Wall clock time and date at job start Sat Apr 11 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46497 * 109.47566 * 2 1 4 4 C 1.34776 * 120.00012 * 270.00446 * 3 2 1 5 5 O 1.21278 * 120.00175 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.99941 * 359.97438 * 4 3 2 7 7 S 1.81001 * 109.47111 * 180.02562 * 6 4 3 8 8 C 1.76198 * 99.99992 * 179.97438 * 7 6 4 9 9 H 1.07998 * 120.00003 * 0.02562 * 8 7 6 10 10 C 1.38795 * 120.00037 * 179.97438 * 8 7 6 11 11 N 1.31634 * 120.00050 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00110 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.46908 * 89.99309 * 12 10 8 14 14 H 1.48500 * 109.47333 * 209.99643 * 12 10 8 15 15 H 1.48496 * 109.47074 * 329.99629 * 12 10 8 16 16 C 1.46495 * 119.99905 * 89.99862 * 3 2 1 17 17 H 1.09000 * 110.78470 * 3.24647 * 16 3 2 18 18 C 1.55405 * 110.85076 * 126.54264 * 16 3 2 19 19 C 1.54914 * 101.66697 * 153.69955 * 18 16 3 20 20 N 1.47426 * 104.82992 * 323.07703 * 19 18 16 21 21 C 1.34777 * 125.64500 * 204.16642 * 20 19 18 22 22 O 1.21280 * 119.99909 * 179.97438 * 21 20 19 23 23 C 1.50702 * 120.00100 * 359.95253 * 21 20 19 24 24 H 1.08998 * 115.55157 * 34.28270 * 23 21 20 25 25 C 1.52996 * 117.49955 * 248.61055 * 23 21 20 26 26 C 1.52996 * 117.49786 * 179.97438 * 23 21 20 27 27 H 1.09002 * 117.49908 * 0.02562 * 26 23 21 28 28 C 1.53005 * 117.50219 * 214.97924 * 26 23 21 29 29 C 1.47018 * 108.70517 * 24.12623 * 20 19 18 30 30 H 1.09005 * 109.46878 * 300.00153 * 1 2 3 31 31 H 1.08998 * 109.47151 * 59.99581 * 1 2 3 32 32 H 1.09001 * 109.47645 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46878 * 239.99847 * 2 1 3 34 34 H 1.09007 * 109.47321 * 120.00318 * 2 1 3 35 35 H 1.08998 * 109.47477 * 300.00674 * 6 4 3 36 36 H 1.09003 * 109.47086 * 60.00400 * 6 4 3 37 37 H 0.96999 * 119.99758 * 180.02562 * 11 10 8 38 38 H 1.09000 * 110.89538 * 35.62760 * 18 16 3 39 39 H 1.09001 * 111.03900 * 271.83245 * 18 16 3 40 40 H 1.08999 * 110.37121 * 204.23438 * 19 18 16 41 41 H 1.09003 * 110.36718 * 81.91343 * 19 18 16 42 42 H 1.09005 * 117.50059 * 0.02562 * 25 23 21 43 43 H 1.08998 * 117.50034 * 145.00204 * 25 23 21 44 44 H 1.09001 * 109.46680 * 60.00165 * 28 26 23 45 45 H 1.08994 * 109.47260 * 179.97438 * 28 26 23 46 46 H 1.09000 * 109.46881 * 300.00743 * 28 26 23 47 47 H 1.09002 * 109.88241 * 118.36067 * 29 20 19 48 48 H 1.09000 * 109.88049 * 239.37196 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2429 2.0165 -1.1672 5 8 2.6477 3.1597 -1.1672 6 6 1.9922 1.3059 -2.4723 7 16 2.3848 2.4147 -3.8481 8 6 2.0126 1.3582 -5.2082 9 1 1.6572 0.3540 -5.0305 10 6 2.1750 1.8170 -6.5080 11 7 1.8964 1.0280 -7.5242 12 14 2.7889 3.5543 -6.8155 13 1 4.2717 3.5482 -6.8965 14 1 2.2254 4.0596 -8.0931 15 1 2.3577 4.4361 -5.7012 16 6 2.2625 2.0717 1.2687 17 1 2.0876 1.4041 2.1124 18 6 3.7044 2.6495 1.3154 19 6 3.5356 3.8338 2.2997 20 7 2.2031 4.3878 1.9984 21 6 1.8029 5.6505 2.2472 22 8 0.6784 5.9988 1.9555 23 6 2.7525 6.6295 2.8882 24 1 3.8012 6.5158 2.6136 25 6 2.4413 7.0842 4.3155 26 6 2.2387 8.0477 3.1441 27 1 1.2137 8.2726 2.8492 28 6 3.2363 9.1982 2.9950 29 6 1.3834 3.3351 1.3807 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.6225 0.4186 -2.5299 36 1 0.9443 1.0115 -2.5302 37 1 2.0103 1.3485 -8.4325 38 1 4.0146 3.0005 0.3312 39 1 4.4081 1.9143 1.7059 40 1 4.3067 4.5844 2.1259 41 1 3.5751 3.4796 3.3298 42 1 1.5500 6.6749 4.7911 43 1 3.2853 7.2697 4.9799 44 1 3.6253 9.2121 1.9769 45 1 2.7353 10.1431 3.2051 46 1 4.0590 9.0589 3.6964 47 1 0.5143 3.1278 2.0051 48 1 1.0603 3.6510 0.3888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746070913.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:22 Heat of formation + Delta-G solvation = -39.453691 kcal Electronic energy + Delta-G solvation = -27829.895989 eV Core-core repulsion = 24012.142667 eV Total energy + Delta-G solvation = -3817.753323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.75709 -39.71917 -37.65101 -36.52577 -35.68744 -32.44840 -32.01709 -30.07600 -29.64203 -29.16973 -28.00622 -25.63614 -24.79990 -23.44559 -22.82770 -21.92077 -20.93754 -19.23129 -19.00511 -17.74745 -17.44691 -16.90045 -16.38213 -15.91705 -15.74284 -15.18511 -14.96791 -14.50604 -14.23833 -13.92559 -13.82997 -13.76557 -13.62754 -13.40262 -13.33888 -12.99808 -12.82520 -12.71432 -12.58525 -12.51745 -12.23036 -11.84737 -11.70790 -11.68628 -11.55327 -11.34385 -11.27217 -11.05335 -10.99624 -10.62372 -10.61955 -10.32005 -9.88584 -9.85926 -9.34189 -9.01287 -8.72008 -8.70212 -8.50116 -6.93001 -6.29984 -4.01710 2.40286 2.52052 2.83006 2.87549 3.18880 3.32090 3.50465 3.56777 3.57231 4.15738 4.30645 4.33265 4.47641 4.50329 4.54525 4.59896 4.71742 4.85955 4.87313 5.01962 5.05034 5.06032 5.08549 5.10773 5.16478 5.28479 5.32648 5.34816 5.41033 5.49301 5.57202 5.60001 5.62835 5.65972 5.70941 5.78942 5.79862 5.87681 5.93007 6.04095 6.07191 6.15445 6.18243 6.61349 7.36176 7.40823 7.93098 8.11158 8.37229 8.40318 9.16380 10.79233 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011705 B = 0.003049 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.471651 B = 9182.463884 C =10887.345062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.106 3.894 3 N -0.612 5.612 4 C 0.532 3.468 5 O -0.506 6.506 6 C -0.122 4.122 7 S -0.142 6.142 8 C -0.520 4.520 9 H 0.088 0.912 10 C 0.096 3.904 11 N -0.880 5.880 12 Si 0.856 3.144 13 H -0.267 1.267 14 H -0.274 1.274 15 H -0.235 1.235 16 C 0.143 3.857 17 H 0.102 0.898 18 C -0.154 4.154 19 C 0.108 3.892 20 N -0.606 5.606 21 C 0.559 3.441 22 O -0.541 6.541 23 C -0.186 4.186 24 H 0.123 0.877 25 C -0.149 4.149 26 C -0.122 4.122 27 H 0.117 0.883 28 C -0.124 4.124 29 C 0.101 3.899 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.271 0.729 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.545 3.149 26.555 26.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.348 5.348 4 C 0.321 3.679 5 O -0.380 6.380 6 C -0.273 4.273 7 S 0.084 5.916 8 C -0.668 4.668 9 H 0.106 0.894 10 C -0.113 4.113 11 N -0.517 5.517 12 Si 0.681 3.319 13 H -0.192 1.192 14 H -0.199 1.199 15 H -0.159 1.159 16 C 0.038 3.962 17 H 0.120 0.880 18 C -0.192 4.192 19 C -0.016 4.016 20 N -0.340 5.340 21 C 0.348 3.652 22 O -0.418 6.418 23 C -0.207 4.207 24 H 0.141 0.859 25 C -0.186 4.186 26 C -0.140 4.140 27 H 0.135 0.865 28 C -0.181 4.181 29 C -0.023 4.023 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.122 0.878 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.496 5.063 26.195 26.908 hybrid contribution -0.225 -1.042 -0.508 1.181 sum 3.271 4.021 25.687 26.204 Atomic orbital electron populations 1.22250 0.95746 1.02452 1.02864 1.21627 0.94654 0.81873 1.03552 1.47940 1.67623 1.14407 1.04798 1.20316 0.76597 0.86523 0.84508 1.90684 1.43331 1.17201 1.86771 1.23362 1.05415 1.03307 0.95174 1.84813 1.88027 1.21251 0.97525 1.22295 1.51764 1.01841 0.90878 0.89406 1.24705 0.93778 0.97896 0.94891 1.69938 1.46603 1.36261 0.98886 0.86746 0.80218 0.85085 0.79879 1.19226 1.19924 1.15936 1.21961 0.94882 0.92995 0.86371 0.87986 1.23367 0.96404 0.97023 1.02448 1.22264 0.84792 0.96102 0.98419 1.48152 1.14645 1.10165 1.61028 1.19278 0.87289 0.80500 0.78149 1.90703 1.21052 1.77046 1.52993 1.22253 1.00091 0.97051 1.01269 0.85920 1.23092 1.03522 1.02604 0.89419 1.22395 1.01550 0.89110 1.00991 0.86485 1.21404 0.97739 0.96713 1.02226 1.22223 0.93477 0.86819 0.99780 0.92461 0.91806 0.91341 0.89570 0.90367 0.88588 0.88497 0.91936 0.87472 0.89889 0.90373 0.91301 0.88404 0.87819 0.91768 0.91646 0.92378 0.91693 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.15 0.38 -1.22 16 2 C 0.11 0.98 5.93 -4.05 -0.02 0.95 16 3 N -0.61 -7.52 2.54 -163.88 -0.42 -7.94 16 4 C 0.53 9.07 6.80 -10.98 -0.07 9.00 16 5 O -0.51 -10.25 12.22 5.56 0.07 -10.18 16 6 C -0.12 -2.31 4.71 36.01 0.17 -2.14 16 7 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 8 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 9 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 10 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 11 N -0.88 -26.53 13.97 55.49 0.78 -25.76 16 12 Si 0.86 21.89 27.74 -169.99 -4.71 17.17 16 13 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.24 -6.06 6.74 56.52 0.38 -5.67 16 16 C 0.14 1.51 3.45 -65.96 -0.23 1.28 16 17 H 0.10 0.77 7.86 -51.93 -0.41 0.36 16 18 C -0.15 -1.59 6.40 -24.44 -0.16 -1.74 16 19 C 0.11 0.99 6.70 -2.53 -0.02 0.98 16 20 N -0.61 -7.79 3.33 -170.52 -0.57 -8.35 16 21 C 0.56 8.02 7.63 -10.98 -0.08 7.93 16 22 O -0.54 -9.92 16.58 5.56 0.09 -9.83 16 23 C -0.19 -1.93 5.25 -91.77 -0.48 -2.41 16 24 H 0.12 1.08 7.06 -51.93 -0.37 0.71 16 25 C -0.15 -1.21 9.88 -26.72 -0.26 -1.47 16 26 C -0.12 -1.18 5.92 -90.61 -0.54 -1.72 16 27 H 0.12 1.35 7.67 -51.93 -0.40 0.95 16 28 C -0.12 -0.92 10.19 37.16 0.38 -0.55 16 29 C 0.10 1.35 6.12 -3.07 -0.02 1.33 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.72 7.22 -51.93 -0.38 0.35 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.09 0.83 6.44 -51.93 -0.33 0.50 16 34 H 0.08 0.51 7.93 -51.92 -0.41 0.10 16 35 H 0.10 1.68 7.40 -51.92 -0.38 1.30 16 36 H 0.10 1.75 7.19 -51.92 -0.37 1.38 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.11 1.52 5.69 -51.93 -0.30 1.23 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.08 0.66 7.00 -51.93 -0.36 0.30 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.10 0.60 8.05 -51.93 -0.42 0.19 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.08 1.48 6.41 -51.93 -0.33 1.14 16 LS Contribution 395.94 15.07 5.97 5.97 Total: -1.00 -35.91 395.94 -9.36 -45.28 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.83 Total: 0.86 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -0.74 Total: -1.64 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.21 Total: -42.05 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.16 Total: -20.01 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.17 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.91 -9.36 -45.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746070913.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.823 kcal (2) G-P(sol) polarization free energy of solvation -35.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds