Wall clock time and date at job start Sat Apr 11 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47355 * 2 1 4 4 C 1.53003 * 109.47268 * 240.00153 * 2 1 3 5 5 N 1.46493 * 109.47456 * 185.00088 * 4 2 1 6 6 C 1.34779 * 120.00351 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99425 * 359.97438 * 6 5 4 8 8 C 1.50698 * 120.00195 * 179.97438 * 6 5 4 9 9 S 1.80998 * 109.47124 * 179.97438 * 8 6 5 10 10 C 1.76197 * 99.99985 * 180.02562 * 9 8 6 11 11 H 1.08005 * 120.00196 * 0.02562 * 10 9 8 12 12 C 1.38799 * 120.00170 * 179.97438 * 10 9 8 13 13 N 1.31627 * 119.99623 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00164 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.46883 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47098 * 119.99976 * 14 12 10 17 17 H 1.48495 * 109.47051 * 240.00327 * 14 12 10 18 18 N 1.46497 * 109.47222 * 120.00155 * 2 1 3 19 19 C 1.34774 * 120.00197 * 275.00245 * 18 2 1 20 20 O 1.21284 * 119.99976 * 359.97438 * 19 18 2 21 21 C 1.50700 * 120.00306 * 179.97438 * 19 18 2 22 22 C 1.53003 * 112.85149 * 174.53727 * 21 19 18 23 23 C 1.52997 * 117.49445 * 134.72538 * 22 21 19 24 24 C 1.52999 * 117.49562 * 66.10334 * 22 21 19 25 25 C 1.53784 * 113.60927 * 43.23370 * 21 19 18 26 26 C 1.53784 * 87.07890 * 220.01761 * 25 21 19 27 27 C 1.53778 * 87.08154 * 25.43591 * 26 25 21 28 28 H 1.09001 * 109.46897 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.46917 * 299.99988 * 1 2 3 30 30 H 1.09000 * 109.47085 * 59.99735 * 1 2 3 31 31 H 1.09000 * 109.46766 * 64.99865 * 4 2 1 32 32 H 1.09000 * 109.47085 * 305.00263 * 4 2 1 33 33 H 0.97006 * 119.99672 * 0.02562 * 5 4 2 34 34 H 1.09000 * 109.47234 * 300.00008 * 8 6 5 35 35 H 1.09010 * 109.46904 * 59.99799 * 8 6 5 36 36 H 0.97002 * 119.99789 * 179.97438 * 13 12 10 37 37 H 0.97001 * 120.00103 * 94.99663 * 18 2 1 38 38 H 1.08994 * 115.55017 * 280.44084 * 22 21 19 39 39 H 1.08994 * 117.50351 * 0.02562 * 23 22 21 40 40 H 1.09003 * 117.49527 * 145.02679 * 23 22 21 41 41 H 1.08998 * 117.49764 * 214.97599 * 24 22 21 42 42 H 1.08996 * 117.49919 * 0.02562 * 24 22 21 43 43 H 1.08992 * 113.61940 * 334.56649 * 25 21 19 44 44 H 1.09002 * 113.61040 * 105.47563 * 25 21 19 45 45 H 1.09003 * 113.61420 * 270.88522 * 26 25 21 46 46 H 1.09002 * 113.61539 * 139.98110 * 26 25 21 47 47 H 1.09007 * 113.61805 * 220.02463 * 27 26 25 48 48 H 1.08999 * 113.61647 * 89.11500 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 3.5000 -0.8264 -1.1906 6 6 4.1731 -1.4283 -2.1913 7 8 3.5700 -1.8832 -3.1400 8 6 5.6751 -1.5359 -2.1312 9 16 6.2784 -2.3892 -3.6090 10 6 8.0101 -2.3764 -3.2842 11 1 8.3864 -1.9239 -2.3785 12 6 8.8907 -2.9488 -4.1916 13 7 8.4321 -3.5008 -5.2950 14 14 10.7266 -2.9358 -3.8469 15 1 10.9818 -2.2606 -2.5491 16 1 11.2285 -4.3321 -3.7849 17 1 11.4289 -2.2050 -4.9321 18 7 2.0184 -0.6906 1.1961 19 6 2.1471 -0.0184 2.3571 20 8 1.8590 1.1585 2.4115 21 6 2.6489 -0.7289 3.5877 22 6 2.8577 0.2138 4.7745 23 6 2.3351 -0.2412 6.1386 24 6 1.6171 0.8754 5.3779 25 6 3.8448 -1.6574 3.3182 26 6 3.1911 -2.6523 4.2917 27 6 1.8472 -1.9934 3.9389 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.7517 -0.1582 -2.1369 32 1 1.6054 -1.7198 -1.2952 33 1 3.9824 -0.4628 -0.4316 34 1 6.1094 -0.5372 -2.0851 35 1 5.9637 -2.0990 -1.2435 36 1 9.0475 -3.9005 -5.9294 37 1 2.2490 -1.6318 1.1526 38 1 3.7796 0.7950 4.7567 39 1 1.8429 -1.2123 6.1906 40 1 2.9134 0.0405 7.0186 41 1 1.7230 1.8917 5.7575 42 1 0.6522 0.6387 4.9297 43 1 3.8938 -2.0195 2.2913 44 1 4.7953 -1.2593 3.6736 45 1 3.4894 -2.5071 5.3300 46 1 3.2658 -3.6910 3.9700 47 1 1.1849 -1.8664 4.7954 48 1 1.3500 -2.4473 3.0817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001744629371.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:57 Heat of formation + Delta-G solvation = -55.170412 kcal Electronic energy + Delta-G solvation = -27406.537687 eV Core-core repulsion = 23588.102836 eV Total energy + Delta-G solvation = -3818.434851 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -42.02485 -40.69629 -39.41486 -37.40441 -36.37434 -34.74317 -34.57269 -32.24939 -30.80488 -28.08679 -27.73884 -26.86692 -26.66290 -23.58739 -23.09657 -22.28130 -21.79885 -21.69955 -19.91113 -19.49392 -18.35799 -17.74614 -17.62171 -17.20043 -16.88132 -16.85396 -16.36595 -16.21133 -15.87181 -15.61204 -15.22664 -14.85598 -14.55130 -14.43803 -14.19618 -13.87035 -13.73591 -13.42923 -13.27067 -13.15462 -13.07956 -13.00265 -12.91084 -12.80778 -12.58969 -12.33199 -12.27121 -12.08575 -11.70658 -11.65123 -11.35587 -11.20981 -11.15580 -11.00026 -10.90488 -10.36683 -10.26963 -10.19513 -10.13948 -8.65754 -8.34609 -6.12034 1.27023 1.41558 1.47087 1.57787 1.58986 1.60438 2.02477 2.25647 2.29623 2.96821 2.99828 3.31997 3.49597 3.54224 3.59586 3.61383 3.88148 3.92003 3.95388 4.04317 4.10158 4.21975 4.26358 4.29564 4.40845 4.51104 4.56314 4.68051 4.68897 4.73092 4.73989 4.75868 4.88151 4.96450 5.00491 5.08036 5.13433 5.17294 5.20822 5.26962 5.31794 5.36600 5.42800 5.46802 5.48970 6.20448 6.41794 6.51528 7.07252 7.19470 7.25314 8.74713 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013364 B = 0.002443 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.609434 B =11460.876242 C =12885.773147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.142 3.858 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.713 5.713 6 C 0.537 3.463 7 O -0.561 6.561 8 C -0.131 4.131 9 S -0.148 6.148 10 C -0.545 4.545 11 H 0.082 0.918 12 C 0.013 3.987 13 N -0.911 5.911 14 Si 0.997 3.003 15 H -0.257 1.257 16 H -0.273 1.273 17 H -0.275 1.275 18 N -0.718 5.718 19 C 0.528 3.472 20 O -0.569 6.569 21 C -0.075 4.075 22 C -0.127 4.127 23 C -0.163 4.163 24 C -0.172 4.172 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.127 4.127 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.411 0.589 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.271 0.729 37 H 0.410 0.590 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.090 0.910 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.825 4.730 24.813 29.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.037 3.963 3 H 0.101 0.899 4 C -0.008 4.008 5 N -0.368 5.368 6 C 0.323 3.677 7 O -0.439 6.439 8 C -0.282 4.282 9 S 0.080 5.920 10 C -0.692 4.692 11 H 0.100 0.900 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.819 3.181 15 H -0.181 1.181 16 H -0.199 1.199 17 H -0.201 1.201 18 N -0.371 5.371 19 C 0.316 3.684 20 O -0.448 6.448 21 C -0.078 4.078 22 C -0.146 4.146 23 C -0.199 4.199 24 C -0.209 4.209 25 C -0.165 4.165 26 C -0.166 4.166 27 C -0.164 4.164 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.248 0.752 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.247 0.753 38 H 0.117 0.883 39 H 0.131 0.869 40 H 0.123 0.877 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.030 4.744 23.116 28.527 hybrid contribution 1.962 0.490 0.915 2.220 sum -14.068 5.235 24.031 28.334 Atomic orbital electron populations 1.22044 0.92956 1.03339 1.02956 1.21081 0.95618 0.96894 0.82690 0.89912 1.21725 0.79374 1.01830 0.97857 1.45726 1.07744 1.59943 1.23350 1.19992 0.88783 0.76948 0.82003 1.90704 1.70326 1.48373 1.34454 1.23377 0.94830 1.05640 1.04389 1.85552 1.05756 1.74901 1.25835 1.23223 0.91748 1.44214 1.10051 0.90006 1.26108 1.05119 0.93863 0.94058 1.70183 1.37289 1.36614 1.10643 0.84922 0.76035 0.78305 0.78796 1.18067 1.19869 1.20083 1.46060 1.67408 1.14637 1.09008 1.20767 0.76316 0.86556 0.84757 1.90679 1.51023 1.17618 1.85459 1.21596 1.00132 0.94324 0.91786 1.21559 0.98785 1.01603 0.92634 1.23273 1.03138 0.99597 0.93941 1.22754 0.96167 0.97981 1.03973 1.23039 0.96563 0.95769 1.01090 1.22825 0.94513 0.98986 1.00230 1.23139 0.97503 0.92936 1.02825 0.90921 0.92703 0.90228 0.90264 0.90350 0.75223 0.87698 0.87012 0.92009 0.75312 0.88273 0.86946 0.87700 0.89234 0.89977 0.89108 0.90467 0.88862 0.90009 0.89720 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.48 71.98 0.68 -1.47 16 2 C 0.14 2.27 2.73 44.99 0.12 2.40 16 3 H 0.08 1.61 7.58 -2.39 -0.02 1.59 16 4 C 0.12 2.23 5.23 86.38 0.45 2.68 16 5 N -0.71 -16.44 5.39 -463.07 -2.49 -18.93 16 6 C 0.54 18.58 7.85 87.66 0.69 19.27 16 7 O -0.56 -24.56 15.86 -3.02 -0.05 -24.60 16 8 C -0.13 -5.00 6.16 71.24 0.44 -4.56 16 9 S -0.15 -8.01 20.57 -56.49 -1.16 -9.18 16 10 C -0.54 -30.61 9.50 67.95 0.65 -29.96 16 11 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 12 C 0.01 0.75 5.49 84.86 0.47 1.21 16 13 N -0.91 -55.34 13.22 21.65 0.29 -55.05 16 14 Si 1.00 43.12 29.55 68.60 2.03 45.15 16 15 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 18 N -0.72 -10.34 4.14 -442.53 -1.83 -12.17 16 19 C 0.53 9.72 6.98 87.66 0.61 10.33 16 20 O -0.57 -14.95 15.41 -3.04 -0.05 -15.00 16 21 C -0.08 -1.03 1.06 -52.40 -0.06 -1.09 16 22 C -0.13 -1.91 4.84 -10.79 -0.05 -1.96 16 23 C -0.16 -1.76 8.84 30.59 0.27 -1.49 16 24 C -0.17 -2.68 9.47 30.59 0.29 -2.39 16 25 C -0.13 -1.44 7.08 31.12 0.22 -1.22 16 26 C -0.13 -1.10 7.58 31.12 0.24 -0.87 16 27 C -0.13 -1.22 6.62 31.12 0.21 -1.02 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.41 7.66 8.14 -92.70 -0.75 6.91 16 34 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 35 H 0.11 3.75 8.14 -2.39 -0.02 3.73 16 36 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 37 H 0.41 4.63 6.93 -92.71 -0.64 3.98 16 38 H 0.10 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.11 0.95 5.48 -2.39 -0.01 0.94 16 40 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.09 0.95 6.89 -2.39 -0.02 0.94 16 44 H 0.08 0.93 8.10 -2.39 -0.02 0.91 16 45 H 0.09 0.72 7.23 -2.39 -0.02 0.70 16 46 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.08 0.76 5.84 -2.38 -0.01 0.75 16 48 H 0.09 0.79 7.57 -2.39 -0.02 0.77 16 Total: -1.00 -77.37 401.98 1.53 -75.84 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: -0.42 Total: 24.08 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 5.22 Total: -10.13 kcal Atomic # 7 Polarization: -82.12 SS G_CDS: -4.04 Total: -86.16 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.09 Total: -39.60 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.18 kcal Total: -77.37 1.53 -75.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001744629371.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.667 kcal (2) G-P(sol) polarization free energy of solvation -77.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds