Wall clock time and date at job start Sat Apr 11 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46574 * 2 1 4 4 C 1.34780 * 120.00067 * 269.99605 * 3 2 1 5 5 O 1.21276 * 120.00534 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.99891 * 359.97438 * 4 3 2 7 7 S 1.81003 * 109.47308 * 180.02562 * 6 4 3 8 8 C 1.76200 * 100.00037 * 180.02562 * 7 6 4 9 9 H 1.08008 * 120.00024 * 359.97438 * 8 7 6 10 10 C 1.38795 * 120.00031 * 180.02562 * 8 7 6 11 11 N 1.31631 * 119.99887 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00187 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46797 * 59.99651 * 12 10 8 14 14 H 1.48498 * 109.47006 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47200 * 300.00146 * 12 10 8 16 16 C 1.46500 * 120.00438 * 89.99973 * 3 2 1 17 17 H 1.08998 * 110.90973 * 3.89751 * 16 3 2 18 18 C 1.55155 * 111.00429 * 127.79953 * 16 3 2 19 19 C 1.54337 * 103.02070 * 153.38571 * 18 16 3 20 20 N 1.47021 * 107.26261 * 338.14065 * 19 18 16 21 21 C 1.34777 * 125.65024 * 178.85492 * 20 19 18 22 22 O 1.21283 * 120.00463 * 179.69059 * 21 20 19 23 23 C 1.50700 * 119.99675 * 359.41182 * 21 20 19 24 24 C 1.53004 * 109.47208 * 180.27843 * 23 21 20 25 25 C 1.52991 * 117.49969 * 243.62366 * 24 23 21 26 26 C 1.53003 * 117.49995 * 174.99760 * 24 23 21 27 27 C 1.47426 * 108.70410 * 358.58246 * 20 19 18 28 28 H 1.08996 * 109.46618 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47588 * 300.00186 * 1 2 3 30 30 H 1.09004 * 109.47016 * 60.00533 * 1 2 3 31 31 H 1.08996 * 109.47588 * 239.99814 * 2 1 3 32 32 H 1.08996 * 109.47264 * 119.99359 * 2 1 3 33 33 H 1.09002 * 109.47139 * 300.00495 * 6 4 3 34 34 H 1.09006 * 109.46937 * 60.00226 * 6 4 3 35 35 H 0.97006 * 119.99741 * 179.97438 * 11 10 8 36 36 H 1.09005 * 110.72236 * 271.93806 * 18 16 3 37 37 H 1.08992 * 110.72541 * 35.03873 * 18 16 3 38 38 H 1.08996 * 109.99222 * 218.66804 * 19 18 16 39 39 H 1.09001 * 109.78136 * 97.49276 * 19 18 16 40 40 H 1.09009 * 109.47352 * 300.27556 * 23 21 20 41 41 H 1.08998 * 109.47585 * 60.27844 * 23 21 20 42 42 H 1.09004 * 115.54873 * 29.33026 * 24 23 21 43 43 H 1.09000 * 117.50132 * 359.97438 * 25 24 23 44 44 H 1.09001 * 117.50696 * 145.02062 * 25 24 23 45 45 H 1.09000 * 117.49785 * 214.97839 * 26 24 23 46 46 H 1.08994 * 117.49772 * 0.02562 * 26 24 23 47 47 H 1.09003 * 110.36374 * 143.19460 * 27 20 19 48 48 H 1.09001 * 110.36951 * 265.52048 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6475 3.1599 -1.1673 6 6 1.9924 1.3060 -2.4723 7 16 2.3851 2.4147 -3.8481 8 6 2.0117 1.3586 -5.2083 9 1 1.6567 0.3541 -5.0305 10 6 2.1748 1.8171 -6.5081 11 7 2.6080 3.0411 -6.7247 12 14 1.7797 0.6973 -7.9501 13 1 0.3514 0.2955 -7.8879 14 1 2.0354 1.4194 -9.2222 15 1 2.6375 -0.5132 -7.8864 16 6 2.2624 2.0720 1.2687 17 1 2.0993 1.4029 2.1135 18 6 3.6903 2.6776 1.3063 19 6 3.5396 3.8630 2.2831 20 7 2.1142 4.2213 2.3178 21 6 1.5673 5.1964 3.0705 22 8 0.3746 5.4089 3.0148 23 6 2.4371 6.0187 3.9861 24 6 1.5740 7.0431 4.7255 25 6 1.8495 8.5239 4.4571 26 6 2.2548 7.9005 5.7943 27 6 1.3829 3.3416 1.3879 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8935 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.6230 0.4187 -2.5297 34 1 0.9446 1.0113 -2.5303 35 1 2.7223 3.3614 -7.6332 36 1 4.4078 1.9505 1.6867 37 1 3.9865 3.0289 0.3180 38 1 4.1267 4.7118 1.9325 39 1 3.8714 3.5657 3.2780 40 1 2.9240 5.3644 4.7094 41 1 3.1943 6.5380 3.3987 42 1 0.5398 6.7471 4.9013 43 1 2.6458 8.7684 3.7542 44 1 0.9965 9.2026 4.4562 45 1 1.6684 8.1689 6.6730 46 1 3.3176 7.7351 5.9705 47 1 0.4043 3.0882 1.7958 48 1 1.2765 3.8221 0.4153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746071203.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:37 Heat of formation + Delta-G solvation = -40.650391 kcal Electronic energy + Delta-G solvation = -27471.018330 eV Core-core repulsion = 23653.213115 eV Total energy + Delta-G solvation = -3817.805215 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.66687 -39.53641 -37.62438 -36.76168 -35.63909 -32.44980 -32.14617 -30.11143 -29.84479 -29.47293 -27.55526 -25.50309 -23.76013 -23.37140 -22.62694 -21.94205 -20.97568 -19.35583 -18.93065 -17.71441 -17.29710 -16.91000 -16.38398 -16.12784 -15.62012 -15.18056 -14.82245 -14.67905 -14.40686 -14.32354 -13.92985 -13.86606 -13.59586 -13.33649 -13.24204 -12.85868 -12.81444 -12.56882 -12.44793 -12.34276 -11.81874 -11.77174 -11.75152 -11.58243 -11.44414 -11.22030 -11.08019 -11.04166 -10.95309 -10.77821 -10.62317 -10.28384 -9.88172 -9.84123 -9.23975 -9.07793 -8.84798 -8.50946 -8.25957 -6.52551 -6.23553 -3.94420 2.55484 2.59190 2.93466 3.02191 3.21865 3.24559 3.27710 3.53824 3.56985 4.18269 4.21720 4.42634 4.45805 4.59923 4.63086 4.66772 4.85811 4.86517 4.95167 5.06100 5.10999 5.12692 5.15287 5.17841 5.26499 5.30899 5.34896 5.37690 5.44503 5.50455 5.61278 5.64590 5.69749 5.73004 5.81355 5.85232 5.88609 5.97220 6.02268 6.04128 6.09071 6.14701 6.21611 6.69178 7.41056 7.44839 7.57251 8.08135 8.32818 8.46691 9.21729 10.83739 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.002373 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.761142 B =11794.784589 C =12734.912254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.108 3.892 3 N -0.613 5.613 4 C 0.536 3.464 5 O -0.507 6.507 6 C -0.152 4.152 7 S -0.060 6.060 8 C -0.536 4.536 9 H 0.072 0.928 10 C 0.074 3.926 11 N -0.867 5.867 12 Si 0.918 3.082 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.274 1.274 16 C 0.141 3.859 17 H 0.099 0.901 18 C -0.154 4.154 19 C 0.108 3.892 20 N -0.615 5.615 21 C 0.531 3.469 22 O -0.540 6.540 23 C -0.104 4.104 24 C -0.141 4.141 25 C -0.178 4.178 26 C -0.181 4.181 27 C 0.095 3.905 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.269 0.731 36 H 0.080 0.920 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.749 -1.653 24.235 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.016 4.016 3 N -0.348 5.348 4 C 0.324 3.676 5 O -0.381 6.381 6 C -0.302 4.302 7 S 0.166 5.834 8 C -0.684 4.684 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.502 5.502 12 Si 0.744 3.256 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.199 1.199 16 C 0.036 3.964 17 H 0.117 0.883 18 C -0.192 4.192 19 C -0.015 4.015 20 N -0.350 5.350 21 C 0.319 3.681 22 O -0.417 6.417 23 C -0.144 4.144 24 C -0.160 4.160 25 C -0.215 4.215 26 C -0.218 4.218 27 C -0.029 4.029 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.136 0.864 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.112 0.888 47 H 0.093 0.907 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.729 0.354 24.106 24.171 hybrid contribution -0.691 -2.158 -0.988 2.472 sum 1.038 -1.805 23.118 23.212 Atomic orbital electron populations 1.22251 0.95841 1.02315 1.02886 1.21594 0.94581 0.82004 1.03383 1.47910 1.67697 1.14336 1.04843 1.20349 0.76310 0.86477 0.84429 1.90649 1.43449 1.17318 1.86716 1.23610 1.04842 1.04564 0.97213 1.85383 1.86758 1.17905 0.93315 1.22806 1.51932 1.01437 0.92199 0.91007 1.24987 0.94648 0.95539 0.98373 1.70007 1.42825 1.15635 1.21784 0.86235 0.78974 0.80033 0.80331 1.19930 1.20809 1.19934 1.22024 0.94872 0.93147 0.86351 0.88277 1.23169 0.96799 0.96663 1.02562 1.21985 0.81945 0.98211 0.99405 1.48349 1.09190 1.34711 1.42728 1.20229 0.88466 0.79235 0.80121 1.90698 1.15902 1.67936 1.67160 1.21188 0.97951 0.97377 0.97902 1.22064 1.00760 0.91480 1.01688 1.23043 1.03484 0.95745 0.99208 1.22996 1.01070 1.04607 0.93104 1.22599 0.95364 0.90067 0.94848 0.91482 0.92451 0.91799 0.89649 0.90534 0.89278 0.89188 0.92117 0.90154 0.87164 0.90996 0.91490 0.88612 0.88745 0.86423 0.88731 0.88700 0.88714 0.88785 0.90707 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.11 1.04 5.93 -4.04 -0.02 1.02 16 3 N -0.61 -7.81 2.56 -163.68 -0.42 -8.23 16 4 C 0.54 9.36 6.97 -10.98 -0.08 9.28 16 5 O -0.51 -10.46 11.90 5.56 0.07 -10.39 16 6 C -0.15 -2.94 4.71 36.01 0.17 -2.77 16 7 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 8 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 9 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 10 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 11 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 12 Si 0.92 21.19 29.55 -169.99 -5.02 16.16 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 C 0.14 1.58 3.56 -65.78 -0.23 1.35 16 17 H 0.10 0.86 7.86 -51.93 -0.41 0.45 16 18 C -0.15 -1.65 6.27 -24.89 -0.16 -1.81 16 19 C 0.11 1.03 6.49 -3.06 -0.02 1.01 16 20 N -0.61 -7.62 3.33 -170.51 -0.57 -8.18 16 21 C 0.53 6.97 7.85 -10.98 -0.09 6.89 16 22 O -0.54 -9.20 15.82 5.55 0.09 -9.11 16 23 C -0.10 -0.95 5.17 -27.88 -0.14 -1.09 16 24 C -0.14 -1.35 5.41 -90.62 -0.49 -1.84 16 25 C -0.18 -1.53 10.18 -26.73 -0.27 -1.81 16 26 C -0.18 -1.32 10.25 -26.73 -0.27 -1.59 16 27 C 0.09 1.30 6.31 -2.53 -0.02 1.29 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.74 7.22 -51.93 -0.38 0.36 16 31 H 0.09 0.85 6.44 -51.93 -0.33 0.51 16 32 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 33 H 0.09 1.59 7.40 -51.91 -0.38 1.21 16 34 H 0.09 1.65 7.19 -51.91 -0.37 1.27 16 35 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.11 1.60 5.58 -51.93 -0.29 1.31 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 41 H 0.09 0.76 7.87 -51.93 -0.41 0.35 16 42 H 0.12 1.34 7.31 -51.93 -0.38 0.96 16 43 H 0.09 0.77 8.03 -51.93 -0.42 0.35 16 44 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 48 H 0.09 1.57 6.20 -51.93 -0.32 1.24 16 LS Contribution 399.07 15.07 6.01 6.01 Total: -1.00 -35.02 399.07 -10.24 -45.26 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.87 Total: 1.54 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -1.05 Total: -4.06 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.25 Total: -41.60 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.15 Total: -19.51 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.02 -10.24 -45.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746071203.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.610 kcal (2) G-P(sol) polarization free energy of solvation -35.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds