Wall clock time and date at job start Sat Apr 11 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46895 * 2 1 4 4 C 1.53002 * 109.46855 * 120.00180 * 2 1 3 5 5 N 1.46494 * 109.47001 * 294.99674 * 4 2 1 6 6 C 1.34784 * 119.99635 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99961 * 180.02562 * 6 5 4 9 9 S 1.80996 * 109.47240 * 179.97438 * 8 6 5 10 10 C 1.76200 * 100.00090 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00086 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00048 * 179.97438 * 10 9 8 13 13 N 1.31631 * 119.99877 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99940 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47274 * 90.00007 * 14 12 10 16 16 H 1.48504 * 109.47283 * 209.99820 * 14 12 10 17 17 H 1.48499 * 109.47131 * 329.99824 * 14 12 10 18 18 C 1.53001 * 109.46907 * 240.00042 * 2 1 3 19 19 N 1.46499 * 109.46863 * 64.99833 * 18 2 1 20 20 C 1.34782 * 119.99783 * 179.97438 * 19 18 2 21 21 O 1.21277 * 120.00058 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.99886 * 180.02562 * 20 19 18 23 23 H 1.09002 * 110.67078 * 300.70282 * 22 20 19 24 24 C 1.54895 * 110.75713 * 63.93824 * 22 20 19 25 25 C 1.54466 * 104.09944 * 156.10517 * 24 22 20 26 26 H 1.09004 * 117.24407 * 116.56250 * 25 24 22 27 27 C 1.52991 * 118.37070 * 272.42250 * 25 24 22 28 28 C 1.53000 * 60.37835 * 93.63444 * 27 25 24 29 29 H 1.08994 * 119.75438 * 111.12245 * 28 27 25 30 30 C 1.54269 * 118.19621 * 266.38507 * 28 27 25 31 31 H 1.09006 * 109.47071 * 299.99600 * 1 2 3 32 32 H 1.08998 * 109.47147 * 59.99641 * 1 2 3 33 33 H 1.09000 * 109.47591 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46767 * 174.99740 * 4 2 1 35 35 H 1.09002 * 109.47113 * 55.00080 * 4 2 1 36 36 H 0.96995 * 120.00292 * 0.27801 * 5 4 2 37 37 H 1.09004 * 109.46932 * 300.00223 * 8 6 5 38 38 H 1.08997 * 109.47392 * 59.99562 * 8 6 5 39 39 H 0.97005 * 119.99703 * 180.02562 * 13 12 10 40 40 H 1.08998 * 109.46940 * 184.99754 * 18 2 1 41 41 H 1.09002 * 109.47108 * 305.00068 * 18 2 1 42 42 H 0.97003 * 120.00716 * 0.02562 * 19 18 2 43 43 H 1.09005 * 110.48472 * 274.93715 * 24 22 20 44 44 H 1.08998 * 110.48714 * 37.57555 * 24 22 20 45 45 H 1.09004 * 117.46441 * 346.03601 * 27 25 24 46 46 H 1.09001 * 117.46429 * 201.23139 * 27 25 24 47 47 H 1.09004 * 110.48282 * 329.10582 * 30 28 27 48 48 H 1.09002 * 110.48396 * 206.46800 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0353 2.4423 6 6 1.9964 -0.4132 3.6659 7 8 2.6264 -1.4434 3.7791 8 6 1.5973 0.3647 4.8933 9 16 2.2007 -0.4885 6.3711 10 6 1.6114 0.6070 7.6190 11 1 1.0587 1.4928 7.3429 12 6 1.8566 0.3311 8.9570 13 7 1.4159 1.1492 9.8892 14 14 2.8120 -1.2014 9.4347 15 1 4.2615 -0.8835 9.4914 16 1 2.3564 -1.6736 10.7669 17 1 2.5777 -2.2654 8.4256 18 6 2.0400 -0.7213 -1.2493 19 7 1.6523 0.0354 -2.4423 20 6 1.9963 -0.4131 -3.6660 21 8 2.6263 -1.4431 -3.7793 22 6 1.5980 0.3656 -4.8932 23 1 0.5142 0.4664 -4.9500 24 6 2.2801 1.7562 -4.9064 25 6 2.3017 2.1506 -6.3997 26 1 1.7302 3.0317 -6.6914 27 6 3.4868 1.6969 -7.2544 28 6 2.2195 0.8412 -7.2037 29 1 1.5876 0.7577 -8.0878 30 6 2.1548 -0.3052 -6.1735 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 3.1263 -0.7996 1.2056 35 1 1.6053 -1.7199 1.2951 36 1 1.1452 0.8571 2.3519 37 1 2.0313 1.3636 4.8474 38 1 0.5110 0.4423 4.9371 39 1 1.5877 0.9565 10.8243 40 1 3.1263 -0.7994 -1.2056 41 1 1.6053 -1.7198 -1.2952 42 1 1.1488 0.8595 -2.3518 43 1 1.6970 2.4726 -4.3277 44 1 3.2958 1.6866 -4.5170 45 1 4.3679 1.3218 -6.7335 46 1 3.6843 2.2488 -8.1734 47 1 3.1502 -0.7099 -5.9901 48 1 1.4805 -1.0895 -6.5174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001746573006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:42 Heat of formation + Delta-G solvation = -68.864317 kcal Electronic energy + Delta-G solvation = -25867.466396 eV Core-core repulsion = 22048.437733 eV Total energy + Delta-G solvation = -3819.028663 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.86666 -39.53779 -38.96523 -37.12366 -34.64249 -32.87032 -32.45227 -31.97740 -29.53333 -28.79002 -27.34919 -25.94776 -25.53711 -23.82374 -21.53515 -21.06388 -20.53351 -20.31560 -20.07174 -17.93296 -17.41824 -17.01656 -16.67195 -16.37528 -16.04888 -15.55628 -15.45198 -14.96723 -14.78338 -14.54096 -13.93038 -13.79181 -13.74959 -13.60599 -13.55974 -13.26956 -13.05975 -12.88033 -12.79905 -12.13152 -12.06294 -11.87657 -11.79107 -11.60435 -11.56147 -11.46440 -11.30498 -11.27510 -11.01689 -10.62514 -10.60112 -10.34977 -10.02975 -9.86855 -9.56651 -9.49004 -9.04822 -8.99156 -8.51628 -6.93414 -6.30335 -4.02239 2.22466 2.60427 2.81049 2.94748 3.08123 3.30520 3.33987 3.49991 3.63986 3.86344 4.09740 4.23323 4.31574 4.33191 4.37356 4.45577 4.52318 4.62087 4.65438 4.72883 4.82039 4.92370 4.97337 5.00984 5.08890 5.16212 5.20083 5.26091 5.26985 5.30099 5.36808 5.43580 5.50188 5.57133 5.59179 5.63522 5.68375 5.74025 5.79811 5.82686 5.85967 5.98375 6.00800 6.46762 7.04425 7.55506 7.81121 7.92656 8.39857 8.45633 9.15961 10.78847 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035687 B = 0.001474 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.421230 B =18986.987519 C =19244.307362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.129 3.871 5 N -0.736 5.736 6 C 0.530 3.470 7 O -0.518 6.518 8 C -0.124 4.124 9 S -0.141 6.141 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.125 3.875 19 N -0.728 5.728 20 C 0.519 3.481 21 O -0.536 6.536 22 C -0.114 4.114 23 H 0.104 0.896 24 C -0.085 4.085 25 C -0.169 4.169 26 H 0.113 0.887 27 C -0.151 4.151 28 C -0.167 4.167 29 H 0.112 0.888 30 C -0.077 4.077 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.399 0.601 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.401 0.599 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.589 3.902 -35.075 35.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 H 0.103 0.897 4 C 0.004 3.996 5 N -0.391 5.391 6 C 0.316 3.684 7 O -0.392 6.392 8 C -0.275 4.275 9 S 0.085 5.915 10 C -0.670 4.670 11 H 0.106 0.894 12 C -0.112 4.112 13 N -0.517 5.517 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C 0.001 3.999 19 N -0.380 5.380 20 C 0.306 3.694 21 O -0.412 6.412 22 C -0.135 4.135 23 H 0.122 0.878 24 C -0.123 4.123 25 C -0.187 4.187 26 H 0.131 0.869 27 C -0.187 4.187 28 C -0.185 4.185 29 H 0.130 0.870 30 C -0.115 4.115 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.235 0.765 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.100 0.900 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.098 1.447 -34.747 34.794 hybrid contribution -1.002 1.624 0.360 1.942 sum -2.100 3.071 -34.387 34.588 Atomic orbital electron populations 1.21898 0.93954 1.02906 1.02026 1.21595 0.97147 1.00753 0.93889 0.89664 1.21179 1.00331 0.95400 0.82703 1.45925 1.59418 1.28316 1.05420 1.20284 0.78777 0.85476 0.83867 1.90710 1.38475 1.23845 1.86207 1.23276 1.05068 1.02959 0.96175 1.84813 1.74653 1.35396 0.96659 1.22316 1.41640 1.11076 0.91955 0.89399 1.24707 0.94586 0.96707 0.95248 1.69940 1.44437 1.36556 1.00747 0.86737 0.81002 0.84356 0.79772 1.19195 1.19918 1.15923 1.21304 1.00544 0.95419 0.82624 1.46007 1.58266 1.27899 1.05819 1.20519 0.79063 0.85480 0.84387 1.90728 1.39474 1.24393 1.86625 1.22520 1.02215 0.95613 0.93174 0.87754 1.21948 1.01157 0.94140 0.95029 1.23219 1.03895 0.98856 0.92689 0.86921 1.23075 0.92370 1.02029 1.01268 1.23265 1.02216 0.92372 1.00625 0.86992 1.21788 1.02635 0.96013 0.91038 0.91833 0.92495 0.91911 0.91192 0.91132 0.76680 0.88507 0.88472 0.91934 0.90910 0.90841 0.76486 0.90383 0.90809 0.88805 0.88245 0.89965 0.90657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.94 37.16 0.33 -0.51 16 2 C -0.11 -0.71 2.46 -90.62 -0.22 -0.94 16 3 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 4 C 0.13 1.27 5.06 -4.04 -0.02 1.25 16 5 N -0.74 -8.49 5.29 -60.29 -0.32 -8.81 16 6 C 0.53 9.07 7.85 -10.98 -0.09 8.99 16 7 O -0.52 -11.02 15.86 5.56 0.09 -10.93 16 8 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 9 S -0.14 -3.56 18.55 -107.50 -1.99 -5.55 16 10 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 11 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 12 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 13 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 14 Si 0.86 21.72 27.74 -169.99 -4.72 17.00 16 15 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 18 C 0.13 0.90 5.06 -4.04 -0.02 0.88 16 19 N -0.73 -4.37 5.26 -60.29 -0.32 -4.68 16 20 C 0.52 4.26 7.14 -10.98 -0.08 4.18 16 21 O -0.54 -6.74 15.75 5.56 0.09 -6.65 16 22 C -0.11 -0.63 3.28 -89.78 -0.29 -0.93 16 23 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 24 C -0.08 -0.39 6.07 -24.96 -0.15 -0.54 16 25 C -0.17 -0.79 6.93 -89.40 -0.62 -1.41 16 26 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 27 C -0.15 -0.75 10.08 -26.74 -0.27 -1.02 16 28 C -0.17 -0.87 6.94 -89.50 -0.62 -1.49 16 29 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 30 C -0.08 -0.50 5.68 -25.07 -0.14 -0.64 16 31 H 0.06 0.36 7.18 -51.93 -0.37 -0.01 16 32 H 0.06 0.23 7.18 -51.93 -0.37 -0.14 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.40 3.41 7.65 -40.82 -0.31 3.10 16 37 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 38 H 0.10 1.68 8.14 -51.92 -0.42 1.26 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.40 1.36 7.66 -40.82 -0.31 1.05 16 43 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 44 H 0.07 0.42 8.04 -51.93 -0.42 0.00 16 45 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.69 7.48 -51.93 -0.39 0.30 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 404.21 15.07 6.09 6.09 Total: -1.00 -36.08 404.21 -10.16 -46.24 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.09 Total: -0.86 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.76 Total: -6.21 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.14 Total: -39.13 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.18 Total: -17.58 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.00 kcal Atomic # 16 Polarization: -3.56 SS G_CDS: -1.99 Total: -5.55 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.08 -10.16 -46.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746573006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.625 kcal (2) G-P(sol) polarization free energy of solvation -36.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds