Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00232 * 2 1 4 4 C 1.52999 * 109.47678 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46905 * 67.18004 * 4 3 2 6 6 C 1.46900 * 110.99871 * 53.27647 * 5 4 3 7 7 C 1.52993 * 109.47317 * 66.04906 * 6 5 4 8 8 O 1.42904 * 109.47592 * 64.99729 * 7 6 5 9 9 C 1.35941 * 117.00398 * 180.02562 * 8 7 6 10 10 C 1.38708 * 120.02930 * 0.27768 * 9 8 7 11 11 C 1.38154 * 119.96768 * 180.25089 * 10 9 8 12 12 C 1.38454 * 120.02963 * 359.47222 * 11 10 9 13 13 F 1.35096 * 119.96939 * 180.29530 * 12 11 10 14 14 C 1.38456 * 120.05919 * 0.27332 * 12 11 10 15 15 C 1.38147 * 120.03148 * 359.97438 * 14 12 11 16 16 C 1.46903 * 111.00352 * 289.32314 * 5 4 3 17 17 C 1.50703 * 109.47124 * 295.81657 * 16 5 4 18 18 O 1.21299 * 119.99802 * 353.45836 * 17 16 5 19 19 N 1.34773 * 120.00082 * 173.46036 * 17 16 5 20 20 C 1.37100 * 119.99759 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00235 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99857 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00032 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00074 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46918 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46784 * 119.99871 * 24 22 20 27 27 H 1.48491 * 109.47491 * 240.00177 * 24 22 20 28 28 H 1.09000 * 109.46875 * 60.00323 * 1 2 3 29 29 H 1.09002 * 109.47093 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47258 * 300.00265 * 1 2 3 31 31 H 1.09005 * 109.46950 * 59.99836 * 3 2 1 32 32 H 1.09000 * 109.47106 * 300.00174 * 3 2 1 33 33 H 1.09004 * 109.47165 * 307.18405 * 4 3 2 34 34 H 1.09003 * 109.47595 * 187.17919 * 4 3 2 35 35 H 1.08997 * 109.47424 * 306.04280 * 6 5 4 36 36 H 1.09005 * 109.46995 * 186.04609 * 6 5 4 37 37 H 1.09002 * 109.47176 * 305.00144 * 7 6 5 38 38 H 1.08996 * 109.47389 * 184.99976 * 7 6 5 39 39 H 1.08000 * 120.01762 * 0.02562 * 10 9 8 40 40 H 1.08004 * 119.98646 * 179.74703 * 11 10 9 41 41 H 1.08007 * 119.98258 * 179.97438 * 14 12 11 42 42 H 1.08003 * 120.01439 * 180.02562 * 15 14 12 43 43 H 1.09008 * 109.46666 * 55.80842 * 16 5 4 44 44 H 1.09000 * 109.47389 * 175.81054 * 16 5 4 45 45 H 0.97001 * 119.99707 * 0.02562 * 19 17 16 46 46 H 0.96999 * 120.00071 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9817 0.6103 -1.2757 6 6 3.4427 1.3698 -2.4118 7 6 4.0437 2.7767 -2.4159 8 8 5.4509 2.6930 -2.6506 9 6 6.1417 3.8633 -2.6846 10 6 5.4792 5.0663 -2.4901 11 6 6.1816 6.2553 -2.5301 12 6 7.5480 6.2456 -2.7532 13 9 8.2347 7.4086 -2.7861 14 6 8.2114 5.0451 -2.9423 15 6 7.5106 3.8551 -2.9079 16 6 3.6162 -0.8093 -1.3706 17 6 4.3465 -1.5883 -0.3071 18 8 5.1855 -1.0410 0.3770 19 7 4.0676 -2.8929 -0.1162 20 6 4.7324 -3.6016 0.8509 21 1 5.4793 -3.1144 1.4601 22 6 4.4452 -4.9469 1.0474 23 7 3.5367 -5.5399 0.3059 24 14 5.3504 -5.9123 2.3656 25 1 6.3158 -5.0206 3.0572 26 1 4.3731 -6.4416 3.3505 27 1 6.0816 -7.0419 1.7377 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8483 0.5370 0.8197 34 1 3.9782 2.1725 0.1291 35 1 2.3586 1.4380 -2.3217 36 1 3.6987 0.8626 -3.3421 37 1 3.8640 3.2515 -1.4513 38 1 3.5785 3.3683 -3.2043 39 1 4.4141 5.0738 -2.3112 40 1 5.6654 7.1925 -2.3828 41 1 9.2773 5.0391 -3.1167 42 1 8.0284 2.9188 -3.0550 43 1 2.5412 -0.9181 -1.2268 44 1 3.8917 -1.1905 -2.3539 45 1 3.3970 -3.3306 -0.6636 46 1 3.3359 -6.4789 0.4433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066567821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -115.125136 kcal Electronic energy + Delta-G solvation = -29651.432744 eV Core-core repulsion = 25264.184885 eV Total energy + Delta-G solvation = -4387.247859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.163 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -48.97788 -40.29420 -39.20160 -37.61960 -37.40507 -35.90692 -33.73230 -31.54254 -31.13027 -30.64254 -29.70719 -28.96562 -26.64955 -25.75253 -24.26190 -23.80385 -22.94813 -22.23222 -20.22096 -18.96082 -18.55287 -17.71407 -17.53488 -16.85121 -16.70373 -16.61964 -16.06025 -15.82408 -15.60492 -14.98484 -14.89443 -14.60017 -14.52953 -14.19437 -14.10718 -13.82062 -13.68373 -13.44309 -13.17490 -13.01706 -12.60338 -12.44190 -12.24191 -11.93487 -11.84594 -11.67505 -11.53410 -11.36533 -11.21390 -10.95887 -10.94364 -10.83456 -10.61666 -10.27582 -10.12041 -9.56072 -9.40757 -9.34206 -8.29255 -8.22443 -7.83807 -7.69795 -6.30994 -3.70495 0.94344 1.04933 3.06561 3.22694 3.32221 3.38840 3.39820 3.78221 4.01844 4.11600 4.12723 4.31495 4.44951 4.54961 4.78997 4.87425 4.93060 5.00784 5.07436 5.13277 5.14782 5.19980 5.31798 5.33892 5.36596 5.39088 5.46868 5.60768 5.65250 5.69230 5.72254 5.84083 5.88691 5.97591 6.05798 6.06280 6.33722 6.48982 6.49583 6.51695 7.17599 7.27209 7.31310 7.45930 7.65400 8.19233 8.75610 9.30529 9.69536 10.22354 10.87315 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013390 B = 0.002479 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.606321 B =11291.516014 C =12774.419720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.371 6.371 3 C 0.016 3.984 4 C 0.049 3.951 5 N -0.500 5.500 6 C 0.046 3.954 7 C 0.064 3.936 8 O -0.285 6.285 9 C 0.132 3.868 10 C -0.188 4.188 11 C -0.113 4.113 12 C 0.048 3.952 13 F -0.145 7.145 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.034 3.966 17 C 0.456 3.544 18 O -0.581 6.581 19 N -0.567 5.567 20 C -0.292 4.292 21 H 0.102 0.898 22 C 0.019 3.981 23 N -0.905 5.905 24 Si 0.926 3.074 25 H -0.269 1.269 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.035 0.965 29 H 0.087 0.913 30 H 0.037 0.963 31 H 0.049 0.951 32 H 0.047 0.953 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.391 0.609 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 20.317 -8.302 22.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.290 6.290 3 C -0.062 4.062 4 C -0.079 4.079 5 N -0.222 5.222 6 C -0.082 4.082 7 C -0.011 4.011 8 O -0.198 6.198 9 C 0.085 3.915 10 C -0.207 4.207 11 C -0.132 4.132 12 C 0.029 3.971 13 F -0.124 7.124 14 C -0.130 4.130 15 C -0.142 4.142 16 C -0.096 4.096 17 C 0.241 3.759 18 O -0.466 6.466 19 N -0.204 5.204 20 C -0.421 4.421 21 H 0.119 0.881 22 C -0.181 4.181 23 N -0.547 5.547 24 Si 0.754 3.246 25 H -0.193 1.193 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.053 0.947 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.158 0.842 42 H 0.161 0.839 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.224 0.776 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.771 20.177 -7.876 21.836 hybrid contribution -1.274 -0.232 0.377 1.349 sum -4.045 19.944 -7.499 21.688 Atomic orbital electron populations 1.22761 0.82051 1.02904 0.99252 1.88125 1.18999 1.27048 1.94837 1.23515 0.97216 0.85652 0.99816 1.22510 0.88874 1.01730 0.94811 1.61757 1.58253 1.01622 1.00599 1.22257 0.96668 0.92829 0.96436 1.22934 0.79233 0.98465 1.00491 1.86306 1.21241 1.26753 1.85481 1.19145 0.92038 0.85358 0.94927 1.21116 1.00792 0.91437 1.07371 1.20890 0.92405 0.99115 1.00758 1.17554 0.90319 0.81593 1.07643 1.91474 1.79680 1.46712 1.94539 1.20967 1.00834 0.90468 1.00764 1.20369 0.91319 0.98836 1.03679 1.22150 1.00394 0.87656 0.99427 1.19694 0.86248 0.82916 0.87006 1.90488 1.36314 1.69407 1.50359 1.41827 1.36943 1.08065 1.33526 1.19718 1.18610 0.91822 1.11990 0.88053 1.25217 0.97253 0.96995 0.98679 1.69627 1.32617 1.12294 1.40132 0.85845 0.79130 0.79359 0.80272 1.19304 1.20936 1.20881 0.94665 0.89470 0.94391 0.93252 0.93495 0.87075 0.89986 0.92313 0.89548 0.91827 0.91846 0.84696 0.84781 0.84193 0.83862 0.90051 0.90111 0.77597 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.37 -5.59 7.57 -35.23 -0.27 -5.86 16 3 C 0.02 0.21 5.68 37.16 0.21 0.42 16 4 C 0.05 0.76 5.17 -3.82 -0.02 0.74 16 5 N -0.50 -8.11 4.39 -236.06 -1.04 -9.14 16 6 C 0.05 0.54 4.97 -3.83 -0.02 0.53 16 7 C 0.06 0.66 4.79 37.15 0.18 0.83 16 8 O -0.29 -3.73 10.08 -19.55 -0.20 -3.93 16 9 C 0.13 1.54 6.69 -39.24 -0.26 1.27 16 10 C -0.19 -1.82 9.04 -39.44 -0.36 -2.17 16 11 C -0.11 -1.06 10.02 -39.53 -0.40 -1.46 16 12 C 0.05 0.51 7.30 -39.42 -0.29 0.22 16 13 F -0.15 -1.61 17.27 2.25 0.04 -1.57 16 14 C -0.11 -1.12 10.02 -39.53 -0.40 -1.51 16 15 C -0.12 -1.37 9.98 -39.44 -0.39 -1.76 16 16 C 0.03 0.63 5.13 -4.97 -0.03 0.60 16 17 C 0.46 11.00 7.24 -10.99 -0.08 10.92 16 18 O -0.58 -15.95 14.18 5.54 0.08 -15.87 16 19 N -0.57 -14.73 5.29 -10.96 -0.06 -14.79 16 20 C -0.29 -8.29 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 22 C 0.02 0.53 5.50 -17.47 -0.10 0.43 16 23 N -0.90 -25.09 13.05 55.50 0.72 -24.36 16 24 Si 0.93 21.51 29.55 -169.99 -5.02 16.48 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 28 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.48 5.78 -51.93 -0.30 0.18 16 33 H 0.11 2.24 5.84 -51.93 -0.30 1.93 16 34 H 0.08 1.12 6.70 -51.93 -0.35 0.78 16 35 H 0.06 0.59 5.70 -51.93 -0.30 0.30 16 36 H 0.09 1.00 7.96 -51.93 -0.41 0.59 16 37 H 0.06 0.61 5.98 -51.93 -0.31 0.29 16 38 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 39 H 0.14 1.01 6.30 -52.49 -0.33 0.68 16 40 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 42 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.08 1.43 5.08 -51.92 -0.26 1.17 16 44 H 0.08 1.38 7.97 -51.93 -0.41 0.97 16 45 H 0.39 9.82 7.90 -40.82 -0.32 9.50 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 380.01 15.07 5.73 5.73 Total: -1.00 -33.38 380.01 -7.16 -40.54 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.17 Total: 10.73 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.98 Total: 2.05 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.37 Total: -48.30 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.39 Total: -25.65 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.38 -7.16 -40.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066567821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.586 kcal (2) G-P(sol) polarization free energy of solvation -33.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds