Wall clock time and date at job start Sat Apr 11 2020 06:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 O 1.21279 * 120.00100 * 2 1 4 4 N 1.34776 * 119.99569 * 180.27376 * 2 1 3 5 5 C 1.46921 * 120.63436 * 353.16252 * 4 2 1 6 6 C 1.53620 * 108.54720 * 126.36876 * 5 4 2 7 7 C 1.53042 * 109.24312 * 54.85589 * 6 5 4 8 8 C 1.53049 * 109.53653 * 298.51445 * 7 6 5 9 9 C 1.46930 * 120.62770 * 173.44073 * 4 2 1 10 10 H 1.08997 * 109.58543 * 113.79915 * 9 4 2 11 11 C 1.52999 * 109.58655 * 353.51627 * 9 4 2 12 12 H 1.08997 * 109.87278 * 57.17647 * 11 9 4 13 13 C 1.54324 * 109.88376 * 296.00285 * 11 9 4 14 14 C 1.55150 * 102.94457 * 218.38795 * 13 11 9 15 15 C 1.54913 * 101.57752 * 35.50450 * 14 13 11 16 16 N 1.47014 * 109.88302 * 178.19372 * 11 9 4 17 17 C 1.34777 * 125.65019 * 298.39902 * 16 11 9 18 18 O 1.21282 * 120.00181 * 4.88869 * 17 16 11 19 19 C 1.50704 * 120.00026 * 184.89232 * 17 16 11 20 20 S 1.80999 * 109.47030 * 179.97438 * 19 17 16 21 21 C 1.76204 * 99.99881 * 180.02562 * 20 19 17 22 22 H 1.07996 * 120.00301 * 0.02562 * 21 20 19 23 23 C 1.38806 * 119.99611 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00196 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99418 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47179 * 89.99835 * 25 23 21 27 27 H 1.48498 * 109.46717 * 209.99775 * 25 23 21 28 28 H 1.48492 * 109.47194 * 329.99519 * 25 23 21 29 29 H 1.09000 * 109.46538 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.46796 * 120.00126 * 1 2 3 31 31 H 1.08996 * 109.47046 * 239.99643 * 1 2 3 32 32 H 1.09000 * 109.58805 * 246.20439 * 5 4 2 33 33 H 1.09003 * 109.58790 * 6.62606 * 5 4 2 34 34 H 1.09009 * 109.63513 * 294.86502 * 6 5 4 35 35 H 1.08996 * 109.43429 * 174.72943 * 6 5 4 36 36 H 1.08994 * 109.46187 * 178.49651 * 7 6 5 37 37 H 1.08994 * 109.44948 * 58.52458 * 7 6 5 38 38 H 1.08997 * 109.49388 * 301.41370 * 8 7 6 39 39 H 1.08991 * 109.52401 * 181.32949 * 8 7 6 40 40 H 1.09000 * 110.71730 * 336.75808 * 13 11 9 41 41 H 1.09005 * 110.71834 * 100.02335 * 13 11 9 42 42 H 1.08994 * 111.00576 * 277.42828 * 14 13 11 43 43 H 1.09005 * 111.00543 * 153.57372 * 14 13 11 44 44 H 1.09009 * 110.36337 * 204.15209 * 15 14 13 45 45 H 1.08996 * 110.37139 * 81.83313 * 15 14 13 46 46 H 1.08995 * 109.47070 * 299.99428 * 19 17 16 47 47 H 1.09001 * 109.46948 * 59.99615 * 19 17 16 48 48 H 0.96998 * 119.99787 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0056 5 6 1.4681 -2.4438 0.1388 6 6 1.8601 -3.3575 -1.0323 7 6 3.3839 -3.4909 -1.0799 8 6 4.0111 -2.1143 -1.3125 9 6 3.6429 -1.1869 -0.1501 10 1 4.0961 -1.5564 0.7698 11 6 4.1489 0.2279 -0.4388 12 1 3.8354 0.9031 0.3573 13 6 3.5959 0.7167 -1.7941 14 6 4.7929 1.4989 -2.3961 15 6 5.9954 0.6588 -1.8980 16 7 5.6154 0.2231 -0.5419 17 6 6.4708 -0.1231 0.4404 18 8 6.0451 -0.5526 1.4918 19 6 7.9562 0.0234 0.2325 20 16 8.8303 -0.5192 1.7216 21 6 10.4959 -0.2473 1.2149 22 1 10.7035 0.1466 0.2310 23 6 11.5410 -0.5394 2.0804 24 7 11.2879 -1.0190 3.2798 25 14 13.3067 -0.2504 1.5434 26 1 13.7164 1.1288 1.9108 27 1 14.1961 -1.2280 2.2204 28 1 13.4111 -0.4224 0.0721 29 1 -0.3632 1.0277 -0.0005 30 1 -0.3633 -0.5138 -0.8900 31 1 -0.3633 -0.5139 0.8899 32 1 1.7475 -2.9137 1.0818 33 1 0.3928 -2.2660 0.1213 34 1 1.5031 -2.9271 -1.9680 35 1 1.4130 -4.3413 -0.8900 36 1 3.6647 -4.1599 -1.8933 37 1 3.7423 -3.8981 -0.1345 38 1 3.6339 -1.6956 -2.2454 39 1 5.0950 -2.2129 -1.3699 40 1 3.3288 -0.1282 -2.4289 41 1 2.7399 1.3752 -1.6465 42 1 4.8349 2.5138 -2.0009 43 1 4.7464 1.5070 -3.4852 44 1 6.8965 1.2711 -1.8612 45 1 6.1488 -0.2048 -2.5450 46 1 8.2665 -0.5883 -0.6146 47 1 8.1937 1.0683 0.0325 48 1 12.0183 -1.2227 3.8847 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758731420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:27 Heat of formation + Delta-G solvation = -65.487848 kcal Electronic energy + Delta-G solvation = -29051.726010 eV Core-core repulsion = 25232.843761 eV Total energy + Delta-G solvation = -3818.882248 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.28746 -40.50467 -38.47078 -38.10069 -34.61110 -34.10101 -33.48881 -32.59568 -30.55206 -30.24590 -28.80627 -27.68708 -25.95500 -24.87997 -23.58334 -22.39565 -21.80353 -20.57410 -19.71462 -19.58028 -18.37708 -17.51251 -17.23124 -16.90600 -16.80351 -16.50046 -16.39362 -15.96405 -15.62626 -15.22911 -15.05445 -15.02849 -14.72138 -14.43460 -14.26732 -14.05249 -13.96065 -13.55014 -13.54480 -13.21731 -13.17292 -12.98700 -12.92368 -12.87930 -12.69930 -12.62194 -12.16823 -11.91997 -11.81589 -11.73761 -11.59359 -11.50981 -11.28139 -11.16485 -10.96024 -10.33679 -10.30847 -9.55878 -9.45528 -8.70628 -8.36750 -6.15807 1.21560 1.40918 1.42612 1.54063 1.54974 1.64172 1.89123 2.24466 2.29519 2.97096 3.22568 3.49602 3.57231 3.68042 3.83362 3.84865 3.95106 4.00759 4.05940 4.14791 4.19914 4.26209 4.32054 4.39858 4.46339 4.48721 4.59731 4.61633 4.67250 4.68877 4.77816 4.90036 4.92082 4.97283 5.01178 5.07017 5.08291 5.14122 5.18408 5.19927 5.36221 5.38941 5.43675 5.50134 5.62820 6.17469 6.45107 6.51583 7.03876 7.11391 7.25729 8.72697 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018831 B = 0.002876 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.535656 B = 9734.479139 C =10149.383626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.491 3.509 3 O -0.569 6.569 4 N -0.605 5.605 5 C 0.100 3.900 6 C -0.124 4.124 7 C -0.123 4.123 8 C -0.120 4.120 9 C 0.136 3.864 10 H 0.041 0.959 11 C 0.139 3.861 12 H 0.076 0.924 13 C -0.116 4.116 14 C -0.123 4.123 15 C 0.089 3.911 16 N -0.614 5.614 17 C 0.544 3.456 18 O -0.565 6.565 19 C -0.119 4.119 20 S -0.148 6.148 21 C -0.547 4.547 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 1.001 2.999 26 H -0.268 1.268 27 H -0.276 1.276 28 H -0.257 1.257 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.124 0.876 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.105 0.895 47 H 0.101 0.899 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.232 -1.946 -17.564 30.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.282 3.718 3 O -0.450 6.450 4 N -0.338 5.338 5 C -0.022 4.022 6 C -0.162 4.162 7 C -0.161 4.161 8 C -0.158 4.158 9 C 0.031 3.969 10 H 0.059 0.941 11 C 0.036 3.964 12 H 0.094 0.906 13 C -0.153 4.153 14 C -0.161 4.161 15 C -0.033 4.033 16 N -0.350 5.350 17 C 0.332 3.668 18 O -0.444 6.444 19 C -0.270 4.270 20 S 0.079 5.921 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.193 1.193 27 H -0.201 1.201 28 H -0.181 1.181 29 H 0.108 0.892 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.100 0.900 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.104 0.896 41 H 0.118 0.882 42 H 0.086 0.914 43 H 0.131 0.869 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.472 -2.122 -15.799 30.048 hybrid contribution 2.056 0.490 -0.487 2.169 sum -23.415 -1.632 -16.286 28.569 Atomic orbital electron populations 1.21973 0.88123 1.06067 1.06086 1.21650 0.92287 0.82523 0.75298 1.90623 1.70138 1.33383 1.50829 1.48263 1.05940 1.07611 1.72025 1.22167 0.98549 0.82536 0.98932 1.21956 0.94613 1.00780 0.98813 1.21552 0.96867 0.95847 1.01841 1.21915 1.00110 0.95815 0.97987 1.21403 0.80740 0.96339 0.98374 0.94083 1.22329 0.77540 0.95195 1.01298 0.90622 1.23094 0.99005 1.00837 0.92381 1.22782 0.92726 0.98297 1.02293 1.22648 0.99585 0.99298 0.81733 1.48763 1.06843 1.66172 1.13180 1.19784 0.87577 0.76719 0.82719 1.90654 1.79182 1.46497 1.28074 1.23305 0.94033 1.05609 1.04036 1.85562 1.02535 1.85134 1.18898 1.23185 0.91384 1.50561 1.04300 0.90037 1.26162 1.04791 0.93839 0.94364 1.70189 1.34419 1.42188 1.07972 0.84924 0.75536 0.78371 0.78958 1.19315 1.20082 1.18102 0.89161 0.86610 0.87817 0.92197 0.85812 0.89985 0.88451 0.90248 0.93749 0.89339 0.93191 0.89633 0.88215 0.91410 0.86901 0.90218 0.89686 0.87675 0.88106 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.68 71.24 0.62 -0.92 16 2 C 0.49 10.03 6.99 87.66 0.61 10.64 16 3 O -0.57 -16.26 10.35 -3.03 -0.03 -16.29 16 4 N -0.60 -12.34 2.93 -794.20 -2.33 -14.67 16 5 C 0.10 1.24 6.38 86.51 0.55 1.80 16 6 C -0.12 -1.29 6.10 30.82 0.19 -1.10 16 7 C -0.12 -2.14 5.88 30.62 0.18 -1.96 16 8 C -0.12 -2.65 4.97 30.67 0.15 -2.49 16 9 C 0.14 3.80 2.63 44.97 0.12 3.92 16 10 H 0.04 1.56 6.64 -2.39 -0.02 1.55 16 11 C 0.14 4.20 2.05 45.34 0.09 4.29 16 12 H 0.08 2.95 5.85 -9.54 -0.06 2.89 16 13 C -0.12 -2.50 4.93 31.78 0.16 -2.35 16 14 C -0.12 -2.30 7.09 31.98 0.23 -2.07 16 15 C 0.09 2.07 6.74 86.86 0.59 2.66 16 16 N -0.61 -20.11 2.56 -788.06 -2.02 -22.12 16 17 C 0.54 23.33 7.68 87.66 0.67 24.00 16 18 O -0.57 -29.22 14.69 -3.04 -0.04 -29.26 16 19 C -0.12 -5.24 5.09 71.24 0.36 -4.88 16 20 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 21 C -0.55 -32.33 9.50 67.96 0.65 -31.68 16 22 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 23 C 0.01 0.77 5.49 84.86 0.47 1.23 16 24 N -0.91 -57.30 13.22 21.65 0.29 -57.02 16 25 Si 1.00 44.61 29.55 68.60 2.03 46.63 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 28 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 29 H 0.09 0.92 8.12 -2.39 -0.02 0.90 16 30 H 0.12 0.42 7.95 -2.39 -0.02 0.41 16 31 H 0.10 0.64 7.68 -2.39 -0.02 0.62 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.12 0.63 5.93 -2.39 -0.01 0.61 16 34 H 0.08 0.66 8.14 -2.38 -0.02 0.65 16 35 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.58 5.70 -2.39 -0.01 1.57 16 39 H 0.05 1.33 7.88 -2.39 -0.02 1.31 16 40 H 0.09 1.53 5.42 -2.39 -0.01 1.52 16 41 H 0.10 2.35 5.61 -3.76 -0.02 2.33 16 42 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.08 1.82 7.48 -2.38 -0.02 1.80 16 45 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.11 4.21 8.14 -2.40 -0.02 4.19 16 47 H 0.10 4.15 7.95 -2.40 -0.02 4.13 16 48 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -84.85 377.00 3.27 -81.58 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.91 Total: 19.93 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 5.63 Total: 1.08 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -4.06 Total: -93.81 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -0.08 Total: -45.55 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -84.85 3.27 -81.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758731420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.089 kcal (2) G-P(sol) polarization free energy of solvation -84.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds