Wall clock time and date at job start Sat Apr 11 2020 06:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 O 1.21279 * 120.00100 * 2 1 4 4 N 1.34776 * 119.99569 * 180.27376 * 2 1 3 5 5 C 1.46921 * 120.63436 * 353.16252 * 4 2 1 6 6 C 1.53620 * 108.54720 * 126.36876 * 5 4 2 7 7 C 1.53042 * 109.24312 * 54.85589 * 6 5 4 8 8 C 1.53049 * 109.53653 * 298.51445 * 7 6 5 9 9 C 1.46930 * 120.62770 * 173.44073 * 4 2 1 10 10 H 1.08997 * 109.58543 * 113.79915 * 9 4 2 11 11 C 1.52999 * 109.58655 * 353.51627 * 9 4 2 12 12 H 1.08997 * 109.87278 * 57.17647 * 11 9 4 13 13 C 1.54324 * 109.88376 * 296.00285 * 11 9 4 14 14 C 1.55150 * 102.94457 * 218.38795 * 13 11 9 15 15 C 1.54913 * 101.57752 * 35.50450 * 14 13 11 16 16 N 1.47014 * 109.88302 * 178.19372 * 11 9 4 17 17 C 1.34777 * 125.65019 * 298.39902 * 16 11 9 18 18 O 1.21282 * 120.00181 * 4.88869 * 17 16 11 19 19 C 1.50704 * 120.00026 * 184.89232 * 17 16 11 20 20 S 1.80999 * 109.47030 * 179.97438 * 19 17 16 21 21 C 1.76204 * 99.99881 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00301 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99611 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00196 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99418 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47179 * 89.99835 * 25 23 21 27 27 H 1.48498 * 109.46717 * 209.99775 * 25 23 21 28 28 H 1.48492 * 109.47194 * 329.99519 * 25 23 21 29 29 H 1.09000 * 109.46538 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46796 * 120.00126 * 1 2 3 31 31 H 1.08996 * 109.47046 * 239.99643 * 1 2 3 32 32 H 1.09000 * 109.58805 * 246.20439 * 5 4 2 33 33 H 1.09003 * 109.58790 * 6.62606 * 5 4 2 34 34 H 1.09009 * 109.63513 * 294.86502 * 6 5 4 35 35 H 1.08996 * 109.43429 * 174.72943 * 6 5 4 36 36 H 1.08994 * 109.46187 * 178.49651 * 7 6 5 37 37 H 1.08994 * 109.44948 * 58.52458 * 7 6 5 38 38 H 1.08997 * 109.49388 * 301.41370 * 8 7 6 39 39 H 1.08991 * 109.52401 * 181.32949 * 8 7 6 40 40 H 1.09000 * 110.71730 * 336.75808 * 13 11 9 41 41 H 1.09005 * 110.71834 * 100.02335 * 13 11 9 42 42 H 1.08994 * 111.00576 * 277.42828 * 14 13 11 43 43 H 1.09005 * 111.00543 * 153.57372 * 14 13 11 44 44 H 1.09009 * 110.36337 * 204.15209 * 15 14 13 45 45 H 1.08996 * 110.37139 * 81.83313 * 15 14 13 46 46 H 1.08995 * 109.47070 * 299.99428 * 19 17 16 47 47 H 1.09001 * 109.46948 * 59.99615 * 19 17 16 48 48 H 0.96998 * 119.99787 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0056 5 6 1.4681 -2.4438 0.1388 6 6 1.8601 -3.3575 -1.0323 7 6 3.3839 -3.4909 -1.0799 8 6 4.0111 -2.1143 -1.3125 9 6 3.6429 -1.1869 -0.1501 10 1 4.0961 -1.5564 0.7698 11 6 4.1489 0.2279 -0.4388 12 1 3.8354 0.9031 0.3573 13 6 3.5959 0.7167 -1.7941 14 6 4.7929 1.4989 -2.3961 15 6 5.9954 0.6588 -1.8980 16 7 5.6154 0.2231 -0.5419 17 6 6.4708 -0.1231 0.4404 18 8 6.0451 -0.5526 1.4918 19 6 7.9562 0.0234 0.2325 20 16 8.8303 -0.5192 1.7216 21 6 10.4959 -0.2473 1.2149 22 1 10.7035 0.1466 0.2310 23 6 11.5410 -0.5394 2.0804 24 7 11.2879 -1.0190 3.2798 25 14 13.3067 -0.2504 1.5434 26 1 13.7164 1.1288 1.9108 27 1 14.1961 -1.2280 2.2204 28 1 13.4111 -0.4224 0.0721 29 1 -0.3632 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 1.7475 -2.9137 1.0818 33 1 0.3928 -2.2660 0.1213 34 1 1.5031 -2.9271 -1.9680 35 1 1.4130 -4.3413 -0.8900 36 1 3.6647 -4.1599 -1.8933 37 1 3.7423 -3.8981 -0.1345 38 1 3.6339 -1.6956 -2.2454 39 1 5.0950 -2.2129 -1.3699 40 1 3.3288 -0.1282 -2.4289 41 1 2.7399 1.3752 -1.6465 42 1 4.8349 2.5138 -2.0009 43 1 4.7464 1.5070 -3.4852 44 1 6.8965 1.2711 -1.8612 45 1 6.1488 -0.2048 -2.5450 46 1 8.2665 -0.5883 -0.6146 47 1 8.1937 1.0683 0.0325 48 1 12.0183 -1.2227 3.8847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758731420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:28 Heat of formation + Delta-G solvation = -42.491838 kcal Electronic energy + Delta-G solvation = -29050.728828 eV Core-core repulsion = 25232.843761 eV Total energy + Delta-G solvation = -3817.885067 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.29489 -39.21482 -37.51576 -36.88190 -33.25417 -32.49340 -32.39618 -31.42164 -29.67314 -29.01005 -27.74894 -25.46144 -25.12176 -23.91146 -22.49444 -21.50385 -20.93382 -19.23773 -18.77612 -17.71576 -16.97054 -16.42821 -16.18697 -15.84347 -15.57228 -14.85483 -14.77156 -14.64199 -14.50333 -14.34169 -14.04172 -13.78656 -13.58737 -13.45329 -13.17643 -12.85939 -12.72052 -12.50943 -12.48152 -12.22178 -12.12521 -11.89629 -11.71343 -11.31571 -11.11625 -11.03579 -11.01690 -10.98345 -10.81030 -10.71679 -10.58211 -10.39743 -9.77439 -9.55126 -9.13200 -9.03352 -8.60802 -8.22277 -8.17503 -6.45490 -6.18339 -3.88187 2.43291 2.70114 3.10925 3.18607 3.24524 3.30175 3.34818 3.74129 4.23833 4.31366 4.46988 4.54843 4.61631 4.64851 4.74983 4.87905 4.93666 4.95509 5.05982 5.09762 5.11289 5.16706 5.23995 5.27566 5.36864 5.45889 5.51978 5.56459 5.60972 5.65146 5.73942 5.74494 5.79106 5.85790 5.87928 5.94199 6.00400 6.03534 6.14142 6.20360 6.24537 6.36944 6.56996 6.72089 7.27916 7.62865 7.86221 8.05772 8.38687 8.69846 9.26906 10.89091 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.002876 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.535656 B = 9734.479139 C =10149.383626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.501 3.499 3 O -0.527 6.527 4 N -0.604 5.604 5 C 0.107 3.893 6 C -0.133 4.133 7 C -0.122 4.122 8 C -0.130 4.130 9 C 0.132 3.868 10 H 0.093 0.907 11 C 0.141 3.859 12 H 0.116 0.884 13 C -0.131 4.131 14 C -0.133 4.133 15 C 0.100 3.900 16 N -0.623 5.623 17 C 0.548 3.452 18 O -0.517 6.517 19 C -0.147 4.147 20 S -0.061 6.061 21 C -0.534 4.534 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.806 -1.841 -13.908 27.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.291 3.709 3 O -0.406 6.406 4 N -0.338 5.338 5 C -0.016 4.016 6 C -0.171 4.171 7 C -0.159 4.159 8 C -0.168 4.168 9 C 0.029 3.971 10 H 0.110 0.890 11 C 0.038 3.962 12 H 0.133 0.867 13 C -0.169 4.169 14 C -0.171 4.171 15 C -0.023 4.023 16 N -0.361 5.361 17 C 0.336 3.664 18 O -0.392 6.392 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.682 4.682 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.085 0.915 41 H 0.122 0.878 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.993 -2.014 -12.093 26.944 hybrid contribution 1.732 0.433 -1.636 2.421 sum -22.261 -1.582 -13.730 26.203 Atomic orbital electron populations 1.21967 0.92262 1.05255 1.03832 1.20728 0.90342 0.83301 0.76497 1.90628 1.68922 1.32004 1.49002 1.48138 1.07285 1.06089 1.72328 1.21873 0.96829 0.83943 0.98981 1.21983 0.96935 0.99630 0.98557 1.21526 0.94715 0.97174 1.02520 1.22004 1.01449 0.94900 0.98405 1.21764 0.78638 0.96989 0.99720 0.88961 1.22300 0.78655 0.94862 1.00383 0.86684 1.23223 0.98956 1.00286 0.94393 1.22770 0.94663 0.99410 1.00287 1.22274 0.98394 0.97983 0.83654 1.48778 1.06344 1.68271 1.12691 1.19977 0.87591 0.76449 0.82362 1.90674 1.78654 1.43986 1.25894 1.23516 0.93912 1.04990 1.07321 1.85363 1.00515 1.84108 1.13441 1.22868 0.91369 1.50235 1.03736 0.91002 1.24988 0.99443 0.94616 0.94545 1.70022 1.32670 1.41145 1.06492 0.86176 0.82458 0.78195 0.78723 1.20281 1.20777 1.19712 0.89096 0.89678 0.89613 0.90986 0.89567 0.91569 0.90743 0.91633 0.91475 0.91260 0.90677 0.91461 0.87834 0.90682 0.90543 0.90589 0.91848 0.89549 0.89415 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 8.68 36.01 0.31 -0.76 16 2 C 0.50 5.33 6.99 -10.98 -0.08 5.26 16 3 O -0.53 -7.37 10.35 5.56 0.06 -7.32 16 4 N -0.60 -6.31 2.93 -164.96 -0.48 -6.79 16 5 C 0.11 0.77 6.38 -3.49 -0.02 0.75 16 6 C -0.13 -0.89 6.10 -26.39 -0.16 -1.05 16 7 C -0.12 -1.11 5.88 -26.68 -0.16 -1.27 16 8 C -0.13 -1.45 4.97 -26.61 -0.13 -1.58 16 9 C 0.13 1.77 2.63 -67.60 -0.18 1.59 16 10 H 0.09 1.57 6.64 -51.93 -0.34 1.23 16 11 C 0.14 2.05 2.05 -66.96 -0.14 1.92 16 12 H 0.12 2.07 5.85 -52.33 -0.31 1.76 16 13 C -0.13 -1.51 4.93 -24.90 -0.12 -1.64 16 14 C -0.13 -1.40 7.09 -24.58 -0.17 -1.58 16 15 C 0.10 1.24 6.74 -2.53 -0.02 1.22 16 16 N -0.62 -9.92 2.56 -163.02 -0.42 -10.34 16 17 C 0.55 11.13 7.68 -10.98 -0.08 11.04 16 18 O -0.52 -12.31 14.69 5.56 0.08 -12.23 16 19 C -0.15 -3.15 5.09 36.01 0.18 -2.97 16 20 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 21 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 24 N -0.87 -26.54 13.22 55.49 0.73 -25.80 16 25 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 H 0.09 0.57 8.12 -51.93 -0.42 0.15 16 30 H 0.08 0.36 7.95 -51.93 -0.41 -0.05 16 31 H 0.09 0.41 7.68 -51.93 -0.40 0.01 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.39 5.93 -51.93 -0.31 0.08 16 34 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.71 5.70 -51.93 -0.30 0.41 16 39 H 0.07 0.98 7.88 -51.93 -0.41 0.57 16 40 H 0.07 0.70 5.42 -51.93 -0.28 0.42 16 41 H 0.10 1.28 5.61 -51.96 -0.29 0.99 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.93 7.48 -51.92 -0.39 0.54 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 47 H 0.09 1.79 7.95 -51.92 -0.41 1.38 16 48 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 377.00 15.07 5.68 5.68 Total: -1.00 -35.52 377.00 -9.77 -45.29 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -7.62 Total: 0.96 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.57 Total: -2.26 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.17 Total: -42.93 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.14 Total: -19.54 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.52 -9.77 -45.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758731420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.799 kcal (2) G-P(sol) polarization free energy of solvation -35.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds