Wall clock time and date at job start Sat Apr 11 2020 06:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47089 * 2 1 4 4 C 1.53000 * 109.46922 * 119.99767 * 2 1 3 5 5 N 1.46498 * 109.46946 * 175.00269 * 4 2 1 6 6 C 1.34775 * 119.99706 * 179.97438 * 5 4 2 7 7 O 1.21284 * 120.00192 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00124 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.63948 * 59.99949 * 8 6 5 10 10 C 1.53028 * 109.64026 * 299.58216 * 8 6 5 11 11 C 1.50069 * 110.14600 * 190.87774 * 10 8 6 12 12 C 1.29440 * 124.07707 * 17.12628 * 11 10 8 13 13 C 1.50067 * 124.07599 * 359.56147 * 12 11 10 14 14 C 1.52949 * 110.29978 * 16.94246 * 13 12 11 15 15 N 1.46499 * 109.47264 * 240.00022 * 2 1 3 16 16 C 1.46506 * 119.99537 * 299.99724 * 15 2 1 17 17 C 1.34777 * 120.00199 * 120.00374 * 15 2 1 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 15 2 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 15 2 20 20 S 1.80999 * 109.46903 * 179.72354 * 19 17 15 21 21 C 1.76200 * 99.99730 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00351 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00095 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99941 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47506 * 89.99666 * 25 23 21 27 27 H 1.48498 * 109.47217 * 210.00061 * 25 23 21 28 28 H 1.48502 * 109.46767 * 329.99807 * 25 23 21 29 29 H 1.08998 * 109.47544 * 300.00530 * 1 2 3 30 30 H 1.09007 * 109.46721 * 60.00439 * 1 2 3 31 31 H 1.08995 * 109.47131 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46979 * 294.99999 * 4 2 1 33 33 H 1.09001 * 109.47089 * 54.99824 * 4 2 1 34 34 H 0.96994 * 120.00525 * 359.97438 * 5 4 2 35 35 H 1.08993 * 109.35849 * 311.08796 * 10 8 6 36 36 H 1.09004 * 109.35420 * 70.80976 * 10 8 6 37 37 H 1.08002 * 117.95831 * 197.11324 * 11 10 8 38 38 H 1.08003 * 117.96332 * 179.52782 * 12 11 10 39 39 H 1.09002 * 109.36204 * 137.30417 * 13 12 11 40 40 H 1.08997 * 109.36161 * 256.89622 * 13 12 11 41 41 H 1.09004 * 109.80401 * 191.12041 * 14 13 12 42 42 H 1.08998 * 109.44212 * 70.51533 * 14 13 12 43 43 H 1.08998 * 109.46921 * 269.99744 * 16 15 2 44 44 H 1.08994 * 109.46996 * 30.00327 * 16 15 2 45 45 H 1.09001 * 109.46578 * 150.00190 * 16 15 2 46 46 H 1.09004 * 109.46965 * 299.72211 * 19 17 15 47 47 H 1.08994 * 109.46990 * 59.72065 * 19 17 15 48 48 H 0.97002 * 120.00288 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.1729 -1.4281 2.1913 7 8 3.5698 -1.8831 3.1401 8 6 5.6748 -1.5368 2.1308 9 1 6.1127 -0.5397 2.0841 10 6 6.0832 -2.3365 0.8917 11 6 7.5428 -2.6793 0.9556 12 6 8.2529 -2.6291 2.0367 13 6 7.7181 -2.2121 3.3754 14 6 6.1896 -2.2682 3.3770 15 7 2.0184 -0.6906 -1.1961 16 6 1.6644 -2.0932 -1.4279 17 6 2.7933 -0.0356 -2.0833 18 8 3.0859 1.1256 -1.8915 19 6 3.2905 -0.7443 -3.3169 20 16 4.2907 0.3953 -4.3053 21 6 4.7287 -0.6640 -5.6435 22 1 4.3787 -1.6856 -5.6604 23 6 5.5225 -0.1853 -6.6765 24 7 5.9478 1.0603 -6.6567 25 14 5.9863 -1.3080 -8.0956 26 1 4.9623 -1.2019 -9.1658 27 1 7.3096 -0.9037 -8.6346 28 1 6.0556 -2.7112 -7.6143 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2952 34 1 3.9824 -0.4628 0.4317 35 1 5.4980 -3.2549 0.8454 36 1 5.8926 -1.7413 -0.0014 37 1 8.0311 -2.9872 0.0428 38 1 9.2950 -2.9051 1.9713 39 1 8.1058 -2.8810 4.1437 40 1 8.0387 -1.1930 3.5911 41 1 5.8032 -1.7820 4.2728 42 1 5.8647 -3.3083 3.3518 43 1 2.4158 -2.7377 -0.9715 44 1 0.6905 -2.3002 -0.9845 45 1 1.6238 -2.2853 -2.5001 46 1 3.8981 -1.6006 -3.0239 47 1 2.4403 -1.0868 -3.9066 48 1 6.5030 1.3948 -7.3784 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756018332.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:03 Heat of formation + Delta-G solvation = -92.076306 kcal Electronic energy + Delta-G solvation = -27867.215778 eV Core-core repulsion = 24047.180568 eV Total energy + Delta-G solvation = -3820.035210 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.50996 -40.80508 -38.70759 -37.63358 -35.34879 -34.56844 -33.31749 -32.16336 -31.65972 -30.17624 -27.87526 -27.64328 -27.43415 -24.75091 -23.67649 -22.78195 -21.26944 -20.35568 -19.57635 -18.90653 -18.37727 -18.29902 -17.38992 -16.91496 -16.86337 -16.75952 -16.47718 -16.12183 -15.69355 -15.34545 -14.73026 -14.63984 -14.53270 -14.52205 -14.34856 -14.12904 -13.91952 -13.78881 -13.52048 -13.28710 -13.18901 -13.16119 -13.09769 -13.01967 -12.89338 -12.81107 -12.57956 -12.00903 -11.95618 -11.75597 -11.69277 -11.35039 -11.13134 -10.87781 -10.77434 -10.24066 -10.14813 -9.90948 -9.74733 -8.63961 -8.33485 -6.10442 1.26636 1.38334 1.42400 1.46440 1.55262 1.55964 1.56910 2.02154 2.21167 2.28738 3.01039 3.27590 3.52300 3.57835 3.67644 3.79366 3.84138 4.06660 4.17567 4.20130 4.21882 4.25340 4.29648 4.38744 4.43191 4.49919 4.58091 4.60923 4.64563 4.66963 4.68810 4.79150 4.84808 4.90210 5.00444 5.03391 5.03615 5.21532 5.25843 5.30121 5.38090 5.43400 5.57639 5.73845 6.03392 6.20704 6.24211 6.39788 7.08557 7.12584 7.13143 8.75360 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009119 B = 0.003425 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3069.868406 B = 8172.150800 C =10513.977001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 H 0.086 0.914 4 C 0.115 3.885 5 N -0.722 5.722 6 C 0.521 3.479 7 O -0.574 6.574 8 C -0.107 4.107 9 H 0.104 0.896 10 C -0.077 4.077 11 C -0.168 4.168 12 C -0.155 4.155 13 C -0.090 4.090 14 C -0.093 4.093 15 N -0.602 5.602 16 C 0.069 3.931 17 C 0.534 3.466 18 O -0.559 6.559 19 C -0.126 4.126 20 S -0.144 6.144 21 C -0.545 4.545 22 H 0.081 0.919 23 C 0.017 3.983 24 N -0.910 5.910 25 Si 0.993 3.007 26 H -0.269 1.269 27 H -0.279 1.279 28 H -0.258 1.258 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.403 0.597 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.106 0.894 47 H 0.105 0.895 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 -10.006 18.358 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.022 3.978 3 H 0.104 0.896 4 C -0.009 4.009 5 N -0.372 5.372 6 C 0.309 3.691 7 O -0.454 6.454 8 C -0.128 4.128 9 H 0.122 0.878 10 C -0.114 4.114 11 C -0.186 4.186 12 C -0.173 4.173 13 C -0.127 4.127 14 C -0.131 4.131 15 N -0.337 5.337 16 C -0.073 4.073 17 C 0.322 3.678 18 O -0.437 6.437 19 C -0.277 4.277 20 S 0.083 5.917 21 C -0.693 4.693 22 H 0.099 0.901 23 C -0.188 4.188 24 N -0.547 5.547 25 Si 0.815 3.185 26 H -0.195 1.195 27 H -0.204 1.204 28 H -0.182 1.182 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.237 0.763 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.127 0.873 38 H 0.135 0.865 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.118 0.882 45 H 0.096 0.904 46 H 0.124 0.876 47 H 0.123 0.877 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.109 -8.501 19.242 21.648 hybrid contribution 0.320 -1.315 -1.769 2.227 sum -4.789 -9.816 17.473 20.606 Atomic orbital electron populations 1.22026 0.91452 1.04008 1.03454 1.21385 0.96524 0.97199 0.82688 0.89599 1.21780 0.79770 1.01754 0.97587 1.46061 1.08276 1.59280 1.23614 1.20878 0.90487 0.76396 0.81363 1.90659 1.71030 1.49317 1.34381 1.21432 0.90508 1.02352 0.98496 0.87823 1.20341 0.95017 0.99832 0.96232 1.22053 0.95303 1.02273 0.98990 1.22272 1.00279 1.00159 0.94566 1.20509 0.93951 1.02652 0.95597 1.21352 0.95604 1.00288 0.95904 1.47882 1.50196 1.13607 1.21983 1.22038 1.02528 0.79429 1.03266 1.20097 0.77687 0.86168 0.83856 1.90699 1.58312 1.18126 1.76605 1.23388 1.03688 1.03180 0.97405 1.85537 1.63640 1.19226 1.23312 1.23186 1.37598 1.00004 1.08517 0.90080 1.26047 0.94843 0.97042 1.00907 1.70173 1.34281 1.16467 1.33749 0.85027 0.77693 0.78421 0.77323 1.19462 1.20404 1.18195 0.89389 0.92496 0.90061 0.90007 0.90180 0.76251 0.90593 0.90966 0.87308 0.86491 0.89156 0.89940 0.91195 0.92077 0.91923 0.88225 0.90390 0.87565 0.87697 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.17 71.98 0.66 -1.49 16 2 C 0.13 2.50 2.80 44.99 0.13 2.63 16 3 H 0.09 2.19 6.90 -2.38 -0.02 2.17 16 4 C 0.12 2.17 4.97 86.38 0.43 2.60 16 5 N -0.72 -15.90 5.30 -463.06 -2.45 -18.36 16 6 C 0.52 12.49 7.13 87.66 0.63 13.12 16 7 O -0.57 -16.90 15.90 -3.04 -0.05 -16.95 16 8 C -0.11 -2.20 2.57 -11.40 -0.03 -2.23 16 9 H 0.10 2.05 8.13 -2.39 -0.02 2.03 16 10 C -0.08 -1.58 5.28 29.66 0.16 -1.42 16 11 C -0.17 -3.32 9.80 27.04 0.27 -3.06 16 12 C -0.15 -2.67 9.81 27.04 0.27 -2.41 16 13 C -0.09 -1.39 6.11 29.63 0.18 -1.21 16 14 C -0.09 -1.78 4.70 30.71 0.14 -1.64 16 15 N -0.60 -13.81 2.24 -822.58 -1.85 -15.65 16 16 C 0.07 1.12 9.41 127.77 1.20 2.32 16 17 C 0.53 17.98 7.40 87.66 0.65 18.62 16 18 O -0.56 -23.61 15.19 -3.04 -0.05 -23.65 16 19 C -0.13 -4.66 4.71 71.24 0.34 -4.33 16 20 S -0.14 -7.66 20.57 -56.49 -1.16 -8.82 16 21 C -0.55 -30.13 9.50 67.95 0.65 -29.49 16 22 H 0.08 4.17 7.80 -2.91 -0.02 4.14 16 23 C 0.02 0.92 5.49 84.86 0.47 1.38 16 24 N -0.91 -54.68 13.22 21.65 0.29 -54.40 16 25 Si 0.99 42.58 29.55 68.60 2.03 44.61 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 28 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 29 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.08 0.86 6.66 -2.39 -0.02 0.84 16 32 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.39 7.84 -2.39 -0.02 1.37 16 34 H 0.40 9.64 7.57 -92.71 -0.70 8.94 16 35 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 36 H 0.07 1.59 7.92 -2.38 -0.02 1.57 16 37 H 0.11 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.12 1.71 8.06 -2.91 -0.02 1.68 16 39 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.07 1.39 7.91 -2.38 -0.02 1.37 16 42 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.10 1.08 6.43 -2.39 -0.02 1.07 16 45 H 0.08 1.29 6.43 -2.39 -0.02 1.28 16 46 H 0.11 3.56 8.11 -2.39 -0.02 3.55 16 47 H 0.10 3.57 7.40 -2.40 -0.02 3.55 16 48 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -74.63 400.75 3.13 -71.50 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: 0.25 Total: 28.31 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 6.12 Total: -6.59 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -4.01 Total: -88.41 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -0.09 Total: -40.60 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: -7.66 SS G_CDS: -1.16 Total: -8.82 kcal Total: -74.63 3.13 -71.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756018332.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.572 kcal (2) G-P(sol) polarization free energy of solvation -74.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds