Wall clock time and date at job start Sat Apr 11 2020 06:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21279 * 119.99892 * 2 1 4 4 N 1.34777 * 119.99533 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63403 * 2.27081 * 4 2 1 6 6 C 1.53189 * 108.77426 * 233.58117 * 5 4 2 7 7 C 1.53041 * 109.31867 * 305.36974 * 6 5 4 8 8 C 1.53032 * 109.53665 * 61.36078 * 7 6 5 9 9 C 1.46928 * 120.62340 * 182.24731 * 4 2 1 10 10 H 1.09001 * 109.70475 * 246.27122 * 9 4 2 11 11 C 1.52997 * 109.58970 * 6.62951 * 9 4 2 12 12 H 1.08996 * 109.87743 * 42.93022 * 11 9 4 13 13 C 1.54324 * 109.88032 * 281.91695 * 11 9 4 14 14 C 1.55161 * 102.94288 * 218.23239 * 13 11 9 15 15 C 1.54911 * 101.58074 * 35.50547 * 14 13 11 16 16 N 1.47288 * 110.00430 * 163.99774 * 11 9 4 17 17 C 1.34778 * 125.79085 * 298.42630 * 16 11 9 18 18 O 1.21283 * 119.99833 * 357.76666 * 17 16 11 19 19 C 1.50702 * 120.00495 * 177.76469 * 17 16 11 20 20 S 1.80992 * 109.47599 * 180.02562 * 19 17 16 21 21 C 1.76201 * 100.00276 * 180.02562 * 20 19 17 22 22 H 1.07996 * 119.99471 * 359.97438 * 21 20 19 23 23 C 1.38792 * 120.00198 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99982 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00022 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47218 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.47186 * 120.00212 * 25 23 21 28 28 H 1.48497 * 109.47402 * 239.99865 * 25 23 21 29 29 H 1.09004 * 109.46592 * 240.00426 * 1 2 3 30 30 H 1.08999 * 109.46777 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.47359 * 120.00293 * 1 2 3 32 32 H 1.09001 * 109.58159 * 113.79663 * 5 4 2 33 33 H 1.08993 * 109.70256 * 353.44473 * 5 4 2 34 34 H 1.08997 * 109.49622 * 185.41182 * 6 5 4 35 35 H 1.09002 * 109.49314 * 65.32297 * 6 5 4 36 36 H 1.09005 * 109.45334 * 301.34640 * 7 6 5 37 37 H 1.08996 * 109.45234 * 181.38082 * 7 6 5 38 38 H 1.09005 * 109.50162 * 178.68373 * 8 7 6 39 39 H 1.09000 * 109.52614 * 58.60627 * 8 7 6 40 40 H 1.08999 * 110.72333 * 99.87635 * 13 11 9 41 41 H 1.08994 * 110.87389 * 336.66742 * 13 11 9 42 42 H 1.09000 * 111.00527 * 277.43046 * 14 13 11 43 43 H 1.09004 * 111.03799 * 153.58708 * 14 13 11 44 44 H 1.08998 * 110.37144 * 81.82567 * 15 14 13 45 45 H 1.09001 * 110.36634 * 204.04453 * 15 14 13 46 46 H 1.09003 * 109.46901 * 300.00542 * 19 17 16 47 47 H 1.09001 * 109.46627 * 59.99681 * 19 17 16 48 48 H 0.97007 * 120.00228 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4612 -2.4472 -0.0490 6 6 1.9297 -3.3217 1.1182 7 6 3.4535 -3.4553 1.0709 8 6 4.0931 -2.0726 1.2162 9 6 3.6492 -1.1838 0.0501 10 1 4.0440 -1.5828 -0.8843 11 6 4.1714 0.2386 0.2617 12 1 3.5686 0.7466 1.0143 13 6 4.1187 1.0202 -1.0680 14 6 5.4195 1.8651 -1.0263 15 6 6.3981 0.8946 -0.3189 16 7 5.5797 0.1997 0.6914 17 6 6.0442 -0.3745 1.8188 18 8 5.2717 -0.8857 2.6016 19 6 7.5234 -0.3814 2.1067 20 16 7.8277 -1.2198 3.6817 21 6 9.5825 -1.0851 3.7661 22 1 10.1249 -0.5916 2.9732 23 6 10.2678 -1.6140 4.8509 24 7 9.6068 -2.2168 5.8166 25 14 12.1282 -1.4718 4.9400 26 1 12.6280 -0.7559 3.7388 27 1 12.5090 -0.7160 6.1603 28 1 12.7266 -2.8299 4.9922 29 1 -0.3633 -0.5138 0.8901 30 1 -0.3633 1.0277 0.0005 31 1 -0.3634 -0.5138 -0.8899 32 1 1.6754 -2.9505 -0.9918 33 1 0.3891 -2.2694 0.0349 34 1 1.4752 -4.3092 1.0381 35 1 1.6340 -2.8600 2.0602 36 1 3.7501 -3.8943 0.1183 37 1 3.7871 -4.0973 1.8862 38 1 5.1787 -2.1710 1.2060 39 1 3.7776 -1.6224 2.1574 40 1 3.2408 1.6654 -1.1016 41 1 4.1281 0.3395 -1.9192 42 1 5.2772 2.7727 -0.4398 43 1 5.7642 2.1026 -2.0327 44 1 6.8063 0.1798 -1.0334 45 1 7.2027 1.4510 0.1619 46 1 8.0465 -0.9078 1.3083 47 1 7.8870 0.6445 2.1646 48 1 10.0857 -2.5861 6.5751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758731421.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:30 Heat of formation + Delta-G solvation = -11.032043 kcal Electronic energy + Delta-G solvation = -29289.443211 eV Core-core repulsion = 25472.922344 eV Total energy + Delta-G solvation = -3816.520867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.26088 -39.34024 -37.40584 -36.90384 -33.12091 -32.44033 -32.40869 -31.44783 -29.64583 -28.73816 -27.86584 -25.47275 -24.97222 -23.76344 -22.24745 -21.55819 -20.53016 -19.42408 -19.07370 -17.71126 -17.00312 -16.64956 -16.14432 -15.76373 -15.55052 -14.94341 -14.78364 -14.73832 -14.22669 -14.00414 -13.93719 -13.54153 -13.31582 -13.17704 -13.09063 -12.94348 -12.76948 -12.55593 -12.51641 -12.40827 -12.00900 -11.70058 -11.39004 -11.28561 -11.11695 -11.05420 -11.00635 -10.83439 -10.71483 -10.56456 -10.24727 -10.12105 -9.75294 -9.27268 -9.05316 -8.86395 -8.67878 -8.19759 -8.00508 -6.46517 -6.19879 -3.89425 2.45272 2.75432 3.11430 3.15630 3.22672 3.29757 3.34962 3.73626 4.22681 4.37177 4.60528 4.64516 4.69923 4.81029 4.89303 4.97625 5.04118 5.10643 5.12295 5.15560 5.20374 5.26442 5.30426 5.36053 5.44609 5.54704 5.61451 5.63008 5.67226 5.77139 5.81126 5.85374 5.91467 5.96120 6.02333 6.08322 6.16155 6.21468 6.26339 6.33543 6.51270 6.60010 6.68906 6.97286 7.31110 7.62128 7.86427 8.14372 8.37716 8.72742 9.25838 10.87541 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017540 B = 0.003184 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.965786 B = 8791.530795 C = 9865.254840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.499 3.501 3 O -0.530 6.530 4 N -0.602 5.602 5 C 0.109 3.891 6 C -0.135 4.135 7 C -0.126 4.126 8 C -0.134 4.134 9 C 0.139 3.861 10 H 0.063 0.937 11 C 0.145 3.855 12 H 0.105 0.895 13 C -0.120 4.120 14 C -0.136 4.136 15 C 0.101 3.899 16 N -0.622 5.622 17 C 0.537 3.463 18 O -0.503 6.503 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.533 4.533 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.885 2.196 -17.232 24.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.290 3.710 3 O -0.409 6.409 4 N -0.336 5.336 5 C -0.013 4.013 6 C -0.173 4.173 7 C -0.164 4.164 8 C -0.171 4.171 9 C 0.036 3.964 10 H 0.081 0.919 11 C 0.042 3.958 12 H 0.123 0.877 13 C -0.157 4.157 14 C -0.174 4.174 15 C -0.023 4.023 16 N -0.361 5.361 17 C 0.327 3.673 18 O -0.378 6.378 19 C -0.297 4.297 20 S 0.166 5.834 21 C -0.681 4.681 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.131 0.869 40 H 0.134 0.866 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.676 1.849 -15.824 24.548 hybrid contribution 2.216 0.353 -0.970 2.444 sum -16.460 2.202 -16.794 23.618 Atomic orbital electron populations 1.21972 0.92385 1.05184 1.03801 1.20801 0.90317 0.83518 0.76407 1.90633 1.68618 1.32190 1.49465 1.48143 1.06691 1.05962 1.72832 1.21756 0.96477 0.84012 0.99101 1.21916 0.97379 0.99411 0.98568 1.21665 0.94265 0.98859 1.01600 1.23033 1.01290 0.93487 0.99311 1.21880 0.78473 0.97032 0.99030 0.91902 1.22207 0.81701 0.93378 0.98510 0.87725 1.23160 0.98814 0.99010 0.94713 1.22817 0.95768 0.98315 1.00478 1.22262 0.94470 0.94688 0.90882 1.48810 1.08338 1.57252 1.21657 1.19795 0.90231 0.76892 0.80386 1.90700 1.57019 1.43809 1.46318 1.23529 0.94080 1.05445 1.06659 1.85301 1.07944 1.72686 1.17432 1.22907 0.91809 1.43460 1.09967 0.90976 1.24980 0.99345 0.94569 0.94695 1.70031 1.35882 1.35296 1.09121 0.86132 0.83264 0.77994 0.78204 1.19626 1.20585 1.20599 0.89539 0.89146 0.89838 0.91486 0.89726 0.91074 0.91308 0.92907 0.91367 0.90259 0.86922 0.86559 0.92506 0.90751 0.90540 0.91878 0.90699 0.89695 0.89509 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 8.66 36.01 0.31 -0.85 16 2 C 0.50 5.44 7.51 -10.98 -0.08 5.36 16 3 O -0.53 -7.22 9.72 5.56 0.05 -7.16 16 4 N -0.60 -6.53 2.97 -165.22 -0.49 -7.02 16 5 C 0.11 0.87 6.34 -3.71 -0.02 0.85 16 6 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 7 C -0.13 -1.58 5.88 -26.69 -0.16 -1.74 16 8 C -0.13 -2.08 3.29 -26.61 -0.09 -2.17 16 9 C 0.14 1.86 2.72 -67.60 -0.18 1.67 16 10 H 0.06 0.82 7.74 -51.93 -0.40 0.41 16 11 C 0.14 2.10 2.19 -66.81 -0.15 1.95 16 12 H 0.11 1.83 5.96 -51.84 -0.31 1.52 16 13 C -0.12 -1.43 5.44 -24.89 -0.14 -1.57 16 14 C -0.14 -1.47 7.09 -24.58 -0.17 -1.64 16 15 C 0.10 1.26 6.67 -2.53 -0.02 1.25 16 16 N -0.62 -9.81 3.03 -162.82 -0.49 -10.31 16 17 C 0.54 10.47 6.03 -10.98 -0.07 10.40 16 18 O -0.50 -11.02 10.97 5.56 0.06 -10.96 16 19 C -0.15 -3.08 5.20 36.01 0.19 -2.89 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 25 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H 0.09 0.49 7.79 -51.93 -0.40 0.09 16 30 H 0.09 0.60 8.12 -51.93 -0.42 0.18 16 31 H 0.08 0.39 7.85 -51.93 -0.41 -0.02 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.46 5.94 -51.93 -0.31 0.15 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.08 1.45 5.44 -51.93 -0.28 1.17 16 39 H 0.11 2.11 5.85 -53.35 -0.31 1.80 16 40 H 0.12 1.50 5.38 -54.11 -0.29 1.21 16 41 H 0.06 0.63 7.60 -51.93 -0.39 0.24 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.93 7.48 -51.93 -0.39 0.54 16 46 H 0.08 1.68 8.14 -51.91 -0.42 1.26 16 47 H 0.09 1.74 7.81 -51.92 -0.41 1.34 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -33.78 371.79 -9.98 -43.76 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -7.68 Total: 2.75 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -0.54 Total: -3.86 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: -0.25 Total: -42.86 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.11 Total: -18.13 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.78 -9.98 -43.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758731421.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.725 kcal (2) G-P(sol) polarization free energy of solvation -33.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds