Wall clock time and date at job start Sat Apr 11 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.47021 * 2 1 4 4 C 1.34782 * 120.00050 * 89.99767 * 3 2 1 5 5 O 1.21619 * 119.99590 * 179.97438 * 4 3 2 6 6 C 1.47094 * 119.99967 * 0.02562 * 4 3 2 7 7 C 1.32991 * 120.00065 * 173.70018 * 6 4 3 8 8 C 1.50702 * 120.00053 * 353.13807 * 7 6 4 9 9 C 1.50697 * 120.00461 * 173.13403 * 7 6 4 10 10 C 1.46501 * 119.99933 * 269.99557 * 3 2 1 11 11 H 1.08999 * 110.88676 * 357.57655 * 10 3 2 12 12 C 1.55158 * 111.00445 * 233.64967 * 10 3 2 13 13 C 1.54325 * 102.94035 * 206.42304 * 12 10 3 14 14 N 1.47019 * 107.27002 * 22.19514 * 13 12 10 15 15 C 1.34787 * 125.64349 * 181.01734 * 14 13 12 16 16 O 1.21286 * 119.99248 * 180.02562 * 15 14 13 17 17 C 1.50694 * 120.00086 * 0.04805 * 15 14 13 18 18 S 1.81003 * 109.46840 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99900 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00176 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00098 * 179.97438 * 19 18 17 22 22 N 1.31635 * 119.99690 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00199 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46677 * 90.00260 * 23 21 19 25 25 H 1.48497 * 109.47146 * 210.00337 * 23 21 19 26 26 H 1.48502 * 109.46916 * 330.00250 * 23 21 19 27 27 C 1.47418 * 108.70382 * 1.06049 * 14 13 12 28 28 H 1.09003 * 109.46818 * 60.00445 * 1 2 3 29 29 H 1.09002 * 109.47298 * 299.99913 * 1 2 3 30 30 H 1.08996 * 109.46885 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47015 * 120.00054 * 2 1 3 32 32 H 1.08996 * 109.47413 * 239.99642 * 2 1 3 33 33 H 1.07998 * 120.00273 * 353.69872 * 6 4 3 34 34 H 1.08994 * 109.47494 * 84.48305 * 8 7 6 35 35 H 1.09005 * 109.47118 * 204.49067 * 8 7 6 36 36 H 1.09006 * 109.46705 * 324.48087 * 8 7 6 37 37 H 1.09001 * 109.47017 * 0.02562 * 9 7 6 38 38 H 1.08999 * 109.47417 * 120.00177 * 9 7 6 39 39 H 1.09004 * 109.47645 * 240.00182 * 9 7 6 40 40 H 1.08991 * 110.72282 * 324.78796 * 12 10 3 41 41 H 1.09000 * 110.71914 * 88.06263 * 12 10 3 42 42 H 1.08997 * 109.88217 * 262.77658 * 13 12 10 43 43 H 1.09003 * 109.88146 * 141.61652 * 13 12 10 44 44 H 1.09001 * 109.47171 * 299.99157 * 17 15 14 45 45 H 1.08999 * 109.47413 * 59.99487 * 17 15 14 46 46 H 0.97000 * 119.99664 * 179.97438 * 22 21 19 47 47 H 1.09008 * 110.36298 * 217.03211 * 27 14 13 48 48 H 1.08998 * 110.37288 * 94.71194 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0166 1.1672 5 8 2.6487 3.1630 1.1671 6 6 1.9983 1.3230 2.4411 7 6 2.3370 1.9022 3.5894 8 6 3.1096 3.1961 3.5815 9 6 1.9483 1.2647 4.8984 10 6 2.2626 2.0717 -1.2687 11 1 2.0743 1.4098 -2.1140 12 6 3.7030 2.6461 -1.3210 13 6 3.5658 3.8350 -2.2953 14 7 2.1493 4.2283 -2.3073 15 6 1.6153 5.2185 -3.0496 16 8 0.4281 5.4566 -2.9789 17 6 2.4931 6.0294 -3.9676 18 16 1.4897 7.2710 -4.8206 19 6 2.7322 8.0499 -5.7975 20 1 3.7559 7.7103 -5.7404 21 6 2.3954 9.1000 -6.6404 22 7 1.1479 9.5143 -6.7096 23 14 3.7128 9.9262 -7.6755 24 1 3.8182 9.2354 -8.9858 25 1 3.3502 11.3496 -7.8940 26 1 5.0170 9.8504 -6.9694 27 6 1.4099 3.3609 -1.3723 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.5435 0.3434 2.4440 34 1 2.4179 4.0317 3.4755 35 1 3.6599 3.2963 4.5171 36 1 3.8100 3.1959 2.7463 37 1 1.3996 0.3430 4.7049 38 1 2.8463 1.0387 5.4733 39 1 1.3181 1.9512 5.4639 40 1 4.0173 2.9893 -0.3355 41 1 4.3997 1.9049 -1.7128 42 1 3.8750 3.5322 -3.2956 43 1 4.1790 4.6683 -1.9519 44 1 3.2680 6.5265 -3.3840 45 1 2.9574 5.3709 -4.7018 46 1 0.9126 10.2483 -7.2984 47 1 0.4212 3.1308 -1.7695 48 1 1.3257 3.8394 -0.3967 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746066373.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:16 Heat of formation + Delta-G solvation = -68.730156 kcal Electronic energy + Delta-G solvation = -27528.000913 eV Core-core repulsion = 23708.978067 eV Total energy + Delta-G solvation = -3819.022845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78371 -40.57033 -38.45107 -36.83295 -36.21595 -34.60525 -33.02420 -31.12104 -30.79433 -29.75349 -28.64316 -28.18151 -27.63183 -24.74209 -24.24555 -23.04289 -20.89716 -20.77092 -19.63881 -18.93842 -18.26540 -17.99850 -17.52900 -16.90310 -16.70216 -16.43096 -16.16810 -15.72398 -15.49736 -15.06049 -14.95589 -14.72793 -14.66663 -14.58250 -14.28920 -14.13757 -13.80600 -13.65095 -13.44913 -13.30319 -13.18706 -13.16269 -12.89954 -12.81145 -12.76273 -12.63889 -12.53740 -12.44059 -12.30821 -12.07557 -11.78558 -11.71250 -11.15710 -11.05258 -10.32498 -10.30530 -10.14343 -9.80429 -9.50483 -8.71163 -8.36219 -6.15707 0.42791 1.19002 1.41511 1.41917 1.49378 1.54442 1.82432 2.23429 2.26006 2.29614 2.97648 3.19442 3.46128 3.50588 3.66789 3.86829 3.92441 3.95541 4.12079 4.15771 4.24482 4.28375 4.28814 4.39673 4.40721 4.54025 4.57717 4.58222 4.69245 4.71917 4.75224 4.81457 4.92159 4.93238 4.94512 4.98388 5.04945 5.13863 5.21118 5.26008 5.39122 5.39784 5.57224 5.62977 5.70796 6.18167 6.32510 6.47290 7.03795 7.04525 7.25303 8.73278 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021048 B = 0.002190 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.967905 B =12784.138652 C =13184.209999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.103 3.897 3 N -0.600 5.600 4 C 0.536 3.464 5 O -0.564 6.564 6 C -0.246 4.246 7 C -0.030 4.030 8 C -0.126 4.126 9 C -0.124 4.124 10 C 0.148 3.852 11 H 0.128 0.872 12 C -0.133 4.133 13 C 0.099 3.901 14 N -0.612 5.612 15 C 0.545 3.455 16 O -0.569 6.569 17 C -0.117 4.117 18 S -0.151 6.151 19 C -0.546 4.546 20 H 0.083 0.917 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 1.002 2.998 24 H -0.265 1.265 25 H -0.277 1.277 26 H -0.258 1.258 27 C 0.098 3.902 28 H 0.042 0.958 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.059 0.941 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.102 0.898 45 H 0.111 0.889 46 H 0.272 0.728 47 H 0.059 0.941 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.242 -27.764 21.164 35.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.019 4.019 3 N -0.332 5.332 4 C 0.329 3.671 5 O -0.446 6.446 6 C -0.266 4.266 7 C -0.032 4.032 8 C -0.182 4.182 9 C -0.180 4.180 10 C 0.043 3.957 11 H 0.146 0.854 12 C -0.171 4.171 13 C -0.024 4.024 14 N -0.347 5.347 15 C 0.334 3.666 16 O -0.448 6.448 17 C -0.268 4.268 18 S 0.076 5.924 19 C -0.693 4.693 20 H 0.101 0.899 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.823 3.177 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.182 1.182 27 C -0.026 4.026 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.173 0.827 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.132 0.868 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.130 0.870 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.554 -26.691 21.152 34.506 hybrid contribution 1.346 0.868 -0.843 1.810 sum 6.900 -25.823 20.309 33.570 Atomic orbital electron populations 1.22244 0.95939 1.03334 1.01626 1.21923 0.94315 0.80143 1.05492 1.47854 1.65870 1.15266 1.04187 1.19134 0.76839 0.85857 0.85242 1.90761 1.46806 1.19254 1.87767 1.22610 1.10481 1.02932 0.90600 1.22852 0.90061 0.94344 0.95975 1.21076 0.99848 0.94755 1.02493 1.21063 1.02855 1.01233 0.92874 1.22102 0.94259 0.92031 0.87300 0.85405 1.23023 0.96849 0.96678 1.00577 1.22260 0.80385 0.98253 1.01461 1.48279 1.11158 1.33219 1.42068 1.19848 0.87533 0.79401 0.79858 1.90675 1.17865 1.68619 1.67643 1.23275 1.01889 1.00810 1.00824 1.85597 1.16044 1.38521 1.52241 1.23183 0.96000 1.21486 1.28656 0.89876 1.26184 0.98806 0.96545 0.97746 1.70195 1.19434 1.27289 1.37867 0.84907 0.77622 0.77100 0.78047 1.19036 1.20227 1.18222 1.22516 0.95868 0.91420 0.92789 0.93874 0.93207 0.89215 0.87734 0.88130 0.82731 0.92284 0.90987 0.91182 0.89855 0.89373 0.89969 0.89770 0.86836 0.89088 0.91374 0.87967 0.87040 0.91936 0.92248 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 71.98 0.74 -0.84 16 2 C 0.10 0.78 5.80 86.38 0.50 1.28 16 3 N -0.60 -9.34 2.56 -794.36 -2.03 -11.38 16 4 C 0.54 10.66 6.75 86.57 0.58 11.25 16 5 O -0.56 -15.48 9.31 -4.09 -0.04 -15.52 16 6 C -0.25 -3.39 8.74 23.43 0.20 -3.18 16 7 C -0.03 -0.41 6.11 -17.62 -0.11 -0.52 16 8 C -0.13 -2.23 8.48 71.24 0.60 -1.62 16 9 C -0.12 -0.83 10.10 71.24 0.72 -0.11 16 10 C 0.15 2.77 3.55 46.38 0.16 2.93 16 11 H 0.13 1.80 7.87 -2.39 -0.02 1.78 16 12 C -0.13 -2.42 6.28 31.78 0.20 -2.22 16 13 C 0.10 2.32 6.49 86.73 0.56 2.88 16 14 N -0.61 -20.13 3.33 -811.80 -2.70 -22.83 16 15 C 0.55 23.53 7.87 87.65 0.69 24.22 16 16 O -0.57 -29.82 16.12 -3.05 -0.05 -29.87 16 17 C -0.12 -5.14 5.35 71.23 0.38 -4.76 16 18 S -0.15 -8.86 20.57 -56.49 -1.16 -10.03 16 19 C -0.55 -32.20 9.50 67.95 0.65 -31.56 16 20 H 0.08 4.55 7.80 -2.91 -0.02 4.53 16 21 C 0.01 0.69 5.49 84.86 0.47 1.16 16 22 N -0.91 -57.35 13.22 21.65 0.29 -57.07 16 23 Si 1.00 44.58 29.55 68.60 2.03 46.61 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 27 C 0.10 2.88 6.30 86.86 0.55 3.43 16 28 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.10 0.38 6.18 -2.38 -0.01 0.37 16 32 H 0.10 0.42 7.94 -2.39 -0.02 0.40 16 33 H 0.16 1.15 6.17 -2.91 -0.02 1.13 16 34 H 0.06 1.29 8.04 -2.39 -0.02 1.27 16 35 H 0.07 0.96 8.09 -2.38 -0.02 0.94 16 36 H 0.07 1.55 6.12 -2.38 -0.01 1.53 16 37 H 0.08 0.32 7.82 -2.39 -0.02 0.30 16 38 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.08 1.91 5.70 -2.39 -0.01 1.89 16 41 H 0.11 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.10 4.20 8.14 -2.39 -0.02 4.18 16 45 H 0.11 4.36 8.14 -2.40 -0.02 4.34 16 46 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 47 H 0.06 1.89 8.04 -2.38 -0.02 1.87 16 48 H 0.06 2.03 6.07 -2.39 -0.01 2.02 16 Total: -1.00 -85.15 398.60 4.17 -80.98 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: 0.94 Total: 16.78 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 6.90 Total: 2.32 kcal Atomic # 7 Polarization: -86.82 SS G_CDS: -4.45 Total: -91.27 kcal Atomic # 8 Polarization: -45.31 SS G_CDS: -0.09 Total: -45.40 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.16 Total: -10.03 kcal Total: -85.15 4.17 -80.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746066373.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.253 kcal (2) G-P(sol) polarization free energy of solvation -85.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds