Wall clock time and date at job start Sat Apr 11 2020 06:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47049 * 2 1 4 4 C 1.46499 * 119.99660 * 269.99657 * 3 2 1 5 5 C 1.52995 * 109.47224 * 270.00005 * 4 3 2 6 6 N 1.46503 * 109.47227 * 180.02562 * 5 4 3 7 7 C 1.34775 * 120.00220 * 180.02562 * 6 5 4 8 8 O 1.21291 * 119.99867 * 359.97438 * 7 6 5 9 9 C 1.50697 * 120.00079 * 179.97438 * 7 6 5 10 10 H 1.08996 * 109.64174 * 300.41359 * 9 7 6 11 11 C 1.53023 * 109.64141 * 61.05447 * 9 7 6 12 12 C 1.50070 * 110.14786 * 169.11707 * 11 9 7 13 13 C 1.29438 * 124.07507 * 342.87526 * 12 11 9 14 14 C 1.50063 * 124.08005 * 0.45756 * 13 12 11 15 15 C 1.53023 * 110.14578 * 342.87983 * 14 13 12 16 16 C 1.34778 * 120.00061 * 90.00186 * 3 2 1 17 17 O 1.21278 * 119.99748 * 179.97438 * 16 3 2 18 18 C 1.50697 * 120.00209 * 359.97438 * 16 3 2 19 19 S 1.80999 * 109.47181 * 180.02562 * 18 16 3 20 20 C 1.76199 * 99.99825 * 179.97438 * 19 18 16 21 21 H 1.08002 * 120.00405 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99855 * 179.72221 * 20 19 18 23 23 N 1.31634 * 119.99756 * 0.27728 * 22 20 19 24 24 Si 1.86803 * 120.00005 * 180.27923 * 22 20 19 25 25 H 1.48498 * 109.47174 * 90.00123 * 24 22 20 26 26 H 1.48501 * 109.47062 * 210.00074 * 24 22 20 27 27 H 1.48504 * 109.46913 * 329.99873 * 24 22 20 28 28 H 1.09001 * 109.47421 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47246 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47108 * 60.00064 * 1 2 3 31 31 H 1.08996 * 109.47349 * 239.99482 * 2 1 3 32 32 H 1.09004 * 109.47108 * 119.99936 * 2 1 3 33 33 H 1.09000 * 109.47398 * 30.00420 * 4 3 2 34 34 H 1.08999 * 109.47169 * 150.00313 * 4 3 2 35 35 H 1.09001 * 109.47502 * 299.99743 * 5 4 3 36 36 H 1.09003 * 109.47416 * 60.00439 * 5 4 3 37 37 H 0.97003 * 119.99892 * 359.97438 * 6 5 4 38 38 H 1.08997 * 109.35787 * 289.32589 * 11 9 7 39 39 H 1.08999 * 109.36214 * 48.91266 * 11 9 7 40 40 H 1.08001 * 117.96256 * 162.84173 * 12 11 9 41 41 H 1.08005 * 117.96463 * 180.48996 * 13 12 11 42 42 H 1.09001 * 109.36769 * 222.66758 * 14 13 12 43 43 H 1.09006 * 109.24527 * 103.00805 * 14 13 12 44 44 H 1.09005 * 109.63999 * 289.74928 * 15 14 13 45 45 H 1.09003 * 109.64791 * 169.11966 * 15 14 13 46 46 H 1.08999 * 109.47278 * 59.99800 * 18 16 3 47 47 H 1.09002 * 109.46837 * 300.00183 * 18 16 3 48 48 H 0.97000 * 119.99219 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.7075 1.8313 -1.7104 6 7 3.9519 2.5223 -2.9789 7 6 5.1645 2.4506 -3.5626 8 8 6.0536 1.8143 -3.0376 9 6 5.4157 3.1610 -4.8677 10 1 4.7310 2.7843 -5.6276 11 6 5.2083 4.6657 -4.6825 12 6 5.7067 5.4084 -5.8876 13 6 6.5059 4.9031 -6.7716 14 6 7.0381 3.5010 -6.7202 15 6 6.8636 2.9221 -5.3145 16 6 2.2430 2.0166 1.1672 17 8 2.6477 3.1598 1.1671 18 6 1.9913 1.3064 2.4723 19 16 2.3829 2.4156 3.8480 20 6 2.0083 1.3600 5.2082 21 1 1.6533 0.3556 5.0305 22 6 2.1753 1.8173 6.5080 23 7 2.6084 3.0413 6.7246 24 14 1.7856 0.6955 7.9501 25 1 3.0025 -0.0677 8.3265 26 1 1.3367 1.5129 9.1058 27 1 0.7076 -0.2502 7.5642 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.5817 1.6876 -2.0284 34 1 2.0956 3.1409 -1.1385 35 1 4.3883 2.2155 -0.9508 36 1 3.8745 0.7621 -1.8407 37 1 3.2407 3.0309 -3.3990 38 1 4.1464 4.8700 -4.5459 39 1 5.7549 5.0000 -3.8007 40 1 5.3776 6.4276 -6.0262 41 1 6.8091 5.5298 -7.5973 42 1 8.0968 3.5064 -6.9798 43 1 6.4940 2.8837 -7.4352 44 1 7.5463 3.4200 -4.6259 45 1 7.0703 1.8520 -5.3305 46 1 2.6211 0.4187 2.5303 47 1 0.9432 1.0126 2.5299 48 1 2.7247 3.3609 7.6330 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001745281346.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:08 Heat of formation + Delta-G solvation = -97.681654 kcal Electronic energy + Delta-G solvation = -26618.278986 eV Core-core repulsion = 22798.000709 eV Total energy + Delta-G solvation = -3820.278277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.36998 -40.88796 -38.66976 -37.37698 -35.94956 -34.59535 -32.88965 -31.95563 -31.57812 -31.13805 -28.96308 -27.65960 -25.24689 -24.39367 -24.12970 -23.29766 -21.48396 -20.44476 -19.47574 -18.87903 -18.41075 -18.08083 -17.69082 -16.90521 -16.86458 -16.67913 -16.41632 -16.11488 -15.75887 -15.32180 -14.89366 -14.81824 -14.68825 -14.62690 -14.45623 -14.22133 -14.08919 -13.94305 -13.44659 -13.24500 -13.19165 -13.14487 -13.07795 -12.90345 -12.75227 -12.64003 -12.33590 -12.01912 -11.99843 -11.72807 -11.72314 -11.34529 -11.15235 -10.98008 -10.77551 -10.28217 -10.19998 -9.87419 -9.83435 -8.68587 -8.35681 -6.14104 1.22842 1.41603 1.42028 1.42943 1.51344 1.54879 1.56874 1.87035 2.26031 2.40343 2.98448 3.23907 3.54952 3.64233 3.70407 3.80871 3.87150 4.01027 4.05776 4.19508 4.21540 4.27918 4.34157 4.39597 4.41984 4.46609 4.47672 4.59115 4.61091 4.71458 4.73187 4.84146 4.91252 4.91616 5.00968 5.04088 5.05972 5.23549 5.30410 5.34540 5.38407 5.40640 5.57766 5.77421 6.06518 6.18385 6.21716 6.48223 7.05451 7.09801 7.20287 8.73560 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.001946 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.673430 B =14384.021222 C =15088.595312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.096 3.904 3 N -0.603 5.603 4 C 0.113 3.887 5 C 0.112 3.888 6 N -0.711 5.711 7 C 0.513 3.487 8 O -0.587 6.587 9 C -0.096 4.096 10 H 0.128 0.872 11 C -0.082 4.082 12 C -0.162 4.162 13 C -0.158 4.158 14 C -0.089 4.089 15 C -0.103 4.103 16 C 0.532 3.468 17 O -0.561 6.561 18 C -0.124 4.124 19 S -0.154 6.154 20 C -0.545 4.545 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.256 1.256 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.077 0.923 35 H 0.028 0.972 36 H 0.071 0.929 37 H 0.419 0.581 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.118 0.882 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.108 0.892 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 -4.140 -30.942 31.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.025 4.025 3 N -0.337 5.337 4 C -0.010 4.010 5 C -0.014 4.014 6 N -0.364 5.364 7 C 0.300 3.700 8 O -0.467 6.467 9 C -0.117 4.117 10 H 0.146 0.854 11 C -0.120 4.120 12 C -0.180 4.180 13 C -0.176 4.176 14 C -0.126 4.126 15 C -0.141 4.141 16 C 0.320 3.680 17 O -0.438 6.438 18 C -0.275 4.275 19 S 0.073 5.927 20 C -0.693 4.693 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.180 1.180 28 H 0.107 0.893 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.146 0.854 34 H 0.095 0.905 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.256 0.744 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.122 0.878 47 H 0.127 0.873 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.413 -2.789 -30.456 30.586 hybrid contribution -0.557 -1.221 1.295 1.865 sum -0.971 -4.010 -29.161 29.451 Atomic orbital electron populations 1.22182 0.94552 1.03585 1.02220 1.21926 0.95507 0.80153 1.04933 1.47869 1.65865 1.15715 1.04276 1.21595 0.94723 0.99164 0.85537 1.21519 0.97174 0.97475 0.85215 1.45723 1.13935 1.53428 1.23342 1.21287 0.81485 0.80015 0.87175 1.90711 1.45187 1.44380 1.66433 1.21410 1.00382 0.96329 0.93600 0.85447 1.20439 1.02926 0.91269 0.97321 1.22060 0.99714 1.00481 0.95772 1.22271 0.98163 0.97348 0.99838 1.20504 1.02089 0.94119 0.95851 1.21420 0.94271 1.01240 0.97143 1.20161 0.76294 0.85926 0.85617 1.90686 1.46177 1.19519 1.87467 1.23399 1.06012 1.02999 0.95089 1.85579 1.87707 1.22019 0.97378 1.23186 1.51683 1.01803 0.92605 0.89903 1.26147 0.94160 0.97194 1.01719 1.70191 1.44207 1.17896 1.22462 0.84950 0.79002 0.77706 0.76305 1.19426 1.20238 1.18017 0.89305 0.94249 0.91132 0.87117 0.90324 0.85394 0.90483 0.95315 0.91033 0.74365 0.88299 0.92240 0.86393 0.86437 0.90042 0.89167 0.93364 0.91716 0.87764 0.87339 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 71.98 0.74 -1.75 16 2 C 0.10 1.65 5.93 86.38 0.51 2.16 16 3 N -0.60 -15.02 2.47 -821.83 -2.03 -17.05 16 4 C 0.11 2.17 5.52 86.38 0.48 2.65 16 5 C 0.11 2.52 6.00 86.38 0.52 3.04 16 6 N -0.71 -12.28 5.47 -463.05 -2.53 -14.81 16 7 C 0.51 11.20 7.13 87.66 0.62 11.82 16 8 O -0.59 -19.03 15.91 -3.06 -0.05 -19.08 16 9 C -0.10 -1.38 2.58 -11.40 -0.03 -1.41 16 10 H 0.13 1.14 8.13 -2.39 -0.02 1.12 16 11 C -0.08 -1.05 5.29 29.66 0.16 -0.90 16 12 C -0.16 -1.85 9.80 27.04 0.27 -1.59 16 13 C -0.16 -1.70 9.80 27.04 0.27 -1.44 16 14 C -0.09 -0.97 6.12 29.66 0.18 -0.79 16 15 C -0.10 -1.70 4.69 30.74 0.14 -1.56 16 16 C 0.53 19.88 7.69 87.66 0.67 20.55 16 17 O -0.56 -26.04 15.44 -3.02 -0.05 -26.09 16 18 C -0.12 -5.01 4.71 71.23 0.34 -4.68 16 19 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 20 C -0.54 -31.38 9.50 67.96 0.65 -30.74 16 21 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 22 C 0.01 0.72 5.49 84.86 0.47 1.18 16 23 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 24 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 0.79 7.22 -2.39 -0.02 0.77 16 30 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.11 1.23 8.07 -2.39 -0.02 1.21 16 32 H 0.08 1.48 6.44 -2.38 -0.02 1.46 16 33 H 0.13 1.29 8.07 -2.39 -0.02 1.27 16 34 H 0.08 1.76 7.42 -2.39 -0.02 1.74 16 35 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.42 3.98 8.22 -92.71 -0.76 3.22 16 38 H 0.10 0.83 7.95 -2.39 -0.02 0.81 16 39 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 40 H 0.12 1.08 8.06 -2.91 -0.02 1.06 16 41 H 0.12 0.95 8.06 -2.91 -0.02 0.93 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 44 H 0.05 1.01 8.12 -2.38 -0.02 0.99 16 45 H 0.06 1.20 7.91 -2.39 -0.02 1.18 16 46 H 0.10 3.88 7.40 -2.39 -0.02 3.86 16 47 H 0.11 3.97 7.18 -2.39 -0.02 3.95 16 48 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -85.35 405.78 2.65 -82.70 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.18 Total: 17.93 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 5.97 Total: -3.44 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -4.28 Total: -88.09 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.10 Total: -45.16 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -85.35 2.65 -82.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745281346.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.978 kcal (2) G-P(sol) polarization free energy of solvation -85.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds