Wall clock time and date at job start Sat Apr 11 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47295 * 2 1 4 4 C 1.34778 * 120.00425 * 269.99867 * 3 2 1 5 5 O 1.21608 * 120.00545 * 179.97438 * 4 3 2 6 6 C 1.47108 * 119.99504 * 0.02562 * 4 3 2 7 7 C 1.32990 * 119.99793 * 174.82467 * 6 4 3 8 8 C 1.50696 * 120.00123 * 5.63571 * 7 6 4 9 9 C 1.50703 * 119.99767 * 185.63276 * 7 6 4 10 10 C 1.46503 * 120.00196 * 90.00332 * 3 2 1 11 11 H 1.09003 * 110.91609 * 2.44069 * 10 3 2 12 12 C 1.55150 * 111.00943 * 126.34972 * 10 3 2 13 13 C 1.54327 * 103.02458 * 153.37854 * 12 10 3 14 14 N 1.47018 * 107.26584 * 338.14116 * 13 12 10 15 15 C 1.34779 * 125.65136 * 178.84472 * 14 13 12 16 16 O 1.21278 * 120.00398 * 179.68919 * 15 14 13 17 17 C 1.50704 * 119.99715 * 359.69463 * 15 14 13 18 18 S 1.81005 * 109.46969 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99601 * 180.02562 * 18 17 15 20 20 H 1.07991 * 120.00340 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99417 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99594 * 179.97438 * 21 19 18 23 23 Si 1.86794 * 120.00176 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47395 * 270.00187 * 23 21 19 25 25 H 1.48497 * 109.47177 * 30.00632 * 23 21 19 26 26 H 1.48505 * 109.46890 * 150.00573 * 23 21 19 27 27 C 1.47422 * 108.70566 * 358.58638 * 14 13 12 28 28 H 1.09004 * 109.46948 * 300.00378 * 1 2 3 29 29 H 1.08996 * 109.46596 * 59.99859 * 1 2 3 30 30 H 1.08999 * 109.47310 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46959 * 239.99842 * 2 1 3 32 32 H 1.09002 * 109.47006 * 120.00001 * 2 1 3 33 33 H 1.08000 * 120.00237 * 354.83073 * 6 4 3 34 34 H 1.08993 * 109.47631 * 58.27458 * 8 7 6 35 35 H 1.09001 * 109.47083 * 178.28276 * 8 7 6 36 36 H 1.09002 * 109.47206 * 298.27614 * 8 7 6 37 37 H 1.08992 * 109.47189 * 0.02562 * 9 7 6 38 38 H 1.09006 * 109.47008 * 120.00212 * 9 7 6 39 39 H 1.08998 * 109.46852 * 240.00125 * 9 7 6 40 40 H 1.09002 * 110.72253 * 271.94178 * 12 10 3 41 41 H 1.09005 * 110.72192 * 35.03160 * 12 10 3 42 42 H 1.09004 * 109.99742 * 218.66372 * 13 12 10 43 43 H 1.09002 * 109.78101 * 97.49502 * 13 12 10 44 44 H 1.08998 * 109.47418 * 59.99798 * 17 15 14 45 45 H 1.08998 * 109.47233 * 299.99408 * 17 15 14 46 46 H 0.96997 * 120.00060 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.37243 * 143.19412 * 27 14 13 48 48 H 1.09006 * 110.36532 * 265.52045 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2431 2.0165 -1.1672 5 8 2.6481 3.1632 -1.1672 6 6 1.9974 1.3232 -2.4412 7 6 2.1198 1.9810 -3.5905 8 6 2.6323 3.3981 -3.5968 9 6 1.7460 1.3091 -4.8867 10 6 2.2627 2.0718 1.2687 11 1 2.0748 1.4102 2.1144 12 6 3.7030 2.6460 1.3211 13 6 3.5669 3.8386 2.2911 14 7 2.1494 4.2284 2.3072 15 6 1.6154 5.2185 3.0494 16 8 0.4284 5.4570 2.9785 17 6 2.4933 6.0295 3.9675 18 16 1.4901 7.2721 4.8194 19 6 2.7329 8.0519 5.7953 20 1 3.7563 7.7116 5.7390 21 6 2.3963 9.1028 6.6372 22 7 3.3246 9.6850 7.3666 23 14 0.6261 9.6910 6.7351 24 1 0.4015 10.7555 5.7245 25 1 -0.2892 8.5528 6.4670 26 1 0.3587 10.2322 8.0919 27 6 1.4099 3.3609 1.3723 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.7175 0.2801 -2.4431 34 1 3.6227 3.4284 -3.1428 35 1 2.6922 3.7583 -4.6238 36 1 1.9526 4.0329 -3.0283 37 1 1.3991 0.2960 -4.6839 38 1 0.9510 1.8745 -5.3729 39 1 2.6172 1.2712 -5.5406 40 1 4.3997 1.9049 1.7129 41 1 4.0187 2.9864 0.3348 42 1 4.1768 4.6728 1.9441 43 1 3.8802 3.5385 3.2910 44 1 3.2682 6.5265 3.3839 45 1 2.9574 5.3711 4.7017 46 1 3.0895 10.4197 7.9547 47 1 0.4212 3.1309 1.7695 48 1 1.3258 3.8395 0.3966 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746066378.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:19 Heat of formation + Delta-G solvation = -69.300622 kcal Electronic energy + Delta-G solvation = -27590.478750 eV Core-core repulsion = 23771.431168 eV Total energy + Delta-G solvation = -3819.047583 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78737 -40.59737 -38.46539 -36.83711 -36.22433 -34.69550 -33.05134 -31.16162 -30.81258 -29.77794 -28.65045 -28.18927 -27.82009 -24.77268 -24.25708 -23.05769 -20.90516 -20.82686 -19.66985 -18.91896 -18.30728 -18.03652 -17.54727 -17.15875 -16.68290 -16.43158 -16.12396 -15.68938 -15.52089 -15.11382 -14.93661 -14.90832 -14.72733 -14.60825 -14.34817 -14.23850 -13.83607 -13.68937 -13.47144 -13.36426 -13.29620 -13.18904 -13.03986 -12.85472 -12.75115 -12.71119 -12.52141 -12.46066 -12.31903 -12.09180 -11.89010 -11.71854 -11.19313 -11.10617 -10.58108 -10.33158 -10.16830 -9.81045 -9.51563 -9.04357 -8.53519 -6.25337 0.43686 0.91174 1.29686 1.40819 1.43991 1.49738 1.80209 2.20073 2.23925 2.31051 2.65160 2.84308 3.34862 3.50082 3.66039 3.77880 3.90181 3.94424 4.09137 4.13116 4.22736 4.26490 4.28301 4.35456 4.40671 4.53226 4.57808 4.59165 4.69013 4.70774 4.75042 4.81224 4.92041 4.93673 4.94156 4.98827 5.05114 5.12706 5.19243 5.23695 5.39203 5.55715 5.61598 5.68985 5.71018 6.09191 6.28483 6.47017 6.91153 6.97721 7.25478 8.58863 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.002273 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.589273 B =12314.839639 C =12612.613967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.600 5.600 4 C 0.535 3.465 5 O -0.565 6.565 6 C -0.245 4.245 7 C -0.032 4.032 8 C -0.116 4.116 9 C -0.123 4.123 10 C 0.148 3.852 11 H 0.129 0.871 12 C -0.134 4.134 13 C 0.098 3.902 14 N -0.611 5.611 15 C 0.547 3.453 16 O -0.566 6.566 17 C -0.100 4.100 18 S -0.175 6.175 19 C -0.528 4.528 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.915 5.915 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.238 1.238 26 H -0.255 1.255 27 C 0.099 3.901 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.156 0.844 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.115 0.885 46 H 0.278 0.722 47 H 0.062 0.938 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.542 -28.631 -23.649 37.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.019 4.019 3 N -0.332 5.332 4 C 0.329 3.671 5 O -0.446 6.446 6 C -0.265 4.265 7 C -0.034 4.034 8 C -0.172 4.172 9 C -0.180 4.180 10 C 0.043 3.957 11 H 0.146 0.854 12 C -0.172 4.172 13 C -0.025 4.025 14 N -0.345 5.345 15 C 0.335 3.665 16 O -0.445 6.445 17 C -0.251 4.251 18 S 0.052 5.948 19 C -0.676 4.676 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.552 5.552 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.162 1.162 26 H -0.180 1.180 27 C -0.025 4.025 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.174 0.826 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.130 0.870 41 H 0.102 0.898 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.124 0.876 45 H 0.134 0.866 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.037 -27.537 -23.562 36.299 hybrid contribution 0.907 0.827 0.643 1.385 sum -1.130 -26.710 -22.920 35.214 Atomic orbital electron populations 1.22231 0.95886 1.03304 1.01619 1.21927 0.94368 0.80146 1.05456 1.47841 1.65897 1.15280 1.04174 1.19129 0.76939 0.85790 0.85267 1.90776 1.46901 1.19165 1.87806 1.22632 1.11413 1.01942 0.90561 1.22856 0.89195 0.95363 0.95976 1.20940 1.01314 0.93529 1.01461 1.21068 1.02768 1.01055 0.93072 1.22103 0.94175 0.92135 0.87313 0.85361 1.23012 0.96968 0.96634 1.00601 1.22268 0.80379 0.98294 1.01525 1.48244 1.11086 1.33182 1.42014 1.19712 0.87477 0.79438 0.79878 1.90672 1.17541 1.68580 1.67667 1.23180 1.01330 0.99841 1.00727 1.84711 1.16396 1.40860 1.52853 1.22420 0.95554 1.21235 1.28379 0.91892 1.25553 1.01847 0.95011 0.93516 1.70010 1.35090 1.23890 1.26246 0.85872 0.80468 0.80862 0.79193 1.18810 1.16195 1.17956 1.22529 0.95873 0.91280 0.92791 0.93797 0.93239 0.89286 0.87769 0.88169 0.82619 0.91571 0.91369 0.92461 0.89761 0.89867 0.89506 0.86973 0.89830 0.91373 0.89100 0.87590 0.86645 0.91281 0.91923 0.92199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.42 10.24 71.98 0.74 -0.68 16 2 C 0.10 0.70 5.87 86.38 0.51 1.21 16 3 N -0.60 -8.82 2.56 -794.36 -2.03 -10.85 16 4 C 0.54 10.21 6.87 86.57 0.59 10.81 16 5 O -0.56 -15.01 9.13 -4.06 -0.04 -15.05 16 6 C -0.25 -3.20 8.85 23.43 0.21 -2.99 16 7 C -0.03 -0.42 6.11 -17.62 -0.11 -0.53 16 8 C -0.12 -2.07 8.34 71.23 0.59 -1.47 16 9 C -0.12 -0.76 10.04 71.24 0.72 -0.05 16 10 C 0.15 2.60 3.55 46.38 0.16 2.77 16 11 H 0.13 1.67 7.87 -2.39 -0.02 1.65 16 12 C -0.13 -2.37 6.28 31.78 0.20 -2.17 16 13 C 0.10 2.22 6.49 86.73 0.56 2.78 16 14 N -0.61 -18.92 3.33 -811.77 -2.70 -21.62 16 15 C 0.55 22.01 7.87 87.66 0.69 22.70 16 16 O -0.57 -27.32 16.12 -3.02 -0.05 -27.37 16 17 C -0.10 -4.18 5.35 71.24 0.38 -3.80 16 18 S -0.17 -9.33 18.55 -56.49 -1.05 -10.38 16 19 C -0.53 -31.73 10.04 67.96 0.68 -31.04 16 20 H 0.06 3.97 8.03 -2.92 -0.02 3.95 16 21 C 0.05 2.78 5.50 84.86 0.47 3.25 16 22 N -0.91 -56.57 13.97 21.65 0.30 -56.27 16 23 Si 0.91 46.19 27.74 68.60 1.90 48.09 16 24 H -0.26 -13.04 7.11 99.48 0.71 -12.34 16 25 H -0.24 -12.06 6.74 99.48 0.67 -11.39 16 26 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 27 C 0.10 2.73 6.30 86.86 0.55 3.28 16 28 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.10 0.30 6.04 -2.39 -0.01 0.29 16 32 H 0.10 0.35 7.94 -2.39 -0.02 0.33 16 33 H 0.16 1.01 5.99 -2.91 -0.02 0.99 16 34 H 0.07 1.38 7.32 -2.39 -0.02 1.37 16 35 H 0.07 0.93 8.00 -2.39 -0.02 0.91 16 36 H 0.06 1.34 7.14 -2.39 -0.02 1.33 16 37 H 0.08 0.26 7.82 -2.39 -0.02 0.24 16 38 H 0.08 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.87 5.70 -2.38 -0.01 1.85 16 42 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 43 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.11 4.22 8.14 -2.40 -0.02 4.20 16 45 H 0.12 4.37 8.14 -2.40 -0.02 4.35 16 46 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 47 H 0.06 1.85 8.04 -2.39 -0.02 1.83 16 48 H 0.06 1.96 6.07 -2.38 -0.01 1.95 16 Total: -1.00 -81.48 395.72 4.19 -77.29 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.91 Total: 12.08 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: 6.94 Total: 4.06 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -4.43 Total: -88.74 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -0.09 Total: -42.41 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.90 Total: 48.09 kcal Atomic # 16 Polarization: -9.33 SS G_CDS: -1.05 Total: -10.38 kcal Total: -81.48 4.19 -77.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746066378.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.991 kcal (2) G-P(sol) polarization free energy of solvation -81.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds