Wall clock time and date at job start Sat Apr 11 2020 06:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47047 * 2 1 4 4 C 1.50706 * 109.46902 * 239.99673 * 2 1 3 5 5 O 1.21283 * 120.00003 * 239.99855 * 4 2 1 6 6 N 1.34769 * 119.99945 * 60.00300 * 4 2 1 7 7 C 1.46497 * 120.00274 * 179.97438 * 6 4 2 8 8 H 1.09002 * 112.90477 * 336.24972 * 7 6 4 9 9 C 1.53779 * 113.61581 * 107.50145 * 7 6 4 10 10 C 1.53779 * 87.08402 * 139.98450 * 9 7 6 11 11 H 1.09000 * 113.69407 * 220.01236 * 10 9 7 12 12 N 1.46499 * 113.61746 * 89.11614 * 10 9 7 13 13 C 1.34771 * 119.99903 * 107.50534 * 12 10 9 14 14 O 1.21282 * 120.00369 * 359.97438 * 13 12 10 15 15 C 1.50701 * 119.99769 * 180.02562 * 13 12 10 16 16 S 1.81007 * 109.47136 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99893 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00211 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00018 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00053 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00244 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47102 * 60.00002 * 21 19 17 23 23 H 1.48502 * 109.47013 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47112 * 299.99763 * 21 19 17 25 25 C 1.53784 * 113.61569 * 204.99925 * 7 6 4 26 26 C 1.53002 * 109.46962 * 120.00081 * 2 1 3 27 27 C 1.53777 * 113.61419 * 277.49228 * 26 2 1 28 28 C 1.53781 * 87.08397 * 220.02266 * 27 26 2 29 29 C 1.53777 * 87.07931 * 25.43194 * 28 27 26 30 30 H 1.09002 * 109.46633 * 299.99715 * 1 2 3 31 31 H 1.08995 * 109.47242 * 60.00244 * 1 2 3 32 32 H 1.09005 * 109.47016 * 180.02562 * 1 2 3 33 33 H 0.97009 * 120.00192 * 359.97438 * 6 4 2 34 34 H 1.09006 * 113.61307 * 25.43652 * 9 7 6 35 35 H 1.08999 * 113.69146 * 254.54138 * 9 7 6 36 36 H 0.97001 * 119.99349 * 287.50724 * 12 10 9 37 37 H 1.08997 * 109.47565 * 299.99791 * 15 13 12 38 38 H 1.09002 * 109.47005 * 60.00146 * 15 13 12 39 39 H 0.97003 * 120.00219 * 180.02562 * 20 19 17 40 40 H 1.09004 * 113.61451 * 105.47149 * 25 7 6 41 41 H 1.08994 * 113.61477 * 334.56451 * 25 7 6 42 42 H 1.08997 * 112.85044 * 48.80583 * 26 2 1 43 43 H 1.09000 * 113.61481 * 334.57248 * 27 26 2 44 44 H 1.09006 * 113.61050 * 105.47073 * 27 26 2 45 45 H 1.09000 * 113.61222 * 270.88562 * 28 27 26 46 46 H 1.08995 * 113.69290 * 139.99580 * 28 27 26 47 47 H 1.09000 * 113.61674 * 220.01625 * 29 28 27 48 48 H 1.09000 * 113.61349 * 89.11766 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1192 6 7 1.7068 -0.2501 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 1 3.1005 -1.5193 -3.4664 9 6 1.1042 -1.7244 -4.3985 10 6 1.7512 -1.2279 -5.7023 11 1 1.0300 -0.9461 -6.4695 12 7 2.8043 -2.1116 -6.2085 13 6 2.5827 -2.8655 -7.3034 14 8 1.5113 -2.8127 -7.8694 15 6 3.6658 -3.7750 -7.8238 16 16 3.0671 -4.6474 -9.2925 17 6 4.4913 -5.6104 -9.6780 18 1 5.3752 -5.5383 -9.0614 19 6 4.4775 -6.4618 -10.7741 20 7 3.4005 -6.5494 -11.5259 21 14 5.9877 -7.4823 -11.1833 22 1 6.3068 -8.3746 -10.0401 23 1 5.7179 -8.3032 -12.3911 24 1 7.1385 -6.5808 -11.4439 25 6 2.2848 -0.0355 -4.8909 26 6 2.0400 -0.7213 1.2493 27 6 2.0721 0.1675 2.5038 28 6 3.4108 -0.5053 2.8503 29 6 3.5738 -0.7769 1.3455 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.1488 0.5384 -2.5436 34 1 0.0985 -1.3370 -4.2351 35 1 1.1693 -2.8039 -4.2624 36 1 3.6610 -2.1541 -5.7556 37 1 4.5430 -3.1831 -8.0849 38 1 3.9323 -4.4998 -7.0546 39 1 3.3907 -7.1447 -12.2917 40 1 3.3044 0.2487 -5.1515 41 1 1.6020 0.8136 -4.8620 42 1 1.5574 -1.6856 1.4079 43 1 2.1622 1.2311 2.2831 44 1 1.2759 -0.0523 3.2150 45 1 3.3028 -1.4103 3.4481 46 1 4.1549 0.1817 3.2531 47 1 3.9901 -1.7591 1.1216 48 1 4.0745 0.0286 0.8082 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758664653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:19 Heat of formation + Delta-G solvation = -47.496326 kcal Electronic energy + Delta-G solvation = -26384.183052 eV Core-core repulsion = 22566.080975 eV Total energy + Delta-G solvation = -3818.102077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.88279 -39.93854 -38.62470 -37.68622 -34.39255 -33.38768 -32.41997 -32.10134 -29.03990 -26.46128 -26.00755 -25.74781 -25.52200 -25.00564 -22.92556 -21.01878 -20.37141 -19.86954 -19.60206 -17.85914 -17.38160 -17.00826 -16.16808 -16.02022 -15.78524 -15.39404 -15.18810 -14.87189 -14.79389 -14.53836 -14.19415 -13.68962 -13.39636 -13.15780 -13.09906 -12.87135 -12.80105 -12.71073 -12.64308 -12.63932 -12.24791 -12.01725 -11.89401 -11.69192 -11.06387 -11.03659 -11.02330 -10.93993 -10.77884 -10.75097 -10.71750 -10.46393 -9.84732 -9.79809 -9.43539 -9.30991 -9.05370 -8.89654 -8.23851 -6.49342 -6.20631 -3.91336 2.37165 2.85681 2.99590 3.04252 3.24698 3.28210 3.31405 3.67917 4.07970 4.16031 4.21452 4.23761 4.25334 4.34478 4.52813 4.58086 4.70123 4.75927 4.76181 4.88834 4.91489 5.11652 5.14495 5.26996 5.29805 5.34849 5.35726 5.37153 5.40051 5.51858 5.54296 5.55061 5.62664 5.64119 5.68805 5.84049 5.86854 5.89435 5.93262 5.95052 6.14774 6.16029 6.21927 6.65335 7.20194 7.60329 7.67415 7.96717 8.36051 8.58533 9.24613 10.86713 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.001743 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.145312 B =16056.649472 C =17015.449424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 H 0.096 0.904 4 C 0.516 3.484 5 O -0.531 6.531 6 N -0.721 5.721 7 C 0.122 3.878 8 H 0.115 0.885 9 C -0.164 4.164 10 C 0.129 3.871 11 H 0.109 0.891 12 N -0.722 5.722 13 C 0.536 3.464 14 O -0.515 6.515 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.153 4.153 26 C -0.090 4.090 27 C -0.136 4.136 28 C -0.147 4.147 29 C -0.124 4.124 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.399 0.601 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.772 19.133 27.380 33.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.124 4.124 3 H 0.114 0.886 4 C 0.302 3.698 5 O -0.406 6.406 6 N -0.372 5.372 7 C 0.017 3.983 8 H 0.132 0.868 9 C -0.205 4.205 10 C 0.021 3.979 11 H 0.127 0.873 12 N -0.376 5.376 13 C 0.322 3.678 14 O -0.389 6.389 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.192 4.192 26 C -0.108 4.108 27 C -0.173 4.173 28 C -0.184 4.184 29 C -0.161 4.161 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.234 0.766 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.098 0.902 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.136 18.404 26.339 32.539 hybrid contribution 2.309 -0.332 0.543 2.395 sum -2.827 18.072 26.882 32.515 Atomic orbital electron populations 1.21757 0.92832 1.02920 1.02573 1.21390 0.97508 1.00423 0.93053 0.88641 1.20718 0.79831 0.84627 0.84583 1.90715 1.37333 1.25920 1.86681 1.46040 1.53677 1.31995 1.05538 1.22636 0.98602 0.94546 0.82521 0.86751 1.23947 0.98970 1.01857 0.95681 1.21532 0.91131 0.89896 0.95294 0.87335 1.45726 1.16848 1.44622 1.30398 1.20335 0.88905 0.79547 0.78993 1.90698 1.25990 1.65033 1.57198 1.23543 1.00186 1.01119 1.05643 1.85379 1.21532 1.50359 1.25996 1.22832 1.00630 1.28717 1.16279 0.90951 1.24988 0.97078 0.96383 0.95099 1.70008 1.27485 1.36532 1.16283 0.86224 0.81683 0.79653 0.77941 1.19931 1.20809 1.19941 1.23745 1.03062 0.97610 0.94803 1.22361 0.97129 0.99008 0.92342 1.22979 0.97972 0.99070 0.97288 1.22856 0.97523 1.00773 0.97291 1.22802 0.95572 1.02563 0.95199 0.91328 0.92192 0.91951 0.76638 0.89047 0.90383 0.76669 0.89129 0.89110 0.92133 0.90051 0.88444 0.88851 0.90190 0.91511 0.90275 0.91617 0.90808 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.08 37.16 0.34 -0.31 16 2 C -0.10 -0.61 2.48 -91.77 -0.23 -0.84 16 3 H 0.10 0.43 7.94 -51.93 -0.41 0.02 16 4 C 0.52 4.61 6.96 -10.99 -0.08 4.53 16 5 O -0.53 -6.93 14.45 5.55 0.08 -6.85 16 6 N -0.72 -5.04 5.25 -53.02 -0.28 -5.31 16 7 C 0.12 1.04 4.12 -67.12 -0.28 0.76 16 8 H 0.11 1.18 7.47 -51.93 -0.39 0.80 16 9 C -0.16 -1.64 7.68 -25.92 -0.20 -1.84 16 10 C 0.13 1.41 4.32 -67.12 -0.29 1.12 16 11 H 0.11 1.37 7.46 -51.93 -0.39 0.98 16 12 N -0.72 -9.46 5.26 -53.02 -0.28 -9.74 16 13 C 0.54 9.90 7.85 -10.99 -0.09 9.82 16 14 O -0.52 -11.57 15.46 5.56 0.09 -11.48 16 15 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 16 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 17 C -0.54 -15.37 9.50 30.94 0.29 -15.08 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 21 Si 0.92 21.55 29.55 -169.99 -5.02 16.52 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C -0.15 -1.12 7.58 -25.91 -0.20 -1.32 16 26 C -0.09 -0.63 2.72 -89.81 -0.24 -0.87 16 27 C -0.14 -0.72 7.63 -25.92 -0.20 -0.92 16 28 C -0.15 -0.91 8.08 -25.92 -0.21 -1.12 16 29 C -0.12 -0.99 6.19 -25.92 -0.16 -1.15 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.20 7.56 -51.93 -0.39 -0.19 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.40 1.67 8.15 -40.82 -0.33 1.34 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.40 4.21 8.70 -40.82 -0.36 3.86 16 37 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 38 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 39 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.52 8.12 -51.93 -0.42 0.10 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.36 7.96 -51.93 -0.41 -0.06 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.07 0.73 7.96 -51.93 -0.41 0.32 16 48 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 406.03 15.07 6.12 6.12 Total: -1.00 -36.02 406.03 -10.31 -46.33 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -8.13 Total: 1.86 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -1.41 Total: -8.10 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.18 Total: -40.58 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: 0.17 Total: -18.33 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.02 -10.31 -46.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758664653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.163 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds