Wall clock time and date at job start Sat Apr 11 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 5 5 N 1.46505 * 109.47119 * 65.00050 * 4 2 1 6 6 C 1.34782 * 120.00001 * 179.97438 * 5 4 2 7 7 O 1.21278 * 119.99688 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99764 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.46992 * 179.97438 * 8 6 5 10 10 C 1.76191 * 99.99976 * 180.02562 * 9 8 6 11 11 H 1.08001 * 120.00579 * 359.97438 * 10 9 8 12 12 C 1.38804 * 120.00162 * 180.02562 * 10 9 8 13 13 N 1.31636 * 119.99571 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00286 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.46803 * 59.99889 * 14 12 10 16 16 H 1.48500 * 109.47147 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47070 * 300.00066 * 14 12 10 18 18 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 19 19 N 1.46492 * 109.47290 * 295.00228 * 18 2 1 20 20 C 1.34781 * 120.00279 * 179.97438 * 19 18 2 21 21 O 1.21276 * 119.99695 * 0.02562 * 20 19 18 22 22 C 1.50699 * 120.00326 * 179.97438 * 20 19 18 23 23 H 1.09002 * 110.67335 * 300.70603 * 22 20 19 24 24 C 1.54893 * 110.75545 * 63.93541 * 22 20 19 25 25 C 1.54466 * 104.10028 * 156.10762 * 24 22 20 26 26 H 1.09000 * 117.59901 * 116.94030 * 25 24 22 27 27 C 1.55467 * 118.47520 * 273.02342 * 25 24 22 28 28 C 1.52991 * 59.84160 * 93.30333 * 27 25 24 29 29 H 1.09005 * 119.29781 * 111.70696 * 28 27 25 30 30 C 1.54267 * 118.20362 * 265.85073 * 28 27 25 31 31 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 33 33 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 34 34 H 1.09000 * 109.47278 * 184.99561 * 4 2 1 35 35 H 1.08994 * 109.47510 * 305.00071 * 4 2 1 36 36 H 0.97002 * 120.00209 * 359.97438 * 5 4 2 37 37 H 1.09000 * 109.47421 * 299.99792 * 8 6 5 38 38 H 1.09004 * 109.46940 * 59.99787 * 8 6 5 39 39 H 0.96997 * 119.99863 * 179.97438 * 13 12 10 40 40 H 1.09002 * 109.47196 * 55.00329 * 18 2 1 41 41 H 1.09004 * 109.46881 * 174.99844 * 18 2 1 42 42 H 0.97008 * 120.00528 * 0.02562 * 19 18 2 43 43 H 1.08994 * 110.48876 * 274.93704 * 24 22 20 44 44 H 1.09005 * 110.48437 * 37.58104 * 24 22 20 45 45 H 1.08999 * 118.06520 * 346.16500 * 27 25 24 46 46 H 1.09004 * 117.16635 * 200.83748 * 27 25 24 47 47 H 1.09005 * 110.48413 * 330.32680 * 30 28 27 48 48 H 1.08998 * 110.49129 * 207.67776 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 1.6525 0.0355 -2.4424 6 6 1.9965 -0.4128 -3.6660 7 8 2.6273 -1.4425 -3.7792 8 6 1.5973 0.3653 -4.8933 9 16 2.2021 -0.4870 -6.3711 10 6 1.6125 0.6084 -7.6188 11 1 1.0590 1.4937 -7.3427 12 6 1.8586 0.3331 -8.9569 13 7 2.5320 -0.7467 -9.2936 14 14 1.2329 1.4941 -10.2798 15 1 1.8239 2.8411 -10.0761 16 1 1.6239 0.9784 -11.6163 17 1 -0.2471 1.5855 -10.1986 18 6 2.0401 -0.7213 1.2492 19 7 1.6525 0.0352 2.4423 20 6 1.9956 -0.4138 3.6659 21 8 2.6256 -1.4439 3.7792 22 6 1.5974 0.3647 4.8933 23 1 2.0128 1.3720 4.8616 24 6 0.0559 0.4110 5.0378 25 6 -0.1736 0.6535 6.5459 26 1 -0.6684 1.5794 6.8390 27 6 -0.2328 -0.5772 7.4940 28 6 1.0902 0.1577 7.2704 29 1 1.5316 0.7232 8.0912 30 6 2.0438 -0.3729 6.1800 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8900 34 1 3.1264 -0.7993 -1.2057 35 1 1.6055 -1.7197 -1.2953 36 1 1.1483 0.8592 -2.3518 37 1 0.5110 0.4426 -4.9371 38 1 2.0312 1.3642 -4.8472 39 1 2.7037 -0.9393 -10.2286 40 1 1.6055 -1.7199 1.2951 41 1 3.1264 -0.7995 1.2055 42 1 1.1482 0.8590 2.3518 43 1 -0.3580 1.2297 4.4493 44 1 -0.3844 -0.5389 4.7343 45 1 -0.3412 -1.5649 7.0459 46 1 -0.7272 -0.4411 8.4559 47 1 1.9267 -1.4502 6.0622 48 1 3.0770 -0.1248 6.4230 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746573005.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:39 Heat of formation + Delta-G solvation = -68.207229 kcal Electronic energy + Delta-G solvation = -25827.110711 eV Core-core repulsion = 22008.110541 eV Total energy + Delta-G solvation = -3819.000170 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80601 -39.42402 -38.86024 -37.05772 -34.57626 -32.79289 -32.43512 -31.90151 -29.38774 -28.76942 -27.30308 -25.90383 -25.38193 -23.79455 -21.53533 -21.03072 -20.42706 -20.26043 -20.02286 -17.89457 -17.43235 -16.94084 -16.67213 -16.26055 -15.91378 -15.55719 -15.30010 -14.87001 -14.80837 -14.40707 -13.95440 -13.82604 -13.72698 -13.57078 -13.47855 -13.15670 -12.95578 -12.87813 -12.56985 -12.13329 -11.95435 -11.84608 -11.74916 -11.61220 -11.51621 -11.39912 -11.25722 -11.05433 -11.04611 -10.77844 -10.53321 -10.32596 -10.01865 -9.83405 -9.46272 -9.43064 -9.07261 -8.91762 -8.24939 -6.51020 -6.22234 -3.93112 2.24896 2.66974 3.03879 3.07910 3.08160 3.22664 3.27110 3.30905 3.69988 3.88620 4.07509 4.19710 4.24341 4.37255 4.41898 4.50608 4.53475 4.62615 4.67653 4.83046 4.93642 5.01317 5.02553 5.12284 5.12786 5.17680 5.27682 5.28452 5.33538 5.38237 5.43527 5.53973 5.58396 5.61022 5.65253 5.66412 5.69492 5.84342 5.85529 5.87458 5.91020 6.04003 6.11657 6.56895 7.07199 7.58222 7.66644 7.83770 8.34046 8.59084 9.22820 10.85132 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.039083 B = 0.001429 C = 0.001397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.256842 B =19589.771090 C =20043.109497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.128 3.872 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.125 3.875 19 N -0.727 5.727 20 C 0.519 3.481 21 O -0.536 6.536 22 C -0.114 4.114 23 H 0.104 0.896 24 C -0.084 4.084 25 C -0.170 4.170 26 H 0.114 0.886 27 C -0.153 4.153 28 C -0.163 4.163 29 H 0.111 0.889 30 C -0.078 4.078 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.269 0.731 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.400 0.600 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.039 6.919 33.339 34.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 H 0.103 0.897 4 C 0.004 3.996 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.685 4.685 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C 0.001 3.999 19 N -0.380 5.380 20 C 0.305 3.695 21 O -0.412 6.412 22 C -0.135 4.135 23 H 0.122 0.878 24 C -0.122 4.122 25 C -0.188 4.188 26 H 0.132 0.868 27 C -0.190 4.190 28 C -0.181 4.181 29 H 0.129 0.871 30 C -0.115 4.115 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.231 0.769 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.235 0.765 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.113 0.887 46 H 0.117 0.883 47 H 0.100 0.900 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.421 4.311 33.055 33.773 hybrid contribution -1.616 2.886 -0.723 3.385 sum -7.036 7.197 32.333 33.863 Atomic orbital electron populations 1.21893 0.94001 1.02890 1.01951 1.21593 0.97109 1.00718 0.93940 0.89735 1.21165 1.00303 0.95414 0.82752 1.45969 1.59725 1.28136 1.05480 1.20312 0.78708 0.85490 0.83773 1.90712 1.38261 1.23863 1.86167 1.23529 1.04778 1.03447 0.98648 1.85417 1.72732 1.33012 0.92138 1.22828 1.41586 1.11317 0.92817 0.90986 1.24990 0.94833 0.95783 0.97912 1.70009 1.37389 1.24569 1.18287 0.86226 0.79176 0.80337 0.79769 1.19945 1.20791 1.19951 1.21309 1.00575 0.95417 0.82605 1.46008 1.58180 1.27960 1.05822 1.20511 0.78994 0.85593 0.84371 1.90729 1.39469 1.24390 1.86620 1.22516 0.97378 1.00482 0.93164 0.87754 1.21921 0.92938 1.02651 0.94652 1.23613 1.03524 0.99277 0.92367 0.86844 1.23461 0.99241 0.96124 1.00193 1.23276 0.89689 1.04458 1.00709 0.87139 1.21799 0.98575 1.00747 0.90421 0.91917 0.92546 0.91869 0.91248 0.91174 0.76862 0.89245 0.89247 0.92110 0.90851 0.90873 0.76513 0.90396 0.90803 0.88740 0.88276 0.89951 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.94 37.16 0.33 -0.56 16 2 C -0.11 -0.76 2.46 -90.62 -0.22 -0.99 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C 0.13 1.36 5.06 -4.04 -0.02 1.34 16 5 N -0.74 -9.09 5.28 -60.29 -0.32 -9.41 16 6 C 0.53 9.65 7.85 -10.98 -0.09 9.56 16 7 O -0.52 -11.64 15.86 5.56 0.09 -11.55 16 8 C -0.15 -3.02 6.16 36.01 0.22 -2.80 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 11 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 12 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 13 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 14 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 C 0.12 0.95 5.06 -4.05 -0.02 0.93 16 19 N -0.73 -4.57 5.26 -60.30 -0.32 -4.89 16 20 C 0.52 4.38 7.14 -10.98 -0.08 4.30 16 21 O -0.54 -6.87 15.75 5.56 0.09 -6.79 16 22 C -0.11 -0.65 3.28 -89.78 -0.29 -0.95 16 23 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 24 C -0.08 -0.39 6.09 -24.96 -0.15 -0.54 16 25 C -0.17 -0.80 7.03 -88.08 -0.62 -1.42 16 26 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 27 C -0.15 -0.77 10.22 -25.43 -0.26 -1.03 16 28 C -0.16 -0.87 6.85 -89.51 -0.61 -1.48 16 29 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 30 C -0.08 -0.52 5.68 -25.07 -0.14 -0.66 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.24 7.18 -51.93 -0.37 -0.13 16 33 H 0.06 0.38 7.18 -51.93 -0.37 0.01 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.40 3.66 7.65 -40.82 -0.31 3.35 16 37 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 38 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.40 1.46 7.65 -40.82 -0.31 1.15 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.70 7.48 -51.93 -0.39 0.32 16 48 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 407.08 15.07 6.13 6.13 Total: -1.00 -36.45 407.08 -10.65 -47.10 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -8.06 Total: -0.45 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.76 Total: -7.20 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: 0.10 Total: -39.66 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.18 Total: -18.34 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.45 -10.65 -47.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746573005.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.107 kcal (2) G-P(sol) polarization free energy of solvation -36.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds