Wall clock time and date at job start Sat Apr 11 2020 06:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.46493 * 119.99899 * 270.00188 * 3 2 1 5 5 C 1.52997 * 109.47377 * 90.00269 * 4 3 2 6 6 N 1.46497 * 109.47148 * 179.97438 * 5 4 3 7 7 C 1.34783 * 119.99918 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99816 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99862 * 180.02562 * 7 6 5 10 10 H 1.08996 * 109.64088 * 59.58072 * 9 7 6 11 11 C 1.53028 * 109.64082 * 298.94422 * 9 7 6 12 12 C 1.50059 * 110.14652 * 190.87892 * 11 9 7 13 13 C 1.29448 * 124.07684 * 17.13203 * 12 11 9 14 14 C 1.50071 * 124.07329 * 359.53426 * 13 12 11 15 15 C 1.53026 * 110.14784 * 17.12447 * 14 13 12 16 16 C 1.34773 * 119.99455 * 90.00023 * 3 2 1 17 17 O 1.21287 * 119.99667 * 179.97438 * 16 3 2 18 18 C 1.50702 * 120.00755 * 0.02562 * 16 3 2 19 19 S 1.80996 * 109.47335 * 180.02562 * 18 16 3 20 20 C 1.76203 * 99.99911 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99861 * 359.97438 * 20 19 18 22 22 C 1.38800 * 119.99867 * 180.02562 * 20 19 18 23 23 N 1.31633 * 119.99659 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00108 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47201 * 90.00441 * 24 22 20 26 26 H 1.48502 * 109.47113 * 210.00576 * 24 22 20 27 27 H 1.48502 * 109.47075 * 330.00112 * 24 22 20 28 28 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 29 29 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 32 32 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 33 33 H 1.09006 * 109.46911 * 209.99921 * 4 3 2 34 34 H 1.08996 * 109.47170 * 329.99434 * 4 3 2 35 35 H 1.09006 * 109.46817 * 299.99710 * 5 4 3 36 36 H 1.08996 * 109.47652 * 59.99460 * 5 4 3 37 37 H 0.97006 * 120.00132 * 0.02562 * 6 5 4 38 38 H 1.08995 * 109.36176 * 311.09130 * 11 9 7 39 39 H 1.09006 * 109.35168 * 70.67269 * 11 9 7 40 40 H 1.07997 * 117.96495 * 197.10995 * 12 11 9 41 41 H 1.07997 * 117.96746 * 179.50686 * 13 12 11 42 42 H 1.08997 * 109.35868 * 256.92118 * 14 13 12 43 43 H 1.09000 * 109.24819 * 137.26637 * 14 13 12 44 44 H 1.08997 * 109.64628 * 190.87832 * 15 14 13 45 45 H 1.09004 * 109.63769 * 70.25129 * 15 14 13 46 46 H 1.09004 * 109.46469 * 300.00239 * 18 16 3 47 47 H 1.09002 * 109.46873 * 59.99721 * 18 16 3 48 48 H 0.97005 * 119.99597 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 0.9875 2.7931 -1.7103 6 7 1.2319 3.4842 -2.9787 7 6 0.2436 4.1907 -3.5625 8 8 -0.8477 4.2547 -3.0375 9 6 0.4949 4.9012 -4.8677 10 1 0.7907 4.1778 -5.6275 11 6 1.6020 5.9412 -4.6824 12 6 1.6813 6.8319 -5.8874 13 6 0.7421 6.9414 -6.7714 14 6 -0.5532 6.1854 -6.7201 15 6 -0.7813 5.6254 -5.3143 16 6 2.2429 2.0165 1.1672 17 8 2.6477 3.1598 1.1673 18 6 1.9923 1.3059 2.4724 19 16 2.3836 2.4151 3.8481 20 6 2.0103 1.3590 5.2083 21 1 1.6552 0.3546 5.0305 22 6 2.1715 1.8183 6.5081 23 7 1.8930 1.0291 7.5242 24 14 2.7848 3.5557 6.8155 25 1 1.6272 4.4823 6.8961 26 1 3.5403 3.5951 8.0934 27 1 3.6747 3.9708 5.7015 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.0644 2.7985 -1.1383 34 1 2.5506 1.3452 -2.0283 35 1 0.1856 2.0665 -1.8407 36 1 0.6994 3.5198 -0.9507 37 1 2.1048 3.4327 -3.3988 38 1 1.3870 6.5446 -3.8005 39 1 2.5563 5.4324 -4.5456 40 1 2.5776 7.4184 -6.0255 41 1 0.9003 7.6194 -7.5971 42 1 -0.5205 5.3635 -7.4353 43 1 -1.3718 6.8570 -6.9788 44 1 -1.6147 4.9231 -5.3304 45 1 -0.9995 6.4418 -4.6258 46 1 0.9444 1.0114 2.5302 47 1 2.6229 0.4186 2.5299 48 1 2.0061 1.3500 8.4326 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745281345.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:06 Heat of formation + Delta-G solvation = -72.381296 kcal Electronic energy + Delta-G solvation = -26805.825322 eV Core-core repulsion = 22986.644151 eV Total energy + Delta-G solvation = -3819.181171 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.52401 -39.75968 -38.01292 -36.28543 -34.96077 -32.44415 -32.09930 -31.31169 -30.93759 -29.94560 -28.01044 -25.62576 -24.50332 -23.51296 -23.42906 -22.47002 -20.67685 -19.25080 -18.34936 -17.74637 -17.67018 -16.97080 -16.45030 -16.04440 -15.79540 -15.35024 -15.20173 -14.95985 -14.52897 -14.15115 -14.03140 -13.84572 -13.78986 -13.62446 -13.45151 -13.35430 -13.10653 -12.81395 -12.67852 -12.61431 -12.38571 -11.99226 -11.90802 -11.57115 -11.39603 -11.25961 -11.18139 -11.08724 -10.99963 -10.76798 -10.60546 -9.99475 -9.86195 -9.54682 -9.41983 -9.29337 -9.00888 -8.79813 -8.50251 -6.93025 -6.29508 -4.01425 1.87257 2.40396 2.50121 2.83853 2.94567 3.27947 3.33516 3.49978 3.58666 4.17163 4.24473 4.32360 4.42851 4.49556 4.65824 4.73425 4.78713 4.82006 4.87020 4.89433 5.00713 5.08679 5.10045 5.12305 5.15756 5.17636 5.21399 5.30797 5.44298 5.52577 5.53184 5.56503 5.66773 5.70757 5.79341 5.81040 5.86384 5.92135 5.95620 6.10873 6.18282 6.22371 6.50492 6.51892 7.20862 7.33698 7.93482 7.98476 8.35552 8.40833 9.16701 10.79616 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.002091 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.871995 B =13386.835189 C =14232.769148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.105 3.895 3 N -0.616 5.616 4 C 0.109 3.891 5 C 0.100 3.900 6 N -0.727 5.727 7 C 0.517 3.483 8 O -0.535 6.535 9 C -0.106 4.106 10 H 0.099 0.901 11 C -0.083 4.083 12 C -0.154 4.154 13 C -0.156 4.156 14 C -0.093 4.093 15 C -0.101 4.101 16 C 0.533 3.467 17 O -0.514 6.514 18 C -0.121 4.121 19 S -0.144 6.144 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.856 3.144 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.400 0.600 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.517 3.004 -30.880 31.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.018 4.018 3 N -0.352 5.352 4 C -0.015 4.015 5 C -0.024 4.024 6 N -0.380 5.380 7 C 0.303 3.697 8 O -0.411 6.411 9 C -0.127 4.127 10 H 0.117 0.883 11 C -0.120 4.120 12 C -0.172 4.172 13 C -0.174 4.174 14 C -0.130 4.130 15 C -0.139 4.139 16 C 0.321 3.679 17 O -0.388 6.388 18 C -0.272 4.272 19 S 0.083 5.917 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.234 0.766 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.090 0.910 46 H 0.116 0.884 47 H 0.116 0.884 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.712 4.703 -30.262 30.633 hybrid contribution 0.154 -0.793 0.201 0.832 sum -0.558 3.910 -30.061 30.319 Atomic orbital electron populations 1.22321 0.95740 1.02524 1.02956 1.21635 0.94694 0.81901 1.03543 1.47860 1.67892 1.14408 1.05031 1.21460 0.97051 0.97231 0.85748 1.21878 0.98397 0.96772 0.85399 1.45895 1.14997 1.52669 1.24421 1.20632 0.84180 0.78494 0.86426 1.90728 1.24118 1.61356 1.64856 1.21403 0.98412 0.97883 0.95020 0.88309 1.20427 0.97735 0.96105 0.97743 1.21978 0.99219 0.99981 0.96049 1.22107 0.95612 1.00244 0.99398 1.20508 0.95834 0.99409 0.97226 1.21438 0.95990 1.00322 0.96112 1.20373 0.76326 0.86491 0.84687 1.90703 1.43885 1.17406 1.86797 1.23339 1.05489 1.03324 0.95014 1.84801 1.87683 1.21682 0.97561 1.22297 1.51691 1.01969 0.90857 0.89374 1.24711 0.93774 0.97935 0.94885 1.69941 1.46544 1.36258 0.98873 0.86738 0.80823 0.84509 0.79797 1.19201 1.19942 1.15946 0.92291 0.91330 0.91745 0.90391 0.89555 0.89208 0.90192 0.91084 0.90736 0.76640 0.90082 0.90400 0.87513 0.87832 0.90741 0.90609 0.90600 0.90971 0.88395 0.88438 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 10.24 37.16 0.38 -1.32 16 2 C 0.11 1.01 5.98 -4.04 -0.02 0.98 16 3 N -0.62 -7.69 2.47 -173.69 -0.43 -8.12 16 4 C 0.11 1.09 5.56 -4.05 -0.02 1.07 16 5 C 0.10 1.11 6.00 -4.04 -0.02 1.08 16 6 N -0.73 -6.40 5.47 -60.29 -0.33 -6.73 16 7 C 0.52 5.50 7.13 -10.98 -0.08 5.42 16 8 O -0.53 -8.12 15.91 5.56 0.09 -8.03 16 9 C -0.11 -0.79 2.58 -91.55 -0.24 -1.02 16 10 H 0.10 0.56 8.13 -51.93 -0.42 0.14 16 11 C -0.08 -0.55 5.29 -28.18 -0.15 -0.70 16 12 C -0.15 -0.97 9.80 -35.91 -0.35 -1.32 16 13 C -0.16 -0.95 9.80 -35.90 -0.35 -1.31 16 14 C -0.09 -0.56 6.12 -28.17 -0.17 -0.73 16 15 C -0.10 -0.81 4.69 -26.52 -0.12 -0.94 16 16 C 0.53 9.33 7.69 -10.99 -0.08 9.25 16 17 O -0.51 -10.81 15.44 5.55 0.09 -10.73 16 18 C -0.12 -2.33 4.71 36.01 0.17 -2.16 16 19 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 20 C -0.52 -14.93 10.04 30.94 0.31 -14.62 16 21 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.48 13.97 55.49 0.78 -25.70 16 24 Si 0.86 21.83 27.74 -169.99 -4.71 17.12 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 H 0.06 0.56 6.26 -51.93 -0.33 0.23 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.75 7.22 -51.93 -0.38 0.38 16 31 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 32 H 0.09 0.85 6.44 -51.93 -0.33 0.52 16 33 H 0.09 1.00 7.42 -51.93 -0.39 0.62 16 34 H 0.08 0.54 7.89 -51.93 -0.41 0.13 16 35 H 0.07 0.80 6.26 -51.93 -0.33 0.48 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.40 2.23 8.22 -40.82 -0.34 1.90 16 38 H 0.08 0.66 8.10 -51.93 -0.42 0.23 16 39 H 0.08 0.39 7.95 -51.93 -0.41 -0.03 16 40 H 0.11 0.57 8.06 -52.49 -0.42 0.14 16 41 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16 45 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 46 H 0.10 1.78 7.19 -51.91 -0.37 1.41 16 47 H 0.10 1.73 7.40 -51.92 -0.38 1.34 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -36.05 399.06 -9.22 -45.27 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.86 Total: 0.16 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -0.85 Total: -3.62 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.02 Total: -40.56 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.17 Total: -18.76 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.05 -9.22 -45.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745281345.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.114 kcal (2) G-P(sol) polarization free energy of solvation -36.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds