Wall clock time and date at job start Sat Apr 11 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00031 * 2 1 4 4 C 1.50696 * 109.47546 * 275.55414 * 3 2 1 5 5 H 1.08007 * 119.99426 * 4.95886 * 4 3 2 6 6 C 1.37878 * 120.00452 * 184.95701 * 4 3 2 7 7 N 1.31511 * 120.00042 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99640 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47011 * 90.00089 * 8 6 4 10 10 H 1.48505 * 109.46678 * 209.99896 * 8 6 4 11 11 H 1.48498 * 109.47275 * 329.99706 * 8 6 4 12 12 S 1.65600 * 119.99926 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40257 * 159.52015 * 12 2 1 14 14 O 1.42105 * 106.40193 * 26.60451 * 12 2 1 15 15 N 1.65594 * 107.22234 * 273.06409 * 12 2 1 16 16 C 1.46500 * 120.00161 * 62.72987 * 15 12 2 17 17 C 1.52994 * 109.47055 * 164.42593 * 16 15 12 18 18 C 1.53010 * 109.47086 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.47086 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47149 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47391 * 180.02562 * 20 19 18 22 22 C 1.38233 * 120.00375 * 89.99604 * 21 20 19 23 23 C 1.38233 * 120.00329 * 179.97438 * 22 21 20 24 24 C 1.38234 * 119.99869 * 359.97149 * 23 22 21 25 25 C 1.38236 * 120.00005 * 0.28439 * 24 23 22 26 26 C 1.38236 * 119.99839 * 269.97616 * 21 20 19 27 27 H 1.09000 * 109.46879 * 269.99665 * 1 2 3 28 28 H 1.08995 * 109.46893 * 29.99813 * 1 2 3 29 29 H 1.09000 * 109.47055 * 149.99746 * 1 2 3 30 30 H 1.08999 * 109.47252 * 35.55596 * 3 2 1 31 31 H 1.09009 * 109.46957 * 155.55449 * 3 2 1 32 32 H 0.96998 * 119.99615 * 179.97438 * 7 6 4 33 33 H 0.97000 * 119.99959 * 242.74012 * 15 12 2 34 34 H 1.09006 * 109.46868 * 44.42449 * 16 15 12 35 35 H 1.08999 * 109.47108 * 284.43032 * 16 15 12 36 36 H 1.08993 * 109.47615 * 60.00317 * 17 16 15 37 37 H 1.09007 * 109.47298 * 299.99953 * 17 16 15 38 38 H 1.09001 * 109.46594 * 59.99837 * 18 17 16 39 39 H 1.08999 * 109.46914 * 300.00339 * 18 17 16 40 40 H 1.08998 * 109.47477 * 59.99645 * 19 18 17 41 41 H 1.09007 * 109.47298 * 299.99733 * 19 18 17 42 42 H 1.08998 * 109.47510 * 59.99311 * 20 19 18 43 43 H 1.09002 * 109.46741 * 299.99431 * 20 19 18 44 44 H 1.08003 * 119.99669 * 359.97438 * 22 21 20 45 45 H 1.08000 * 120.00193 * 180.02562 * 23 22 21 46 46 H 1.07997 * 120.00216 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.99963 * 179.71984 * 25 24 23 48 48 H 1.08001 * 120.00158 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3296 1.7726 -1.4141 5 1 1.8419 1.2475 -2.2221 6 6 3.0730 2.9038 -1.6763 7 7 3.1878 3.3437 -2.9103 8 14 3.9170 3.8114 -0.2787 9 1 5.2823 3.2609 -0.0841 10 1 4.0083 5.2560 -0.6105 11 1 3.1312 3.6390 0.9695 12 16 2.2930 -1.4341 0.0006 13 8 3.5996 -1.1434 -0.4764 14 8 1.4380 -2.3914 -0.6094 15 7 2.4649 -1.9003 1.5803 16 6 1.2802 -2.1933 2.3907 17 6 1.6988 -2.9572 3.6484 18 6 0.4613 -3.2637 4.4946 19 6 0.8800 -4.0270 5.7526 20 6 -0.3574 -4.3341 6.5984 21 6 0.0550 -5.0854 7.8379 22 6 0.3846 -4.3933 8.9882 23 6 0.7624 -5.0825 10.1253 24 6 0.8101 -6.4640 10.1123 25 6 0.4856 -7.1560 8.9605 26 6 0.1033 -6.4669 7.8247 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6552 2.0014 0.5976 31 1 3.1894 1.1155 0.4253 32 1 3.7105 4.1398 -3.0947 33 1 3.3501 -1.9793 1.9691 34 1 0.5847 -2.8006 1.8113 35 1 0.7958 -1.2597 2.6769 36 1 2.3941 -2.3499 4.2279 37 1 2.1831 -3.8908 3.3622 38 1 -0.2337 -3.8712 3.9149 39 1 -0.0234 -2.3303 4.7807 40 1 1.5749 -3.4192 6.3320 41 1 1.3650 -4.9605 5.4667 42 1 -1.0520 -4.9421 6.0187 43 1 -0.8427 -3.4009 6.8843 44 1 0.3469 -3.3140 8.9984 45 1 1.0195 -4.5418 11.0241 46 1 1.1048 -7.0025 11.0008 47 1 0.5272 -8.2351 8.9490 48 1 -0.1549 -7.0077 6.9262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067951337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:18 Heat of formation + Delta-G solvation = -74.006422 kcal Electronic energy + Delta-G solvation = -26422.214727 eV Core-core repulsion = 22602.963086 eV Total energy + Delta-G solvation = -3819.251641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.69130 -37.09561 -36.57891 -35.63426 -35.19822 -34.96887 -32.39428 -32.32033 -31.25656 -29.21829 -28.39203 -25.76267 -25.15309 -22.94496 -22.78192 -21.92997 -21.44090 -21.09351 -18.88778 -17.30505 -17.11193 -17.01497 -16.54567 -16.28132 -15.99916 -15.54253 -15.38368 -14.99004 -14.27765 -14.21477 -13.87646 -13.84892 -13.75283 -13.58166 -13.13927 -12.91027 -12.66099 -12.49421 -12.41255 -12.29039 -12.05566 -11.74742 -11.58318 -11.51450 -11.41838 -11.34388 -11.30382 -11.21854 -11.19738 -10.81554 -10.77736 -10.65352 -10.45000 -10.27318 -9.56281 -9.36060 -9.29588 -9.04189 -8.58944 -8.12562 -6.08420 -4.07876 0.98314 1.02594 1.16666 3.27328 3.32890 3.34632 3.39929 3.47460 4.09334 4.28650 4.38761 4.43341 4.59326 4.65826 4.67390 4.74864 4.78660 4.90055 4.99581 5.13057 5.15790 5.18021 5.23142 5.27597 5.35772 5.41130 5.53055 5.56294 5.58272 5.63871 5.71572 5.73952 5.78319 5.91504 5.99870 6.03638 6.09790 6.12920 6.14652 6.24187 6.28281 6.44722 6.64015 6.72517 6.99570 7.14839 7.43656 7.58271 8.48805 8.96172 9.50933 11.05086 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.001832 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.625635 B =15279.065543 C =15946.866438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.990 5.990 3 C 0.228 3.772 4 C -0.535 4.535 5 H 0.078 0.922 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.266 1.266 12 S 2.783 3.217 13 O -0.964 6.964 14 O -0.993 6.993 15 N -1.137 6.137 16 C 0.119 3.881 17 C -0.126 4.126 18 C -0.120 4.120 19 C -0.112 4.112 20 C -0.083 4.083 21 C -0.079 4.079 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.128 4.128 25 C -0.119 4.119 26 C -0.119 4.119 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.265 0.735 33 H 0.412 0.588 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.608 -17.254 25.960 32.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.832 5.832 3 C 0.105 3.895 4 C -0.574 4.574 5 H 0.096 0.904 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.190 1.190 12 S 2.791 3.209 13 O -0.948 6.948 14 O -0.977 6.977 15 N -0.896 5.896 16 C -0.008 4.008 17 C -0.165 4.165 18 C -0.158 4.158 19 C -0.150 4.150 20 C -0.121 4.121 21 C -0.079 4.079 22 C -0.137 4.137 23 C -0.137 4.137 24 C -0.146 4.146 25 C -0.137 4.137 26 C -0.137 4.137 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.244 0.756 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.414 -17.549 24.984 31.419 hybrid contribution 0.795 0.791 1.174 1.623 sum -6.620 -16.759 26.158 31.763 Atomic orbital electron populations 1.21409 0.79817 1.03978 1.00138 1.57365 1.14424 1.22531 1.88917 1.19417 0.90909 0.80623 0.98554 1.21392 1.32453 1.11144 0.92368 0.90400 1.24879 0.95643 0.96923 0.95512 1.69896 1.40628 1.23963 1.18773 0.86900 0.80897 0.79293 0.82897 1.19744 1.20976 1.19025 1.01927 0.73342 0.72900 0.72780 1.93643 1.38721 1.84555 1.77842 1.93531 1.68936 1.60805 1.74389 1.56269 1.14040 1.85840 1.33430 1.21234 0.87335 0.99556 0.92647 1.21785 0.98435 1.00802 0.95486 1.21571 0.97679 1.00719 0.95833 1.21566 0.97101 1.00633 0.95699 1.20663 0.98108 0.99942 0.93350 1.19970 0.98719 0.93837 0.95392 1.21090 0.99872 0.99909 0.92794 1.21166 0.99760 0.94473 0.98298 1.21154 1.00727 0.94487 0.98266 1.21167 0.99379 0.99899 0.93256 1.21091 1.00366 0.93801 0.98409 0.94250 0.90147 0.91296 0.95037 0.95137 0.92512 0.75566 0.90692 0.91957 0.91262 0.91173 0.91413 0.91455 0.91754 0.91750 0.90828 0.90850 0.86086 0.86161 0.86265 0.86162 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.52 10.69 59.85 0.64 2.16 16 2 N -0.99 -19.80 3.23 -123.06 -0.40 -20.19 16 3 C 0.23 5.36 4.16 -5.20 -0.02 5.34 16 4 C -0.53 -15.30 9.93 -34.44 -0.34 -15.64 16 5 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.89 -27.61 13.96 55.43 0.77 -26.84 16 8 Si 0.87 21.21 27.37 -169.99 -4.65 16.56 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -5.96 6.69 56.52 0.38 -5.58 16 12 S 2.78 53.62 6.09 -107.50 -0.65 52.96 16 13 O -0.96 -22.66 16.99 -57.17 -0.97 -23.63 16 14 O -0.99 -20.49 16.34 -57.17 -0.93 -21.42 16 15 N -1.14 -15.56 6.05 -10.61 -0.06 -15.63 16 16 C 0.12 1.29 6.26 -4.04 -0.03 1.27 16 17 C -0.13 -1.05 5.36 -26.73 -0.14 -1.19 16 18 C -0.12 -0.82 5.21 -26.73 -0.14 -0.95 16 19 C -0.11 -0.73 5.20 -26.73 -0.14 -0.87 16 20 C -0.08 -0.51 5.34 -27.88 -0.15 -0.66 16 21 C -0.08 -0.58 5.13 -104.63 -0.54 -1.12 16 22 C -0.12 -0.85 9.70 -39.58 -0.38 -1.24 16 23 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 24 C -0.13 -0.86 10.05 -39.58 -0.40 -1.25 16 25 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 26 C -0.12 -0.85 9.70 -39.58 -0.38 -1.23 16 27 H 0.04 0.50 8.06 -51.93 -0.42 0.08 16 28 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 29 H 0.07 1.08 7.05 -51.93 -0.37 0.72 16 30 H 0.03 0.70 7.51 -51.93 -0.39 0.31 16 31 H 0.03 0.72 6.66 -51.92 -0.35 0.38 16 32 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 33 H 0.41 4.87 8.66 -34.46 -0.30 4.57 16 34 H 0.07 0.83 7.79 -51.93 -0.40 0.43 16 35 H 0.06 0.63 8.06 -51.93 -0.42 0.21 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 43 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 46 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 47 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 48 H 0.12 0.71 8.06 -52.49 -0.42 0.28 16 LS Contribution 406.77 15.07 6.13 6.13 Total: -1.00 -35.81 406.77 -11.82 -47.63 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -8.13 Total: 0.20 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.92 Total: -15.77 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: 0.31 Total: -62.66 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -1.91 Total: -45.05 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.65 Total: 16.56 kcal Atomic # 16 Polarization: 53.62 SS G_CDS: -0.65 Total: 52.96 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.81 -11.82 -47.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067951337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.372 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds