -67.93 -0.19 0.96 16 3 H 0.10 0.97 7.58 -51.93 -0.39 0.58 16 4 C 0.11 1.18 5.23 -4.04 -0.02 1.16 16 5 N -0.74 -9.20 5.39 -60.30 -0.32 -9.52 16 6 C 0.53 9.48 7.85 -10.99 -0.09 9.39 16 7 O -0.52 -11.28 15.86 5.56 0.09 -11.19 16 8 C -0.15 -3.01 6.16 36.00 0.22 -2.79 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.53 -15.06 9.50 30.94 0.29 -14.76 16 11 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 13 N -0.87 -25.95 13.22 55.49 0.73 -25.21 16 14 Si 0.92 21.23 29.55 -169.99 -5.02 16.21 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 N -0.73 -5.84 4.14 -53.80 -0.22 -6.06 16 19 C 0.53 5.14 6.98 -10.99 -0.08 5.06 16 20 O -0.53 -7.00 15.41 5.55 0.09 -6.92 16 21 C -0.07 -0.55 1.06 -154.84 -0.16 -0.72 16 22 C -0.11 -0.91 4.84 -90.62 -0.44 -1.35 16 23 C -0.19 -1.17 8.84 -26.73 -0.24 -1.40 16 24 C -0.16 -1.26 9.47 -26.73 -0.25 -1.52 16 25 C -0.13 -0.84 7.08 -25.92 -0.18 -1.02 16 26 C -0.14 -0.76 7.58 -25.92 -0.20 -0.96 16 27 C -0.13 -0.78 6.62 -25.92 -0.17 -0.95 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.40 4.19 8.14 -40.82 -0.33 3.86 16 34 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 35 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.40 2.73 6.93 -40.82 -0.28 2.45 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.10 0.55 5.48 -51.93 -0.28 0.27 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.09 0.57 6.89 -51.93 -0.36 0.21 16 44 H 0.08 0.55 8.10 -51.93 -0.42 0.13 16 45 H 0.09 0.46 7.23 -51.93 -0.38 0.09 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.46 5.84 -51.93 -0.30 0.15 16 48 H 0.09 0.48 7.57 -51.93 -0.39 0.08 16 LS Contribution 401.98 15.07 6.06 6.06 Total: -1.00 -34.87 401.98 -9.82 -44.69 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.76 Total: 3.56 kcal Atomic # 6 Polarization: -6.57 SS G_CDS: -1.24 Total: -7.81 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.19 Total: -40.80 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: 0.17 Total: -18.10 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.87 -9.82 -44.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744629371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.446 kcal (2) G-P(sol) polarization free energy of solvation -34.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds