Wall clock time and date at job start Sat Apr 11 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.46574 * 2 1 4 4 C 1.34780 * 120.00067 * 269.99605 * 3 2 1 5 5 O 1.21276 * 120.00534 * 180.02562 * 4 3 2 6 6 C 1.50699 * 119.99891 * 359.97438 * 4 3 2 7 7 S 1.81003 * 109.47308 * 180.02562 * 6 4 3 8 8 C 1.76200 * 100.00037 * 180.02562 * 7 6 4 9 9 H 1.08008 * 120.00024 * 359.97438 * 8 7 6 10 10 C 1.38795 * 120.00031 * 180.02562 * 8 7 6 11 11 N 1.31631 * 119.99887 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00187 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.46797 * 59.99651 * 12 10 8 14 14 H 1.48498 * 109.47006 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47200 * 300.00146 * 12 10 8 16 16 C 1.46500 * 120.00438 * 89.99973 * 3 2 1 17 17 H 1.08998 * 110.90973 * 3.89751 * 16 3 2 18 18 C 1.55155 * 111.00429 * 127.79953 * 16 3 2 19 19 C 1.54337 * 103.02070 * 153.38571 * 18 16 3 20 20 N 1.47021 * 107.26261 * 338.14065 * 19 18 16 21 21 C 1.34777 * 125.65024 * 178.85492 * 20 19 18 22 22 O 1.21283 * 120.00463 * 179.69059 * 21 20 19 23 23 C 1.50700 * 119.99675 * 359.41182 * 21 20 19 24 24 C 1.53004 * 109.47208 * 180.27843 * 23 21 20 25 25 C 1.52991 * 117.49969 * 243.62366 * 24 23 21 26 26 C 1.53003 * 117.49995 * 174.99760 * 24 23 21 27 27 C 1.47426 * 108.70410 * 358.58246 * 20 19 18 28 28 H 1.08996 * 109.46618 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47588 * 300.00186 * 1 2 3 30 30 H 1.09004 * 109.47016 * 60.00533 * 1 2 3 31 31 H 1.08996 * 109.47588 * 239.99814 * 2 1 3 32 32 H 1.08996 * 109.47264 * 119.99359 * 2 1 3 33 33 H 1.09002 * 109.47139 * 300.00495 * 6 4 3 34 34 H 1.09006 * 109.46937 * 60.00226 * 6 4 3 35 35 H 0.97006 * 119.99741 * 179.97438 * 11 10 8 36 36 H 1.09005 * 110.72236 * 271.93806 * 18 16 3 37 37 H 1.08992 * 110.72541 * 35.03873 * 18 16 3 38 38 H 1.08996 * 109.99222 * 218.66804 * 19 18 16 39 39 H 1.09001 * 109.78136 * 97.49276 * 19 18 16 40 40 H 1.09009 * 109.47352 * 300.27556 * 23 21 20 41 41 H 1.08998 * 109.47585 * 60.27844 * 23 21 20 42 42 H 1.09004 * 115.54873 * 29.33026 * 24 23 21 43 43 H 1.09000 * 117.50132 * 359.97438 * 25 24 23 44 44 H 1.09001 * 117.50696 * 145.02062 * 25 24 23 45 45 H 1.09000 * 117.49785 * 214.97839 * 26 24 23 46 46 H 1.08994 * 117.49772 * 0.02562 * 26 24 23 47 47 H 1.09003 * 110.36374 * 143.19460 * 27 20 19 48 48 H 1.09001 * 110.36951 * 265.52048 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2429 2.0166 -1.1672 5 8 2.6475 3.1599 -1.1673 6 6 1.9924 1.3060 -2.4723 7 16 2.3851 2.4147 -3.8481 8 6 2.0117 1.3586 -5.2083 9 1 1.6567 0.3541 -5.0305 10 6 2.1748 1.8171 -6.5081 11 7 2.6080 3.0411 -6.7247 12 14 1.7797 0.6973 -7.9501 13 1 0.3514 0.2955 -7.8879 14 1 2.0354 1.4194 -9.2222 15 1 2.6375 -0.5132 -7.8864 16 6 2.2624 2.0720 1.2687 17 1 2.0993 1.4029 2.1135 18 6 3.6903 2.6776 1.3063 19 6 3.5396 3.8630 2.2831 20 7 2.1142 4.2213 2.3178 21 6 1.5673 5.1964 3.0705 22 8 0.3746 5.4089 3.0148 23 6 2.4371 6.0187 3.9861 24 6 1.5740 7.0431 4.7255 25 6 1.8495 8.5239 4.4571 26 6 2.2548 7.9005 5.7943 27 6 1.3829 3.3416 1.3879 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8935 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 2.6230 0.4187 -2.5297 34 1 0.9446 1.0113 -2.5303 35 1 2.7223 3.3614 -7.6332 36 1 4.4078 1.9505 1.6867 37 1 3.9865 3.0289 0.3180 38 1 4.1267 4.7118 1.9325 39 1 3.8714 3.5657 3.2780 40 1 2.9240 5.3644 4.7094 41 1 3.1943 6.5380 3.3987 42 1 0.5398 6.7471 4.9013 43 1 2.6458 8.7684 3.7542 44 1 0.9965 9.2026 4.4562 45 1 1.6684 8.1689 6.6730 46 1 3.3176 7.7351 5.9705 47 1 0.4043 3.0882 1.7958 48 1 1.2765 3.8221 0.4153 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746071203.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:36 Heat of formation + Delta-G solvation = -62.572416 kcal Electronic energy + Delta-G solvation = -27471.968941 eV Core-core repulsion = 23653.213115 eV Total energy + Delta-G solvation = -3818.755826 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.74796 -40.63979 -38.51824 -37.71275 -36.74796 -34.59189 -33.13235 -31.14797 -30.74030 -30.64821 -28.62577 -27.64139 -24.74736 -24.28797 -23.23386 -22.88312 -21.75486 -20.49223 -20.17674 -19.34136 -18.39225 -17.98721 -17.53214 -17.01274 -16.88773 -16.74670 -16.45010 -15.80240 -15.56406 -15.28079 -14.94464 -14.84561 -14.75678 -14.51947 -14.38784 -14.15334 -13.84943 -13.75271 -13.44827 -13.34811 -13.18098 -12.89587 -12.76683 -12.63743 -12.57548 -12.44842 -12.37118 -12.29479 -12.17465 -11.81266 -11.73796 -11.32977 -11.13426 -11.04450 -10.79894 -10.57179 -10.26902 -9.90084 -9.57341 -8.66972 -8.35289 -6.13082 1.23644 1.42680 1.43052 1.52132 1.56301 1.56856 1.80253 2.21842 2.27842 2.89665 2.98773 3.24466 3.36578 3.55994 3.70678 3.74510 3.74955 3.98941 4.02133 4.10588 4.15544 4.20823 4.22486 4.28944 4.39670 4.46745 4.48804 4.55649 4.60297 4.61717 4.70328 4.75072 4.77510 4.79628 4.92493 4.98251 5.00455 5.04010 5.14360 5.23814 5.26031 5.33816 5.35830 5.40547 5.69879 6.18548 6.28408 6.47204 7.05958 7.08689 7.15696 8.73532 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016557 B = 0.002373 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.761142 B =11794.784589 C =12734.912254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.598 5.598 4 C 0.534 3.466 5 O -0.547 6.547 6 C -0.125 4.125 7 S -0.151 6.151 8 C -0.545 4.545 9 H 0.082 0.918 10 C 0.013 3.987 11 N -0.911 5.911 12 Si 0.997 3.003 13 H -0.263 1.263 14 H -0.280 1.280 15 H -0.260 1.260 16 C 0.146 3.854 17 H 0.143 0.857 18 C -0.150 4.150 19 C 0.107 3.893 20 N -0.616 5.616 21 C 0.521 3.479 22 O -0.592 6.592 23 C -0.093 4.093 24 C -0.162 4.162 25 C -0.192 4.192 26 C -0.154 4.154 27 C 0.094 3.906 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.271 0.729 36 H 0.115 0.885 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.112 0.888 40 H 0.129 0.871 41 H 0.108 0.892 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.115 0.885 47 H 0.067 0.933 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 -4.407 26.667 27.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.332 5.332 4 C 0.322 3.678 5 O -0.424 6.424 6 C -0.276 4.276 7 S 0.076 5.924 8 C -0.693 4.693 9 H 0.100 0.900 10 C -0.192 4.192 11 N -0.548 5.548 12 Si 0.818 3.182 13 H -0.188 1.188 14 H -0.205 1.205 15 H -0.184 1.184 16 C 0.042 3.958 17 H 0.161 0.839 18 C -0.189 4.189 19 C -0.015 4.015 20 N -0.349 5.349 21 C 0.312 3.688 22 O -0.472 6.472 23 C -0.132 4.132 24 C -0.181 4.181 25 C -0.229 4.229 26 C -0.191 4.191 27 C -0.030 4.030 28 H 0.109 0.891 29 H 0.078 0.922 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.126 0.874 34 H 0.118 0.882 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.130 0.870 40 H 0.147 0.853 41 H 0.126 0.874 42 H 0.109 0.891 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.121 0.879 46 H 0.133 0.867 47 H 0.085 0.915 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.944 -2.443 26.578 26.852 hybrid contribution -1.117 -1.306 -1.634 2.371 sum 1.827 -3.748 24.944 25.290 Atomic orbital electron populations 1.22226 0.95730 1.03469 1.01577 1.21940 0.94621 0.80091 1.05493 1.47879 1.66020 1.15369 1.03901 1.20044 0.76581 0.85956 0.85216 1.90652 1.45506 1.18950 1.87312 1.23429 1.05619 1.03239 0.95342 1.85543 1.87464 1.22094 0.97251 1.23152 1.51742 1.01718 0.92688 0.89995 1.26123 0.94201 0.97154 1.01696 1.70180 1.44234 1.17882 1.22483 0.85028 0.79265 0.77930 0.75943 1.18810 1.20465 1.18411 1.22265 0.94524 0.92613 0.86393 0.83919 1.23120 0.96953 0.97840 1.00964 1.22217 0.80000 0.97855 1.01438 1.48507 1.10424 1.34256 1.41762 1.21084 0.88367 0.79117 0.80251 1.90670 1.18334 1.69325 1.68903 1.21221 0.97154 0.97131 0.97675 1.22011 1.00067 0.92116 1.03905 1.23133 1.03699 0.95181 1.00875 1.23089 1.02084 1.01630 0.92308 1.22423 0.96264 0.91465 0.92896 0.89072 0.92233 0.94667 0.89678 0.86310 0.87351 0.88206 0.92037 0.86659 0.91320 0.90997 0.87022 0.85314 0.87381 0.89059 0.88244 0.89298 0.87935 0.86662 0.91459 0.94054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 10.24 71.98 0.74 -2.16 16 2 C 0.10 1.62 5.93 86.38 0.51 2.13 16 3 N -0.60 -14.41 2.56 -790.15 -2.02 -16.44 16 4 C 0.53 19.03 6.97 87.66 0.61 19.64 16 5 O -0.55 -23.85 11.90 -3.02 -0.04 -23.89 16 6 C -0.13 -4.92 4.71 71.24 0.34 -4.58 16 7 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 8 C -0.55 -31.05 9.50 67.95 0.65 -30.41 16 9 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 10 C 0.01 0.74 5.49 84.86 0.47 1.21 16 11 N -0.91 -56.17 13.22 21.65 0.29 -55.89 16 12 Si 1.00 43.55 29.55 68.60 2.03 45.58 16 13 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 14 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 16 C 0.15 2.96 3.56 46.38 0.16 3.13 16 17 H 0.14 1.76 7.86 -2.39 -0.02 1.74 16 18 C -0.15 -2.91 6.27 31.79 0.20 -2.71 16 19 C 0.11 1.76 6.49 86.73 0.56 2.32 16 20 N -0.62 -14.86 3.33 -811.77 -2.70 -17.56 16 21 C 0.52 13.67 7.85 87.66 0.69 14.36 16 22 O -0.59 -21.22 15.82 -3.04 -0.05 -21.27 16 23 C -0.09 -1.52 5.17 29.85 0.15 -1.36 16 24 C -0.16 -3.00 5.41 -10.79 -0.06 -3.06 16 25 C -0.19 -3.20 10.18 30.59 0.31 -2.89 16 26 C -0.15 -1.91 10.25 30.60 0.31 -1.59 16 27 C 0.09 2.63 6.31 86.85 0.55 3.18 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.03 0.79 7.22 -2.38 -0.02 0.77 16 31 H 0.08 1.43 6.44 -2.39 -0.02 1.42 16 32 H 0.12 1.04 7.93 -2.39 -0.02 1.02 16 33 H 0.11 3.80 7.40 -2.39 -0.02 3.78 16 34 H 0.10 3.70 7.19 -2.39 -0.02 3.68 16 35 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 36 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 37 H 0.07 2.00 5.58 -2.39 -0.01 1.98 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.11 1.50 7.87 -2.39 -0.02 1.48 16 42 H 0.09 2.18 7.31 -2.38 -0.02 2.16 16 43 H 0.10 1.53 8.03 -2.39 -0.02 1.51 16 44 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.07 1.93 8.04 -2.39 -0.02 1.91 16 48 H 0.04 1.57 6.20 -2.39 -0.01 1.55 16 Total: -1.00 -84.25 399.07 3.48 -80.77 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.94 Total: 20.98 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.19 Total: -2.79 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -4.44 Total: -89.88 kcal Atomic # 8 Polarization: -45.07 SS G_CDS: -0.08 Total: -45.15 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -84.25 3.48 -80.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746071203.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.193 kcal (2) G-P(sol) polarization free energy of solvation -84.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds