Wall clock time and date at job start Sat Apr 11 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21278 * 120.00008 * 2 1 4 4 N 1.34778 * 119.99699 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63281 * 7.21771 * 4 2 1 6 6 C 1.53195 * 108.77746 * 126.36578 * 5 4 2 7 7 C 1.53105 * 109.33200 * 54.63312 * 6 5 4 8 8 C 1.53045 * 109.50353 * 298.66048 * 7 6 5 9 9 C 1.46927 * 120.62788 * 187.18805 * 4 2 1 10 10 H 1.08997 * 109.70276 * 113.77696 * 9 4 2 11 11 C 1.52998 * 109.58674 * 353.42365 * 9 4 2 12 12 H 1.08997 * 109.87490 * 312.94072 * 11 9 4 13 13 C 1.54322 * 109.88528 * 74.12208 * 11 9 4 14 14 C 1.55153 * 102.94309 * 141.60904 * 13 11 9 15 15 C 1.54911 * 101.58309 * 324.49785 * 14 13 11 16 16 N 1.47028 * 109.88300 * 191.92868 * 11 9 4 17 17 C 1.34774 * 125.64720 * 61.67473 * 16 11 9 18 18 O 1.21290 * 120.00146 * 7.25400 * 17 16 11 19 19 C 1.50700 * 120.00058 * 187.25060 * 17 16 11 20 20 S 1.81005 * 109.47187 * 180.02562 * 19 17 16 21 21 C 1.76196 * 99.99998 * 180.02562 * 20 19 17 22 22 H 1.08002 * 119.99826 * 359.97438 * 21 20 19 23 23 C 1.38795 * 119.99971 * 180.02562 * 21 20 19 24 24 N 1.31634 * 120.00305 * 179.97438 * 23 21 20 25 25 Si 1.86805 * 120.00077 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.46847 * 90.00558 * 25 23 21 27 27 H 1.48500 * 109.47045 * 210.00244 * 25 23 21 28 28 H 1.48492 * 109.47235 * 330.00755 * 25 23 21 29 29 H 1.09005 * 109.46961 * 175.28695 * 1 2 3 30 30 H 1.09000 * 109.47232 * 295.28605 * 1 2 3 31 31 H 1.09002 * 109.47206 * 55.29152 * 1 2 3 32 32 H 1.08999 * 109.58621 * 246.15147 * 5 4 2 33 33 H 1.09001 * 109.58827 * 6.43755 * 5 4 2 34 34 H 1.09000 * 109.49964 * 174.58727 * 6 5 4 35 35 H 1.08998 * 109.49372 * 294.64873 * 6 5 4 36 36 H 1.08997 * 109.50355 * 178.63247 * 7 6 5 37 37 H 1.09001 * 109.44880 * 58.64928 * 7 6 5 38 38 H 1.08997 * 109.49318 * 301.37898 * 8 7 6 39 39 H 1.08996 * 109.49737 * 181.31577 * 8 7 6 40 40 H 1.08999 * 110.71552 * 259.97321 * 13 11 9 41 41 H 1.08998 * 110.71531 * 23.24464 * 13 11 9 42 42 H 1.09003 * 111.00243 * 206.42489 * 14 13 11 43 43 H 1.08995 * 111.00539 * 82.57690 * 14 13 11 44 44 H 1.08999 * 110.36450 * 278.16807 * 15 14 13 45 45 H 1.09001 * 110.45990 * 155.89699 * 15 14 13 46 46 H 1.08998 * 109.46999 * 300.00022 * 19 17 16 47 47 H 1.08999 * 109.47479 * 60.00201 * 19 17 16 48 48 H 0.96994 * 120.00597 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 1.4689 -2.4427 -0.1577 6 6 2.1035 -3.2214 -1.3143 7 6 3.6066 -3.3676 -1.0625 8 6 4.2517 -1.9811 -1.0014 9 6 3.6414 -1.1883 0.1587 10 1 3.9018 -1.6648 1.1038 11 6 4.1799 0.2436 0.1408 12 1 3.7412 0.7942 -0.6913 13 6 3.8465 0.9466 1.4735 14 6 5.1201 1.7881 1.7508 15 6 6.2324 0.8574 1.2064 16 7 5.6444 0.2255 0.0114 17 6 6.3349 -0.2839 -1.0279 18 8 5.7474 -0.6617 -2.0194 19 6 7.8369 -0.3840 -0.9581 20 16 8.4658 -1.1027 -2.4957 21 6 10.1933 -1.1035 -2.1489 22 1 10.5545 -0.7263 -1.2035 23 6 11.0901 -1.5879 -3.0910 24 7 12.3807 -1.5880 -2.8322 25 14 10.4654 -2.2396 -4.7265 26 1 10.4111 -1.1309 -5.7129 27 1 11.3830 -3.2974 -5.2208 28 1 9.1057 -2.8085 -4.5459 29 1 -0.3633 -1.0242 -0.0844 30 1 -0.3634 0.4389 0.9292 31 1 -0.3634 0.5852 -0.8448 32 1 1.5500 -3.0229 0.7614 33 1 0.4186 -2.2502 -0.3769 34 1 1.6482 -4.2095 -1.3808 35 1 1.9414 -2.6826 -2.2479 36 1 4.0570 -3.9423 -1.8718 37 1 3.7675 -3.8849 -0.1167 38 1 4.0698 -1.4537 -1.9378 39 1 5.3253 -2.0859 -0.8454 40 1 2.9748 1.5915 1.3617 41 1 3.6874 0.2152 2.2659 42 1 5.2467 1.9650 2.8189 43 1 5.0941 2.7289 1.2010 44 1 6.4905 0.1010 1.9476 45 1 7.1145 1.4369 0.9340 46 1 8.2614 0.6107 -0.8221 47 1 8.1202 -1.0178 -0.1178 48 1 13.0074 -1.9269 -3.4904 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758731422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:05:32 Heat of formation + Delta-G solvation = -34.418763 kcal Electronic energy + Delta-G solvation = -29351.677424 eV Core-core repulsion = 25534.142432 eV Total energy + Delta-G solvation = -3817.534992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.35582 -40.58747 -38.41748 -38.15016 -34.69983 -34.14125 -33.49816 -32.68259 -30.64245 -30.01506 -28.93518 -27.87747 -25.93546 -24.85372 -23.37829 -22.55591 -21.57937 -20.58506 -20.21806 -19.64042 -18.37162 -17.74584 -17.32462 -17.13697 -16.82351 -16.57711 -16.37533 -15.79836 -15.66346 -15.35317 -15.01628 -14.91692 -14.71588 -14.41242 -14.17941 -14.03123 -13.94624 -13.87547 -13.52331 -13.38357 -13.28466 -13.06176 -13.00108 -12.85908 -12.71322 -12.32230 -12.09082 -12.04471 -11.91192 -11.85438 -11.51703 -11.34041 -11.19683 -11.16163 -10.59530 -10.56242 -10.24660 -9.60626 -9.29982 -9.01961 -8.54015 -6.24815 0.94287 1.28871 1.42480 1.50317 1.53481 1.64138 1.91469 2.21985 2.27430 2.66988 2.84045 3.46201 3.52373 3.68530 3.83785 3.86939 3.99528 4.00741 4.06458 4.15792 4.19330 4.23526 4.26299 4.37941 4.42619 4.54992 4.58605 4.62001 4.70067 4.75333 4.77853 4.86367 4.87457 4.96852 5.03208 5.09515 5.14453 5.18777 5.26198 5.28999 5.40885 5.48022 5.61333 5.64878 5.68437 6.08617 6.45256 6.51757 6.90903 7.12298 7.28838 8.58750 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016449 B = 0.003444 C = 0.003009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.843299 B = 8128.453671 C = 9302.427241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.488 3.512 3 O -0.563 6.563 4 N -0.605 5.605 5 C 0.103 3.897 6 C -0.130 4.130 7 C -0.125 4.125 8 C -0.122 4.122 9 C 0.146 3.854 10 H 0.075 0.925 11 C 0.143 3.857 12 H 0.077 0.923 13 C -0.112 4.112 14 C -0.124 4.124 15 C 0.089 3.911 16 N -0.616 5.616 17 C 0.539 3.461 18 O -0.539 6.539 19 C -0.103 4.103 20 S -0.167 6.167 21 C -0.530 4.530 22 H 0.060 0.940 23 C 0.047 3.953 24 N -0.917 5.917 25 Si 0.915 3.085 26 H -0.263 1.263 27 H -0.257 1.257 28 H -0.237 1.237 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.049 0.951 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.548 -0.134 12.785 31.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.281 3.719 3 O -0.444 6.444 4 N -0.339 5.339 5 C -0.018 4.018 6 C -0.168 4.168 7 C -0.163 4.163 8 C -0.160 4.160 9 C 0.041 3.959 10 H 0.093 0.907 11 C 0.040 3.960 12 H 0.095 0.905 13 C -0.149 4.149 14 C -0.162 4.162 15 C -0.033 4.033 16 N -0.353 5.353 17 C 0.327 3.673 18 O -0.417 6.417 19 C -0.254 4.254 20 S 0.060 5.940 21 C -0.677 4.677 22 H 0.078 0.922 23 C -0.159 4.159 24 N -0.555 5.555 25 Si 0.737 3.263 26 H -0.188 1.188 27 H -0.181 1.181 28 H -0.161 1.161 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.141 0.859 34 H 0.118 0.882 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.129 0.871 41 H 0.091 0.909 42 H 0.127 0.873 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.120 0.880 47 H 0.123 0.877 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -28.896 -0.222 11.225 31.001 hybrid contribution 1.791 0.147 0.187 1.806 sum -27.106 -0.075 11.412 29.410 Atomic orbital electron populations 1.22065 0.88593 1.06252 1.05946 1.21583 0.92118 0.82746 0.75491 1.90613 1.69752 1.33374 1.50667 1.48266 1.06087 1.07677 1.71834 1.22158 0.97578 0.82918 0.99156 1.21908 0.94652 1.01728 0.98483 1.21638 0.96672 0.96276 1.01699 1.22464 0.98832 0.96197 0.98544 1.21635 0.80473 0.95773 0.97998 0.90671 1.22297 0.77711 0.94655 1.01290 0.90550 1.23102 0.99345 0.99467 0.93016 1.22793 0.93264 0.97493 1.02674 1.22615 0.97701 0.96517 0.86489 1.48730 1.07905 1.58992 1.19651 1.19413 0.87985 0.77084 0.82784 1.90744 1.69905 1.48852 1.32179 1.23234 0.94932 1.05291 1.01929 1.84600 1.04184 1.82173 1.23060 1.22456 0.90846 1.48295 1.06141 0.92220 1.25556 0.94259 0.94373 1.01692 1.70014 1.02307 1.45883 1.37311 0.85866 0.80793 0.79905 0.79783 1.18785 1.18068 1.16094 0.87595 0.87339 0.88786 0.89399 0.85893 0.88191 0.93035 0.93256 0.91269 0.92140 0.93288 0.87101 0.90858 0.87285 0.91404 0.89864 0.90514 0.87993 0.87720 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.49 10.10 71.24 0.72 -0.77 16 2 C 0.49 9.19 7.38 87.66 0.65 9.84 16 3 O -0.56 -14.59 9.80 -3.02 -0.03 -14.62 16 4 N -0.60 -11.25 2.97 -795.03 -2.36 -13.61 16 5 C 0.10 1.16 6.29 86.36 0.54 1.70 16 6 C -0.13 -2.04 6.08 30.69 0.19 -1.85 16 7 C -0.13 -2.93 5.89 30.64 0.18 -2.74 16 8 C -0.12 -3.75 3.36 30.67 0.10 -3.65 16 9 C 0.15 3.61 2.65 44.97 0.12 3.73 16 10 H 0.08 1.72 7.85 -2.39 -0.02 1.70 16 11 C 0.14 3.97 2.13 45.34 0.10 4.07 16 12 H 0.08 2.71 5.98 -3.86 -0.02 2.69 16 13 C -0.11 -2.36 5.31 31.78 0.17 -2.19 16 14 C -0.12 -2.32 7.08 31.99 0.23 -2.09 16 15 C 0.09 2.03 6.64 86.86 0.58 2.60 16 16 N -0.62 -18.78 3.05 -788.07 -2.40 -21.18 16 17 C 0.54 20.77 5.93 87.66 0.52 21.29 16 18 O -0.54 -23.95 11.39 -3.06 -0.03 -23.98 16 19 C -0.10 -4.26 5.29 71.24 0.38 -3.88 16 20 S -0.17 -8.73 18.55 -56.49 -1.05 -9.78 16 21 C -0.53 -31.70 10.04 67.95 0.68 -31.02 16 22 H 0.06 3.78 8.03 -2.91 -0.02 3.75 16 23 C 0.05 2.79 5.50 84.86 0.47 3.26 16 24 N -0.92 -56.78 13.97 21.65 0.30 -56.47 16 25 Si 0.91 45.87 27.74 68.60 1.90 47.78 16 26 H -0.26 -12.92 7.11 99.48 0.71 -12.22 16 27 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 28 H -0.24 -11.86 6.74 99.48 0.67 -11.19 16 29 H 0.11 0.35 5.17 -2.38 -0.01 0.34 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.12 0.59 5.18 -2.39 -0.01 0.57 16 34 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 2.31 6.29 -2.39 -0.02 2.30 16 39 H 0.05 1.81 5.24 -2.39 -0.01 1.80 16 40 H 0.11 2.57 5.40 -34.84 -0.19 2.38 16 41 H 0.07 1.33 7.66 -2.39 -0.02 1.31 16 42 H 0.11 1.40 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.08 1.75 7.53 -2.39 -0.02 1.74 16 46 H 0.10 4.02 7.74 -2.40 -0.02 4.00 16 47 H 0.10 4.07 8.14 -2.40 -0.02 4.05 16 48 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -78.02 368.02 2.68 -75.34 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.74 Total: 18.24 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.61 Total: -1.71 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -4.46 Total: -91.26 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.06 Total: -38.61 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.90 Total: 47.78 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.78 kcal Total: -78.02 2.68 -75.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758731422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.924 kcal (2) G-P(sol) polarization free energy of solvation -78.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds