Wall clock time and date at job start Sat Apr 11 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36931 * 120.00071 * 2 1 4 4 H 1.08000 * 120.00490 * 201.07193 * 3 2 1 5 5 C 1.38811 * 120.00032 * 21.06970 * 3 2 1 6 6 N 1.31622 * 120.00118 * 13.21602 * 5 3 2 7 7 Si 1.86799 * 120.00153 * 193.21636 * 5 3 2 8 8 H 1.48500 * 109.47419 * 89.99929 * 7 5 3 9 9 H 1.48500 * 109.47293 * 210.00103 * 7 5 3 10 10 H 1.48496 * 109.47213 * 329.99983 * 7 5 3 11 11 C 1.46504 * 119.99903 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46833 * 90.00205 * 11 2 1 13 13 C 1.53045 * 109.46036 * 175.00065 * 12 11 2 14 14 C 1.53190 * 109.31176 * 181.36999 * 13 12 11 15 15 N 1.46924 * 108.89441 * 305.29100 * 14 13 12 16 16 C 1.34779 * 120.62961 * 233.67825 * 15 14 13 17 17 O 1.21277 * 120.00153 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99735 * 180.02562 * 16 15 14 19 19 C 1.52999 * 109.47093 * 180.02562 * 18 16 15 20 20 F 1.39897 * 109.46888 * 299.99724 * 19 18 16 21 21 F 1.39900 * 109.47363 * 59.99780 * 19 18 16 22 22 C 1.52998 * 109.47434 * 179.97438 * 19 18 16 23 23 F 1.39902 * 109.47310 * 179.97438 * 22 19 18 24 24 F 1.39897 * 109.47112 * 299.99899 * 22 19 18 25 25 C 1.47208 * 118.55641 * 53.54039 * 15 14 13 26 26 C 1.53049 * 109.44816 * 295.05781 * 12 11 2 27 27 H 1.08997 * 109.46946 * 275.21759 * 1 2 3 28 28 H 1.08999 * 109.47300 * 35.21708 * 1 2 3 29 29 H 1.09004 * 109.47004 * 155.22430 * 1 2 3 30 30 H 0.96997 * 120.00049 * 179.97438 * 6 5 3 31 31 H 1.08994 * 109.47351 * 329.99877 * 11 2 1 32 32 H 1.09004 * 109.47006 * 209.99692 * 11 2 1 33 33 H 1.08993 * 109.46418 * 55.02605 * 12 11 2 34 34 H 1.09001 * 109.49532 * 61.41385 * 13 12 11 35 35 H 1.09003 * 109.51878 * 301.34015 * 13 12 11 36 36 H 1.08995 * 109.58571 * 65.15335 * 14 13 12 37 37 H 1.09004 * 109.58435 * 185.43234 * 14 13 12 38 38 H 1.09006 * 109.47185 * 299.99364 * 18 16 15 39 39 H 1.08997 * 109.47714 * 59.99867 * 18 16 15 40 40 H 1.09005 * 109.47015 * 60.00043 * 22 19 18 41 41 H 1.09001 * 109.53476 * 186.67529 * 25 15 14 42 42 H 1.09007 * 109.67214 * 66.36580 * 25 15 14 43 43 H 1.09002 * 109.49398 * 298.57666 * 26 12 11 44 44 H 1.09000 * 109.49422 * 58.67293 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1755 1.2172 -0.3363 5 6 1.5252 2.3478 0.4322 6 7 0.3814 2.2785 1.0797 7 14 2.3082 4.0099 0.0948 8 1 1.8234 4.5300 -1.2090 9 1 1.9386 4.9596 1.1749 10 1 3.7851 3.8615 0.0502 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.3240 -2.9691 -1.4428 14 6 3.6056 -3.3891 -2.8889 15 7 2.3275 -3.5433 -3.5969 16 6 2.0355 -4.6883 -4.2453 17 8 2.8313 -5.6034 -4.2483 18 6 0.7205 -4.8308 -4.9675 19 6 0.6410 -6.2154 -5.6135 20 9 1.6920 -6.3660 -6.5245 21 9 0.7380 -7.1986 -4.6230 22 6 -0.6943 -6.3605 -6.3462 23 9 -0.7667 -7.6264 -6.9374 24 9 -1.7450 -6.2101 -5.4349 25 6 1.3737 -2.4222 -3.5796 26 6 1.1171 -2.0130 -2.1258 27 1 -0.3633 0.0935 1.0234 28 1 -0.3634 0.8396 -0.5926 29 1 -0.3633 -0.9331 -0.4307 30 1 -0.0547 3.0904 1.3820 31 1 1.6085 -2.0282 0.5147 32 1 3.1500 -1.1382 0.5143 33 1 2.9646 -0.9141 -1.9808 34 1 2.8018 -3.7738 -0.9252 35 1 4.2655 -2.7604 -0.9346 36 1 4.2061 -2.6243 -3.3811 37 1 4.1439 -4.3369 -2.8958 38 1 -0.0984 -4.7140 -4.2576 39 1 0.6447 -4.0646 -5.7390 40 1 -0.7703 -5.5945 -7.1180 41 1 0.4371 -2.7333 -4.0424 42 1 1.7900 -1.5777 -4.1289 43 1 0.6158 -2.8267 -1.6018 44 1 0.4879 -1.1232 -2.1040 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753365334.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:53 Heat of formation + Delta-G solvation = -233.071844 kcal Electronic energy + Delta-G solvation = -31019.947242 eV Core-core repulsion = 26085.728090 eV Total energy + Delta-G solvation = -4934.219152 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.86253 -49.63124 -48.50875 -48.06531 -41.26542 -39.06160 -37.12190 -34.71208 -33.91374 -32.53758 -31.87463 -29.26603 -28.20255 -27.70766 -25.09904 -24.27433 -23.43147 -22.47122 -21.42480 -20.19667 -19.52959 -19.39437 -18.68699 -18.55728 -17.87967 -17.76624 -17.31676 -16.89974 -16.56332 -16.40716 -15.60101 -15.55955 -15.50576 -15.20273 -15.13790 -15.07523 -14.86496 -14.66887 -14.63679 -14.58501 -14.26898 -14.08072 -13.83437 -13.63742 -13.44540 -13.24337 -13.13798 -12.83919 -12.76645 -12.47445 -12.37172 -12.15466 -11.93746 -11.89950 -11.83942 -11.82341 -11.31088 -11.21838 -10.94332 -10.57025 -9.72177 -8.70052 -7.77138 -5.23960 1.44833 1.48867 1.49754 1.51468 1.58061 1.95918 2.50567 2.54434 2.79044 2.85229 3.00485 3.35009 3.45128 3.69427 3.71857 3.76275 3.87378 4.03264 4.14846 4.18993 4.23458 4.29062 4.41307 4.50737 4.61966 4.77751 4.82240 4.86326 4.91895 5.02846 5.10656 5.16415 5.19841 5.31391 5.42768 5.61219 5.64464 5.68931 5.80601 6.30418 6.37679 6.99411 7.21417 7.95217 8.37359 9.25241 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.021273 B = 0.002448 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.927900 B =11433.110777 C =11984.307698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.616 5.616 3 C -0.252 4.252 4 H 0.070 0.930 5 C -0.057 4.057 6 N -0.942 5.942 7 Si 0.964 3.036 8 H -0.285 1.285 9 H -0.300 1.300 10 H -0.271 1.271 11 C 0.154 3.846 12 C -0.096 4.096 13 C -0.117 4.117 14 C 0.115 3.885 15 N -0.602 5.602 16 C 0.512 3.488 17 O -0.577 6.577 18 C -0.189 4.189 19 C 0.255 3.745 20 F -0.183 7.183 21 F -0.198 7.198 22 C 0.241 3.759 23 F -0.200 7.200 24 F -0.185 7.185 25 C 0.107 3.893 26 C -0.122 4.122 27 H -0.008 1.008 28 H 0.017 0.983 29 H 0.040 0.960 30 H 0.246 0.754 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.157 0.843 39 H 0.179 0.821 40 H 0.203 0.797 41 H 0.118 0.882 42 H 0.082 0.918 43 H 0.061 0.939 44 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.603 -14.230 -17.646 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.339 5.339 3 C -0.382 4.382 4 H 0.088 0.912 5 C -0.251 4.251 6 N -0.589 5.589 7 Si 0.793 3.207 8 H -0.212 1.212 9 H -0.227 1.227 10 H -0.196 1.196 11 C 0.028 3.972 12 C -0.117 4.117 13 C -0.156 4.156 14 C -0.007 4.007 15 N -0.334 5.334 16 C 0.301 3.699 17 O -0.457 6.457 18 C -0.228 4.228 19 C 0.217 3.783 20 F -0.164 7.164 21 F -0.179 7.179 22 C 0.187 3.813 23 F -0.181 7.181 24 F -0.166 7.166 25 C -0.014 4.014 26 C -0.160 4.160 27 H 0.010 0.990 28 H 0.035 0.965 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.175 0.825 39 H 0.196 0.804 40 H 0.220 0.780 41 H 0.136 0.864 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.274 -14.638 -17.554 22.969 hybrid contribution 0.450 0.824 0.640 1.136 sum -1.824 -13.814 -16.914 21.914 Atomic orbital electron populations 1.20592 0.82707 0.96181 0.97128 1.44118 1.02089 1.01471 1.86227 1.19497 0.97250 0.86406 1.35088 0.91228 1.25700 0.98585 1.01542 0.99275 1.70252 1.19741 1.27004 1.41951 0.85302 0.78310 0.80236 0.76821 1.21169 1.22718 1.19560 1.20909 0.95050 0.86599 0.94636 1.21597 0.96093 0.96127 0.97882 1.21829 1.00643 0.97284 0.95852 1.21569 0.84979 1.02069 0.92081 1.48234 1.19288 1.14724 1.51127 1.20484 0.88434 0.81762 0.79258 1.90771 1.51643 1.40355 1.62891 1.23014 0.98957 0.95664 1.05171 1.22221 0.86653 0.88996 0.80447 1.93086 1.59635 1.96478 1.67194 1.93075 1.96675 1.65137 1.63057 1.23288 0.82422 0.86111 0.89524 1.93046 1.96391 1.44480 1.84199 1.93069 1.58437 1.95670 1.69401 1.22090 0.93386 0.88559 0.97366 1.21916 0.97485 1.01396 0.95244 0.98958 0.96461 0.94176 0.94506 0.94231 0.94589 0.92330 0.92250 0.90294 0.90462 0.90387 0.82500 0.80370 0.78049 0.86442 0.89935 0.92072 0.90725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.23 7.86 127.77 1.00 9.23 16 2 N -0.62 -28.74 2.75 -726.93 -2.00 -30.73 16 3 C -0.25 -13.16 9.67 84.03 0.81 -12.35 16 4 H 0.07 3.54 7.86 -2.91 -0.02 3.52 16 5 C -0.06 -3.07 5.10 84.86 0.43 -2.64 16 6 N -0.94 -54.56 10.61 21.65 0.23 -54.33 16 7 Si 0.96 43.81 29.57 68.60 2.03 45.83 16 8 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 9 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 11 C 0.15 5.71 5.14 86.38 0.44 6.15 16 12 C -0.10 -2.74 2.36 -10.76 -0.03 -2.77 16 13 C -0.12 -2.83 5.36 30.67 0.16 -2.66 16 14 C 0.12 2.60 6.42 86.36 0.55 3.16 16 15 N -0.60 -12.23 2.98 -818.19 -2.44 -14.67 16 16 C 0.51 11.23 7.47 87.66 0.65 11.88 16 17 O -0.58 -18.13 14.25 -3.02 -0.04 -18.17 16 18 C -0.19 -2.21 3.53 29.85 0.11 -2.11 16 19 C 0.25 4.30 1.40 30.59 0.04 4.34 16 20 F -0.18 -3.91 16.12 44.97 0.73 -3.18 16 21 F -0.20 -5.11 16.11 44.97 0.72 -4.39 16 22 C 0.24 2.45 4.83 71.98 0.35 2.80 16 23 F -0.20 -3.35 17.30 44.97 0.78 -2.57 16 24 F -0.18 -2.32 16.80 44.97 0.76 -1.56 16 25 C 0.11 1.77 6.35 86.31 0.55 2.31 16 26 C -0.12 -2.93 4.40 30.67 0.14 -2.80 16 27 H -0.01 -0.42 7.38 -2.39 -0.02 -0.43 16 28 H 0.02 0.85 7.22 -2.39 -0.02 0.83 16 29 H 0.04 1.50 6.20 -2.38 -0.01 1.48 16 30 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.04 1.41 8.07 -2.39 -0.02 1.39 16 32 H 0.04 1.39 8.04 -2.38 -0.02 1.37 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.08 1.97 7.00 -2.39 -0.02 1.95 16 38 H 0.16 1.21 7.35 -2.38 -0.02 1.19 16 39 H 0.18 0.37 7.96 -2.39 -0.02 0.35 16 40 H 0.20 -0.28 8.14 -2.38 -0.02 -0.30 16 41 H 0.12 1.03 5.97 -2.39 -0.01 1.01 16 42 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.07 2.10 5.87 -2.39 -0.01 2.09 16 Total: -1.00 -75.40 361.94 7.00 -68.40 By element: Atomic # 1 Polarization: -0.21 SS G_CDS: 1.02 Total: 0.81 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 5.22 Total: 14.56 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -4.21 Total: -99.73 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.04 Total: -18.17 kcal Atomic # 9 Polarization: -14.68 SS G_CDS: 2.98 Total: -11.70 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.83 kcal Total: -75.40 7.00 -68.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753365334.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.670 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds