Wall clock time and date at job start Sat Apr 11 2020 06:05:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08991 * 109.47047 * 2 1 4 4 C 1.50706 * 109.46902 * 239.99673 * 2 1 3 5 5 O 1.21283 * 120.00003 * 239.99855 * 4 2 1 6 6 N 1.34769 * 119.99945 * 60.00300 * 4 2 1 7 7 C 1.46497 * 120.00274 * 179.97438 * 6 4 2 8 8 H 1.09002 * 112.90477 * 336.24972 * 7 6 4 9 9 C 1.53779 * 113.61581 * 107.50145 * 7 6 4 10 10 C 1.53779 * 87.08402 * 139.98450 * 9 7 6 11 11 H 1.09000 * 113.69407 * 220.01236 * 10 9 7 12 12 N 1.46499 * 113.61746 * 89.11614 * 10 9 7 13 13 C 1.34771 * 119.99903 * 107.50534 * 12 10 9 14 14 O 1.21282 * 120.00369 * 359.97438 * 13 12 10 15 15 C 1.50701 * 119.99769 * 180.02562 * 13 12 10 16 16 S 1.81007 * 109.47136 * 179.97438 * 15 13 12 17 17 C 1.76196 * 99.99893 * 180.02562 * 16 15 13 18 18 H 1.08006 * 120.00211 * 0.02562 * 17 16 15 19 19 C 1.38794 * 120.00018 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00053 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 120.00244 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47102 * 60.00002 * 21 19 17 23 23 H 1.48502 * 109.47013 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47112 * 299.99763 * 21 19 17 25 25 C 1.53784 * 113.61569 * 204.99925 * 7 6 4 26 26 C 1.53002 * 109.46962 * 120.00081 * 2 1 3 27 27 C 1.53777 * 113.61419 * 277.49228 * 26 2 1 28 28 C 1.53781 * 87.08397 * 220.02266 * 27 26 2 29 29 C 1.53777 * 87.07931 * 25.43194 * 28 27 26 30 30 H 1.09002 * 109.46633 * 299.99715 * 1 2 3 31 31 H 1.08995 * 109.47242 * 60.00244 * 1 2 3 32 32 H 1.09005 * 109.47016 * 180.02562 * 1 2 3 33 33 H 0.97009 * 120.00192 * 359.97438 * 6 4 2 34 34 H 1.09006 * 113.61307 * 25.43652 * 9 7 6 35 35 H 1.08999 * 113.69146 * 254.54138 * 9 7 6 36 36 H 0.97001 * 119.99349 * 287.50724 * 12 10 9 37 37 H 1.08997 * 109.47565 * 299.99791 * 15 13 12 38 38 H 1.09002 * 109.47005 * 60.00146 * 15 13 12 39 39 H 0.97003 * 120.00219 * 180.02562 * 20 19 17 40 40 H 1.09004 * 113.61451 * 105.47149 * 25 7 6 41 41 H 1.08994 * 113.61477 * 334.56451 * 25 7 6 42 42 H 1.08997 * 112.85044 * 48.80583 * 26 2 1 43 43 H 1.09000 * 113.61481 * 334.57248 * 27 26 2 44 44 H 1.09006 * 113.61050 * 105.47073 * 27 26 2 45 45 H 1.09000 * 113.61222 * 270.88562 * 28 27 26 46 46 H 1.08995 * 113.69290 * 139.99580 * 28 27 26 47 47 H 1.09000 * 113.61674 * 220.01625 * 29 28 27 48 48 H 1.09000 * 113.61349 * 89.11766 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1192 6 7 1.7068 -0.2501 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 1 3.1005 -1.5193 -3.4664 9 6 1.1042 -1.7244 -4.3985 10 6 1.7512 -1.2279 -5.7023 11 1 1.0300 -0.9461 -6.4695 12 7 2.8043 -2.1116 -6.2085 13 6 2.5827 -2.8655 -7.3034 14 8 1.5113 -2.8127 -7.8694 15 6 3.6658 -3.7750 -7.8238 16 16 3.0671 -4.6474 -9.2925 17 6 4.4913 -5.6104 -9.6780 18 1 5.3752 -5.5383 -9.0614 19 6 4.4775 -6.4618 -10.7741 20 7 3.4005 -6.5494 -11.5259 21 14 5.9877 -7.4823 -11.1833 22 1 6.3068 -8.3746 -10.0401 23 1 5.7179 -8.3032 -12.3911 24 1 7.1385 -6.5808 -11.4439 25 6 2.2848 -0.0355 -4.8909 26 6 2.0400 -0.7213 1.2493 27 6 2.0721 0.1675 2.5038 28 6 3.4108 -0.5053 2.8503 29 6 3.5738 -0.7769 1.3455 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.1488 0.5384 -2.5436 34 1 0.0985 -1.3370 -4.2351 35 1 1.1693 -2.8039 -4.2624 36 1 3.6610 -2.1541 -5.7556 37 1 4.5430 -3.1831 -8.0849 38 1 3.9323 -4.4998 -7.0546 39 1 3.3907 -7.1447 -12.2917 40 1 3.3044 0.2487 -5.1515 41 1 1.6020 0.8136 -4.8620 42 1 1.5574 -1.6856 1.4079 43 1 2.1622 1.2311 2.2831 44 1 1.2759 -0.0523 3.2150 45 1 3.3028 -1.4103 3.4481 46 1 4.1549 0.1817 3.2531 47 1 3.9901 -1.7591 1.1216 48 1 4.0745 0.0286 0.8082 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758664653.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:18 Heat of formation + Delta-G solvation = -72.425968 kcal Electronic energy + Delta-G solvation = -26385.264083 eV Core-core repulsion = 22566.080975 eV Total energy + Delta-G solvation = -3819.183108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.65571 -40.88155 -39.57982 -38.59152 -35.28161 -34.59566 -34.20910 -32.96906 -30.56288 -27.68969 -26.92969 -26.74701 -26.24827 -25.81860 -23.59532 -22.24801 -21.09392 -20.65893 -20.27315 -19.83026 -18.14773 -18.00147 -17.34552 -17.08509 -16.88609 -16.49192 -16.29749 -16.02633 -16.01447 -15.64322 -15.29322 -14.84028 -14.62657 -14.33076 -14.12352 -13.75045 -13.54338 -13.42462 -13.31531 -13.23517 -13.18468 -13.10420 -13.04956 -12.87686 -12.61650 -12.54782 -12.15516 -11.91384 -11.76250 -11.61377 -11.41294 -11.29585 -11.13957 -10.99598 -10.96149 -10.51140 -10.30192 -10.16150 -9.93318 -8.67814 -8.35485 -6.13755 1.25222 1.43050 1.45255 1.55247 1.56117 1.69717 2.21737 2.25167 2.27446 2.98435 3.30191 3.38956 3.56357 3.59107 3.73823 3.76250 3.87211 3.93975 4.00341 4.03719 4.10273 4.28302 4.32317 4.41995 4.44586 4.48730 4.60795 4.71129 4.79775 4.86276 4.86940 4.88943 4.90733 4.97674 5.00930 5.03296 5.06739 5.11582 5.21781 5.33032 5.40592 5.42738 5.46438 5.63572 5.64872 6.18615 6.45235 6.63499 7.05616 7.20816 7.34626 8.73449 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020521 B = 0.001743 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.145312 B =16056.649472 C =17015.449424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 H 0.121 0.879 4 C 0.510 3.490 5 O -0.580 6.580 6 N -0.707 5.707 7 C 0.126 3.874 8 H 0.095 0.905 9 C -0.162 4.162 10 C 0.112 3.888 11 H 0.093 0.907 12 N -0.699 5.699 13 C 0.538 3.462 14 O -0.562 6.562 15 C -0.132 4.132 16 S -0.148 6.148 17 C -0.549 4.549 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.998 3.002 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.261 1.261 25 C -0.125 4.125 26 C -0.095 4.095 27 C -0.121 4.121 28 C -0.146 4.146 29 C -0.131 4.131 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.417 0.583 34 H 0.109 0.891 35 H 0.049 0.951 36 H 0.414 0.586 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.272 0.728 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.042 0.958 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.940 21.589 29.215 36.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.139 0.861 4 C 0.298 3.702 5 O -0.459 6.459 6 N -0.359 5.359 7 C 0.021 3.979 8 H 0.113 0.887 9 C -0.202 4.202 10 C 0.006 3.994 11 H 0.112 0.888 12 N -0.352 5.352 13 C 0.324 3.676 14 O -0.440 6.440 15 C -0.283 4.283 16 S 0.080 5.920 17 C -0.697 4.697 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.164 4.164 26 C -0.114 4.114 27 C -0.158 4.158 28 C -0.184 4.184 29 C -0.169 4.169 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.063 0.937 33 H 0.255 0.745 34 H 0.127 0.873 35 H 0.068 0.932 36 H 0.251 0.749 37 H 0.130 0.870 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.147 0.853 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.304 20.924 28.223 35.396 hybrid contribution 2.021 -1.047 0.079 2.277 sum -2.284 19.877 28.301 34.659 Atomic orbital electron populations 1.21767 0.91413 1.02331 1.04274 1.21408 0.98489 1.00906 0.90785 0.86139 1.21331 0.78999 0.84071 0.85780 1.90706 1.39618 1.28184 1.87376 1.45892 1.53292 1.32137 1.04536 1.22415 0.97210 0.94743 0.83579 0.88651 1.23956 1.00489 1.00406 0.95360 1.21776 0.90830 0.91450 0.95345 0.88838 1.45484 1.18097 1.43218 1.28411 1.20028 0.87682 0.79817 0.80049 1.90684 1.27480 1.66732 1.59089 1.23391 1.01162 1.01342 1.02430 1.85526 1.23636 1.52105 1.30782 1.23180 1.00772 1.28973 1.16781 0.90002 1.26120 1.00603 0.97596 0.94754 1.70173 1.30023 1.37530 1.16925 0.85011 0.77264 0.77831 0.77934 1.18834 1.20261 1.18596 1.23658 1.04273 0.96672 0.91778 1.22352 0.96043 0.98953 0.94003 1.22933 0.97350 0.99481 0.96079 1.22867 0.98601 1.01045 0.95871 1.22804 0.96439 1.00880 0.96778 0.89708 0.90449 0.93687 0.74522 0.87283 0.93225 0.74898 0.87025 0.87589 0.91953 0.88981 0.85283 0.90743 0.88460 0.90605 0.90626 0.90751 0.93879 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.90 9.08 71.98 0.65 -0.25 16 2 C -0.09 -0.93 2.48 -11.54 -0.03 -0.96 16 3 H 0.12 0.63 7.94 -2.39 -0.02 0.61 16 4 C 0.51 8.50 6.96 87.66 0.61 9.11 16 5 O -0.58 -15.43 14.45 -3.04 -0.04 -15.47 16 6 N -0.71 -8.16 5.25 -440.04 -2.31 -10.47 16 7 C 0.13 1.92 4.12 45.52 0.19 2.11 16 8 H 0.10 1.90 7.47 -2.39 -0.02 1.88 16 9 C -0.16 -3.08 7.68 31.12 0.24 -2.84 16 10 C 0.11 2.31 4.32 45.52 0.20 2.51 16 11 H 0.09 2.29 7.46 -2.39 -0.02 2.28 16 12 N -0.70 -17.70 5.26 -440.04 -2.32 -20.01 16 13 C 0.54 20.00 7.85 87.66 0.69 20.68 16 14 O -0.56 -26.00 15.46 -3.04 -0.05 -26.04 16 15 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 16 S -0.15 -8.29 20.57 -56.49 -1.16 -9.46 16 17 C -0.55 -31.80 9.50 67.95 0.65 -31.15 16 18 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 19 C 0.01 0.81 5.49 84.86 0.47 1.28 16 20 N -0.91 -56.35 13.22 21.65 0.29 -56.06 16 21 Si 1.00 44.10 29.55 68.60 2.03 46.13 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 24 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 25 C -0.13 -1.44 7.58 31.12 0.24 -1.20 16 26 C -0.09 -1.24 2.72 -10.27 -0.03 -1.27 16 27 C -0.12 -1.01 7.63 31.12 0.24 -0.78 16 28 C -0.15 -1.68 8.08 31.12 0.25 -1.43 16 29 C -0.13 -2.10 6.19 31.12 0.19 -1.91 16 30 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.08 0.23 7.56 -2.39 -0.02 0.22 16 32 H 0.04 0.46 8.14 -2.38 -0.02 0.44 16 33 H 0.42 1.88 8.15 -92.70 -0.76 1.13 16 34 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 35 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.41 8.10 8.70 -92.71 -0.81 7.29 16 37 H 0.11 4.02 8.14 -2.40 -0.02 4.00 16 38 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 39 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.13 0.77 8.12 -2.39 -0.02 0.75 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.10 0.51 7.96 -2.39 -0.02 0.49 16 44 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 45 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.04 0.93 7.96 -2.39 -0.02 0.91 16 48 H 0.07 1.15 8.10 -2.39 -0.02 1.13 16 Total: -1.00 -83.34 406.03 0.82 -82.51 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -0.60 Total: 19.87 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.99 Total: -10.99 kcal Atomic # 7 Polarization: -82.20 SS G_CDS: -4.34 Total: -86.54 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -0.09 Total: -41.51 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.46 kcal Total: -83.34 0.82 -82.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758664653.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.086 kcal (2) G-P(sol) polarization free energy of solvation -83.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds