Wall clock time and date at job start Sat Apr 11 2020 06:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00008 * 2 1 4 4 N 1.34778 * 119.99699 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63281 * 7.21771 * 4 2 1 6 6 C 1.53195 * 108.77746 * 126.36578 * 5 4 2 7 7 C 1.53105 * 109.33200 * 54.63312 * 6 5 4 8 8 C 1.53045 * 109.50353 * 298.66048 * 7 6 5 9 9 C 1.46927 * 120.62788 * 187.18805 * 4 2 1 10 10 H 1.08997 * 109.70276 * 113.77696 * 9 4 2 11 11 C 1.52998 * 109.58674 * 353.42365 * 9 4 2 12 12 H 1.08997 * 109.87490 * 312.94072 * 11 9 4 13 13 C 1.54322 * 109.88528 * 74.12208 * 11 9 4 14 14 C 1.55153 * 102.94309 * 141.60904 * 13 11 9 15 15 C 1.54911 * 101.58309 * 324.49785 * 14 13 11 16 16 N 1.47028 * 109.88300 * 191.92868 * 11 9 4 17 17 C 1.34774 * 125.64720 * 61.67473 * 16 11 9 18 18 O 1.21290 * 120.00146 * 7.25400 * 17 16 11 19 19 C 1.50700 * 120.00058 * 187.25060 * 17 16 11 20 20 S 1.81005 * 109.47187 * 180.02562 * 19 17 16 21 21 C 1.76196 * 99.99998 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99826 * 359.97438 * 21 20 19 23 23 C 1.38795 * 119.99971 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00305 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00077 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46847 * 90.00558 * 25 23 21 27 27 H 1.48500 * 109.47045 * 210.00244 * 25 23 21 28 28 H 1.48492 * 109.47235 * 330.00755 * 25 23 21 29 29 H 1.09005 * 109.46961 * 175.28695 * 1 2 3 30 30 H 1.09000 * 109.47232 * 295.28605 * 1 2 3 31 31 H 1.09002 * 109.47206 * 55.29152 * 1 2 3 32 32 H 1.08999 * 109.58621 * 246.15147 * 5 4 2 33 33 H 1.09001 * 109.58827 * 6.43755 * 5 4 2 34 34 H 1.09000 * 109.49964 * 174.58727 * 6 5 4 35 35 H 1.08998 * 109.49372 * 294.64873 * 6 5 4 36 36 H 1.08997 * 109.50355 * 178.63247 * 7 6 5 37 37 H 1.09001 * 109.44880 * 58.64928 * 7 6 5 38 38 H 1.08997 * 109.49318 * 301.37898 * 8 7 6 39 39 H 1.08996 * 109.49737 * 181.31577 * 8 7 6 40 40 H 1.08999 * 110.71552 * 259.97321 * 13 11 9 41 41 H 1.08998 * 110.71531 * 23.24464 * 13 11 9 42 42 H 1.09003 * 111.00243 * 206.42489 * 14 13 11 43 43 H 1.08995 * 111.00539 * 82.57690 * 14 13 11 44 44 H 1.08999 * 110.36450 * 278.16807 * 15 14 13 45 45 H 1.09001 * 110.45990 * 155.89699 * 15 14 13 46 46 H 1.08998 * 109.46999 * 300.00022 * 19 17 16 47 47 H 1.08999 * 109.47479 * 60.00201 * 19 17 16 48 48 H 0.96994 * 120.00597 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4689 -2.4427 -0.1577 6 6 2.1035 -3.2214 -1.3143 7 6 3.6066 -3.3676 -1.0625 8 6 4.2517 -1.9811 -1.0014 9 6 3.6414 -1.1883 0.1587 10 1 3.9018 -1.6648 1.1038 11 6 4.1799 0.2436 0.1408 12 1 3.7412 0.7942 -0.6913 13 6 3.8465 0.9466 1.4735 14 6 5.1201 1.7881 1.7508 15 6 6.2324 0.8574 1.2064 16 7 5.6444 0.2255 0.0114 17 6 6.3349 -0.2839 -1.0279 18 8 5.7474 -0.6617 -2.0194 19 6 7.8369 -0.3840 -0.9581 20 16 8.4658 -1.1027 -2.4957 21 6 10.1933 -1.1035 -2.1489 22 1 10.5545 -0.7263 -1.2035 23 6 11.0901 -1.5879 -3.0910 24 7 12.3807 -1.5880 -2.8322 25 14 10.4654 -2.2396 -4.7265 26 1 10.4111 -1.1309 -5.7129 27 1 11.3830 -3.2974 -5.2208 28 1 9.1057 -2.8085 -4.5459 29 1 -0.3633 -1.0242 -0.0844 30 1 -0.3634 0.4389 0.9292 31 1 -0.3634 0.5852 -0.8448 32 1 1.5500 -3.0229 0.7614 33 1 0.4186 -2.2502 -0.3769 34 1 1.6482 -4.2095 -1.3808 35 1 1.9414 -2.6826 -2.2479 36 1 4.0570 -3.9423 -1.8718 37 1 3.7675 -3.8849 -0.1167 38 1 4.0698 -1.4537 -1.9378 39 1 5.3253 -2.0859 -0.8454 40 1 2.9748 1.5915 1.3617 41 1 3.6874 0.2152 2.2659 42 1 5.2467 1.9650 2.8189 43 1 5.0941 2.7289 1.2010 44 1 6.4905 0.1010 1.9476 45 1 7.1145 1.4369 0.9340 46 1 8.2614 0.6107 -0.8221 47 1 8.1202 -1.0178 -0.1178 48 1 13.0074 -1.9269 -3.4904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758731422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:33 Heat of formation + Delta-G solvation = -12.544478 kcal Electronic energy + Delta-G solvation = -29350.728884 eV Core-core repulsion = 25534.142432 eV Total energy + Delta-G solvation = -3816.586452 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.34960 -39.43030 -37.48591 -36.98924 -33.24349 -32.51814 -32.41922 -31.55192 -29.67540 -28.88450 -27.93955 -25.59848 -25.08795 -23.83467 -22.32678 -21.61366 -20.61500 -19.41533 -19.20685 -17.73681 -17.06487 -16.72225 -16.22387 -15.87397 -15.72795 -15.07721 -14.84915 -14.82630 -14.30776 -14.07074 -14.00784 -13.65857 -13.39194 -13.23043 -13.11685 -13.04467 -12.82231 -12.78835 -12.60767 -12.38381 -12.14519 -11.81113 -11.46135 -11.26186 -11.25576 -11.12333 -10.99054 -10.93863 -10.62427 -10.52804 -10.33018 -10.20892 -9.83897 -9.37149 -9.11870 -8.98419 -8.68895 -8.46805 -8.13668 -6.88715 -6.27047 -3.98115 2.38944 2.64186 2.87605 3.02778 3.32613 3.35966 3.51138 3.67872 4.30773 4.34501 4.45403 4.54480 4.60667 4.70383 4.78532 4.82727 4.90637 5.03807 5.08247 5.10774 5.12131 5.13783 5.21604 5.28668 5.32712 5.36992 5.51664 5.59468 5.60365 5.67851 5.73616 5.78020 5.84458 5.85287 5.93678 6.00511 6.08613 6.10698 6.17159 6.24314 6.44327 6.52859 6.61921 6.81377 7.24931 7.76388 7.96210 8.05063 8.44026 8.57352 9.19275 10.82348 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.003444 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.843299 B = 8128.453671 C = 9302.427241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.499 3.501 3 O -0.527 6.527 4 N -0.603 5.603 5 C 0.105 3.895 6 C -0.135 4.135 7 C -0.125 4.125 8 C -0.131 4.131 9 C 0.139 3.861 10 H 0.065 0.935 11 C 0.143 3.857 12 H 0.111 0.889 13 C -0.124 4.124 14 C -0.134 4.134 15 C 0.099 3.901 16 N -0.622 5.622 17 C 0.539 3.461 18 O -0.506 6.506 19 C -0.118 4.118 20 S -0.142 6.142 21 C -0.520 4.520 22 H 0.087 0.913 23 C 0.095 3.905 24 N -0.882 5.882 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.235 1.235 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.116 0.884 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.518 0.526 11.157 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.289 3.711 3 O -0.406 6.406 4 N -0.337 5.337 5 C -0.018 4.018 6 C -0.173 4.173 7 C -0.163 4.163 8 C -0.169 4.169 9 C 0.036 3.964 10 H 0.083 0.917 11 C 0.040 3.960 12 H 0.128 0.872 13 C -0.161 4.161 14 C -0.172 4.172 15 C -0.024 4.024 16 N -0.360 5.360 17 C 0.328 3.672 18 O -0.382 6.382 19 C -0.269 4.269 20 S 0.084 5.916 21 C -0.667 4.667 22 H 0.105 0.895 23 C -0.113 4.113 24 N -0.518 5.518 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.117 0.883 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.095 0.905 46 H 0.112 0.888 47 H 0.112 0.888 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -25.841 0.437 9.559 27.555 hybrid contribution 0.881 -0.128 0.603 1.075 sum -24.959 0.309 10.162 26.950 Atomic orbital electron populations 1.22062 0.92390 1.04372 1.05070 1.20746 0.90311 0.83427 0.76595 1.90623 1.68652 1.32180 1.49158 1.48142 1.07275 1.06255 1.72037 1.21887 0.96456 0.84369 0.99045 1.21930 0.96897 1.00027 0.98422 1.21655 0.94519 0.98457 1.01672 1.22784 1.00333 0.94343 0.99404 1.21891 0.78529 0.97189 0.98839 0.91668 1.22250 0.79085 0.93688 1.00928 0.87156 1.23215 0.99127 0.99367 0.94424 1.22796 0.94837 0.98586 1.00990 1.22298 0.97027 0.95708 0.87375 1.48724 1.06957 1.60468 1.19862 1.19760 0.88787 0.76586 0.82094 1.90727 1.69714 1.47118 1.30615 1.23292 0.93531 1.05239 1.04826 1.84707 1.06567 1.81166 1.19123 1.22322 0.88685 1.48637 1.07084 0.89461 1.24711 0.94075 0.94171 0.98357 1.69939 1.01179 1.44912 1.35800 0.86732 0.81174 0.79988 0.83928 1.19236 1.20005 1.15944 0.90153 0.88908 0.88953 0.91429 0.89207 0.90977 0.91371 0.91399 0.92640 0.88320 0.89882 0.86676 0.92411 0.90423 0.90674 0.91724 0.90545 0.88818 0.88841 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.09 10.10 36.01 0.36 -0.73 16 2 C 0.50 5.14 7.38 -10.99 -0.08 5.06 16 3 O -0.53 -6.96 9.80 5.56 0.05 -6.91 16 4 N -0.60 -6.17 2.97 -165.22 -0.49 -6.66 16 5 C 0.11 0.77 6.29 -3.71 -0.02 0.75 16 6 C -0.13 -1.19 6.08 -26.58 -0.16 -1.35 16 7 C -0.13 -1.48 5.89 -26.65 -0.16 -1.64 16 8 C -0.13 -1.94 3.36 -26.61 -0.09 -2.03 16 9 C 0.14 1.77 2.65 -67.60 -0.18 1.59 16 10 H 0.07 0.81 7.85 -51.93 -0.41 0.40 16 11 C 0.14 1.99 2.13 -66.95 -0.14 1.85 16 12 H 0.11 1.88 5.98 -51.68 -0.31 1.57 16 13 C -0.12 -1.41 5.31 -24.90 -0.13 -1.55 16 14 C -0.13 -1.39 7.08 -24.58 -0.17 -1.56 16 15 C 0.10 1.20 6.64 -2.53 -0.02 1.18 16 16 N -0.62 -9.41 3.05 -163.02 -0.50 -9.91 16 17 C 0.54 10.05 5.93 -10.99 -0.07 9.99 16 18 O -0.51 -10.67 11.39 5.55 0.06 -10.61 16 19 C -0.12 -2.39 5.29 36.01 0.19 -2.20 16 20 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 21 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 22 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 23 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 24 N -0.88 -26.85 13.97 55.49 0.78 -26.08 16 25 Si 0.86 21.97 27.74 -169.99 -4.72 17.25 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 29 H 0.08 0.33 5.17 -51.93 -0.27 0.06 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.43 5.18 -51.93 -0.27 0.17 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.76 6.29 -51.93 -0.33 1.43 16 39 H 0.08 1.46 5.24 -51.93 -0.27 1.19 16 40 H 0.12 1.41 5.40 -53.64 -0.29 1.12 16 41 H 0.06 0.61 7.66 -51.93 -0.40 0.21 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.91 7.53 -51.93 -0.39 0.52 16 46 H 0.09 1.82 7.74 -51.92 -0.40 1.42 16 47 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 48 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -33.83 368.02 -9.27 -43.10 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -7.56 Total: 2.64 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.45 Total: -2.75 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: -0.21 Total: -42.65 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: 0.12 Total: -17.52 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.25 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.83 -9.27 -43.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758731422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.555 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds