Wall clock time and date at job start Sat Apr 11 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46895 * 2 1 4 4 C 1.53002 * 109.46855 * 120.00180 * 2 1 3 5 5 N 1.46494 * 109.47001 * 294.99674 * 4 2 1 6 6 C 1.34784 * 119.99635 * 180.02562 * 5 4 2 7 7 O 1.21279 * 119.99925 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99961 * 180.02562 * 6 5 4 9 9 S 1.80996 * 109.47240 * 179.97438 * 8 6 5 10 10 C 1.76200 * 100.00090 * 179.97438 * 9 8 6 11 11 H 1.07999 * 120.00086 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00048 * 179.97438 * 10 9 8 13 13 N 1.31631 * 119.99877 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99940 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47274 * 90.00007 * 14 12 10 16 16 H 1.48504 * 109.47283 * 209.99820 * 14 12 10 17 17 H 1.48499 * 109.47131 * 329.99824 * 14 12 10 18 18 C 1.53001 * 109.46907 * 240.00042 * 2 1 3 19 19 N 1.46499 * 109.46863 * 64.99833 * 18 2 1 20 20 C 1.34782 * 119.99783 * 179.97438 * 19 18 2 21 21 O 1.21277 * 120.00058 * 0.02562 * 20 19 18 22 22 C 1.50701 * 119.99886 * 180.02562 * 20 19 18 23 23 H 1.09002 * 110.67078 * 300.70282 * 22 20 19 24 24 C 1.54895 * 110.75713 * 63.93824 * 22 20 19 25 25 C 1.54466 * 104.09944 * 156.10517 * 24 22 20 26 26 H 1.09004 * 117.24407 * 116.56250 * 25 24 22 27 27 C 1.52991 * 118.37070 * 272.42250 * 25 24 22 28 28 C 1.53000 * 60.37835 * 93.63444 * 27 25 24 29 29 H 1.08994 * 119.75438 * 111.12245 * 28 27 25 30 30 C 1.54269 * 118.19621 * 266.38507 * 28 27 25 31 31 H 1.09006 * 109.47071 * 299.99600 * 1 2 3 32 32 H 1.08998 * 109.47147 * 59.99641 * 1 2 3 33 33 H 1.09000 * 109.47591 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46767 * 174.99740 * 4 2 1 35 35 H 1.09002 * 109.47113 * 55.00080 * 4 2 1 36 36 H 0.96995 * 120.00292 * 0.27801 * 5 4 2 37 37 H 1.09004 * 109.46932 * 300.00223 * 8 6 5 38 38 H 1.08997 * 109.47392 * 59.99562 * 8 6 5 39 39 H 0.97005 * 119.99703 * 180.02562 * 13 12 10 40 40 H 1.08998 * 109.46940 * 184.99754 * 18 2 1 41 41 H 1.09002 * 109.47108 * 305.00068 * 18 2 1 42 42 H 0.97003 * 120.00716 * 0.02562 * 19 18 2 43 43 H 1.09005 * 110.48472 * 274.93715 * 24 22 20 44 44 H 1.08998 * 110.48714 * 37.57555 * 24 22 20 45 45 H 1.09004 * 117.46441 * 346.03601 * 27 25 24 46 46 H 1.09001 * 117.46429 * 201.23139 * 27 25 24 47 47 H 1.09004 * 110.48282 * 329.10582 * 30 28 27 48 48 H 1.09002 * 110.48396 * 206.46800 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6524 0.0353 2.4423 6 6 1.9964 -0.4132 3.6659 7 8 2.6264 -1.4434 3.7791 8 6 1.5973 0.3647 4.8933 9 16 2.2007 -0.4885 6.3711 10 6 1.6114 0.6070 7.6190 11 1 1.0587 1.4928 7.3429 12 6 1.8566 0.3311 8.9570 13 7 1.4159 1.1492 9.8892 14 14 2.8120 -1.2014 9.4347 15 1 4.2615 -0.8835 9.4914 16 1 2.3564 -1.6736 10.7669 17 1 2.5777 -2.2654 8.4256 18 6 2.0400 -0.7213 -1.2493 19 7 1.6523 0.0354 -2.4423 20 6 1.9963 -0.4131 -3.6660 21 8 2.6263 -1.4431 -3.7793 22 6 1.5980 0.3656 -4.8932 23 1 0.5142 0.4664 -4.9500 24 6 2.2801 1.7562 -4.9064 25 6 2.3017 2.1506 -6.3997 26 1 1.7302 3.0317 -6.6914 27 6 3.4868 1.6969 -7.2544 28 6 2.2195 0.8412 -7.2037 29 1 1.5876 0.7577 -8.0878 30 6 2.1548 -0.3052 -6.1735 31 1 -0.3633 0.5138 0.8901 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 3.1263 -0.7996 1.2056 35 1 1.6053 -1.7199 1.2951 36 1 1.1452 0.8571 2.3519 37 1 2.0313 1.3636 4.8474 38 1 0.5110 0.4423 4.9371 39 1 1.5877 0.9565 10.8243 40 1 3.1263 -0.7994 -1.2056 41 1 1.6053 -1.7198 -1.2952 42 1 1.1488 0.8595 -2.3518 43 1 1.6970 2.4726 -4.3277 44 1 3.2958 1.6866 -4.5170 45 1 4.3679 1.3218 -6.7335 46 1 3.6843 2.2488 -8.1734 47 1 3.1502 -0.7099 -5.9901 48 1 1.4805 -1.0895 -6.5174 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746573006.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:41 Heat of formation + Delta-G solvation = -93.773205 kcal Electronic energy + Delta-G solvation = -25868.546526 eV Core-core repulsion = 22048.437733 eV Total energy + Delta-G solvation = -3820.108793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.42704 -40.72454 -39.56968 -37.95005 -35.57985 -34.66818 -33.63709 -32.59809 -30.86885 -29.21439 -27.94984 -27.83085 -26.67222 -24.38315 -22.02815 -21.82929 -21.62640 -20.83819 -20.56198 -19.84570 -18.15726 -17.74457 -17.61773 -17.27558 -17.09198 -16.85275 -16.55188 -16.40472 -15.68109 -15.58270 -15.13796 -14.89785 -14.73136 -14.48439 -14.19554 -14.06277 -14.04190 -13.90538 -13.57167 -13.35273 -13.33956 -13.00995 -12.67798 -12.57843 -12.32620 -12.23324 -12.15687 -12.07996 -11.98824 -11.86724 -11.86052 -11.16894 -11.06165 -10.97995 -10.88198 -10.52893 -10.52267 -10.16142 -10.10606 -8.99200 -8.51367 -6.21951 0.99577 1.31471 1.47080 1.55677 1.57265 1.59565 2.02831 2.24889 2.36676 2.68676 2.73258 2.87187 3.42093 3.68140 3.71925 3.77974 3.83704 3.85205 3.94246 4.09918 4.22663 4.24655 4.25722 4.39951 4.43462 4.48420 4.49157 4.52068 4.63256 4.72538 4.76218 4.77020 4.87992 4.91712 4.96794 5.02677 5.12742 5.16530 5.18931 5.31235 5.32993 5.40765 5.43405 5.45675 5.71061 6.11788 6.46928 6.53597 6.94280 7.20489 7.24048 8.60878 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.035687 B = 0.001474 C = 0.001455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.421230 B =18986.987519 C =19244.307362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 H 0.108 0.892 4 C 0.126 3.874 5 N -0.707 5.707 6 C 0.534 3.466 7 O -0.565 6.565 8 C -0.110 4.110 9 S -0.180 6.180 10 C -0.528 4.528 11 H 0.064 0.936 12 C 0.047 3.953 13 N -0.916 5.916 14 Si 0.913 3.087 15 H -0.263 1.263 16 H -0.259 1.259 17 H -0.238 1.238 18 C 0.128 3.872 19 N -0.711 5.711 20 C 0.516 3.484 21 O -0.588 6.588 22 C -0.106 4.106 23 H 0.130 0.870 24 C -0.083 4.083 25 C -0.161 4.161 26 H 0.130 0.870 27 C -0.160 4.160 28 C -0.171 4.171 29 H 0.123 0.877 30 C -0.082 4.082 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.418 0.582 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.277 0.723 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.417 0.583 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.111 0.889 47 H 0.054 0.946 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 5.416 -36.801 37.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 H 0.126 0.874 4 C 0.002 3.998 5 N -0.361 5.361 6 C 0.319 3.681 7 O -0.444 6.444 8 C -0.261 4.261 9 S 0.046 5.954 10 C -0.676 4.676 11 H 0.082 0.918 12 C -0.158 4.158 13 N -0.554 5.554 14 Si 0.735 3.265 15 H -0.188 1.188 16 H -0.184 1.184 17 H -0.162 1.162 18 C 0.003 3.997 19 N -0.364 5.364 20 C 0.303 3.697 21 O -0.468 6.468 22 C -0.127 4.127 23 H 0.147 0.853 24 C -0.120 4.120 25 C -0.178 4.178 26 H 0.148 0.852 27 C -0.197 4.197 28 C -0.189 4.189 29 H 0.141 0.859 30 C -0.120 4.120 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.256 0.744 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.255 0.745 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.099 0.901 46 H 0.129 0.871 47 H 0.073 0.927 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.283 3.038 -36.498 36.696 hybrid contribution -0.683 1.213 0.746 1.579 sum -2.966 4.251 -35.752 36.126 Atomic orbital electron populations 1.21922 0.92853 1.02631 1.03389 1.21425 0.97767 1.01026 0.91162 0.87407 1.21294 0.99900 0.95339 0.83300 1.45640 1.57823 1.28575 1.04099 1.19980 0.78573 0.84692 0.84851 1.90703 1.40951 1.25824 1.86901 1.23268 1.06068 1.03094 0.93703 1.84777 1.75281 1.36143 0.99180 1.22462 1.41042 1.10826 0.93259 0.91781 1.25528 0.95500 0.99403 0.95381 1.70014 1.45775 1.38284 1.01357 0.85890 0.79805 0.80961 0.79859 1.18771 1.18358 1.16189 1.21165 0.99677 0.95278 0.83572 1.45844 1.57575 1.28123 1.04819 1.21039 0.78149 0.84927 0.85542 1.90711 1.41895 1.26793 1.87357 1.22535 1.03576 0.95519 0.91070 0.85261 1.21978 1.00686 0.93910 0.95474 1.23336 1.03234 0.98846 0.92431 0.85230 1.23137 0.92104 1.02419 1.02018 1.23252 1.02672 0.92110 1.00873 0.85942 1.21770 1.01119 0.96719 0.92375 0.91390 0.90232 0.93080 0.92176 0.92248 0.74404 0.86652 0.86613 0.91390 0.92347 0.92207 0.74465 0.87714 0.92284 0.90070 0.87052 0.92749 0.90879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.94 71.98 0.64 -0.53 16 2 C -0.09 -0.92 2.46 -10.79 -0.03 -0.95 16 3 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 4 C 0.13 2.29 5.06 86.38 0.44 2.73 16 5 N -0.71 -14.55 5.29 -463.05 -2.45 -17.00 16 6 C 0.53 17.44 7.85 87.66 0.69 18.12 16 7 O -0.57 -23.83 15.86 -3.03 -0.05 -23.88 16 8 C -0.11 -3.97 6.16 71.24 0.44 -3.53 16 9 S -0.18 -9.01 18.55 -56.49 -1.05 -10.05 16 10 C -0.53 -30.39 10.04 67.95 0.68 -29.71 16 11 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 12 C 0.05 2.76 5.50 84.86 0.47 3.23 16 13 N -0.92 -55.35 13.97 21.65 0.30 -55.05 16 14 Si 0.91 44.87 27.74 68.60 1.90 46.77 16 15 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 16 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.24 -11.72 6.74 99.48 0.67 -11.05 16 18 C 0.13 1.69 5.06 86.38 0.44 2.13 16 19 N -0.71 -7.07 5.26 -463.05 -2.44 -9.50 16 20 C 0.52 8.04 7.14 87.66 0.63 8.67 16 21 O -0.59 -15.28 15.75 -3.02 -0.05 -15.33 16 22 C -0.11 -1.00 3.28 -10.25 -0.03 -1.03 16 23 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 24 C -0.08 -0.56 6.07 31.74 0.19 -0.36 16 25 C -0.16 -1.12 6.93 -10.01 -0.07 -1.19 16 26 H 0.13 0.51 8.14 -2.38 -0.02 0.49 16 27 C -0.16 -1.45 10.08 30.59 0.31 -1.14 16 28 C -0.17 -1.57 6.94 -10.07 -0.07 -1.64 16 29 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 30 C -0.08 -1.06 5.68 31.67 0.18 -0.88 16 31 H 0.07 0.51 7.18 -2.38 -0.02 0.49 16 32 H 0.08 0.30 7.18 -2.39 -0.02 0.28 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.42 5.57 7.65 -92.71 -0.71 4.86 16 37 H 0.12 3.74 8.14 -2.39 -0.02 3.72 16 38 H 0.12 3.75 8.14 -2.40 -0.02 3.73 16 39 H 0.28 15.47 8.31 -92.70 -0.77 14.70 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.42 1.28 7.66 -92.71 -0.71 0.57 16 43 H 0.10 0.17 8.14 -2.38 -0.02 0.15 16 44 H 0.06 0.59 8.04 -2.39 -0.02 0.57 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 1.00 7.48 -2.39 -0.02 0.98 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -81.01 404.21 0.59 -80.43 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -0.49 Total: 9.71 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 4.90 Total: -6.09 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -4.58 Total: -81.55 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -0.10 Total: -39.21 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.90 Total: 46.77 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.05 kcal Total: -81.01 0.59 -80.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746573006.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.347 kcal (2) G-P(sol) polarization free energy of solvation -81.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds