Wall clock time and date at job start Sat Apr 11 2020 06:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46496 * 120.00031 * 2 1 4 4 C 1.50696 * 109.47546 * 275.55414 * 3 2 1 5 5 H 1.08007 * 119.99426 * 4.95886 * 4 3 2 6 6 C 1.37878 * 120.00452 * 184.95701 * 4 3 2 7 7 N 1.31511 * 120.00042 * 180.02562 * 6 4 3 8 8 Si 1.86801 * 119.99640 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47011 * 90.00089 * 8 6 4 10 10 H 1.48505 * 109.46678 * 209.99896 * 8 6 4 11 11 H 1.48498 * 109.47275 * 329.99706 * 8 6 4 12 12 S 1.65600 * 119.99926 * 179.97438 * 2 1 3 13 13 O 1.42104 * 106.40257 * 159.52015 * 12 2 1 14 14 O 1.42105 * 106.40193 * 26.60451 * 12 2 1 15 15 N 1.65594 * 107.22234 * 273.06409 * 12 2 1 16 16 C 1.46500 * 120.00161 * 62.72987 * 15 12 2 17 17 C 1.52994 * 109.47055 * 164.42593 * 16 15 12 18 18 C 1.53010 * 109.47086 * 180.02562 * 17 16 15 19 19 C 1.52994 * 109.47086 * 180.02562 * 18 17 16 20 20 C 1.52999 * 109.47149 * 180.02562 * 19 18 17 21 21 C 1.50699 * 109.47391 * 180.02562 * 20 19 18 22 22 C 1.38233 * 120.00375 * 89.99604 * 21 20 19 23 23 C 1.38233 * 120.00329 * 179.97438 * 22 21 20 24 24 C 1.38234 * 119.99869 * 359.97149 * 23 22 21 25 25 C 1.38236 * 120.00005 * 0.28439 * 24 23 22 26 26 C 1.38236 * 119.99839 * 269.97616 * 21 20 19 27 27 H 1.09000 * 109.46879 * 269.99665 * 1 2 3 28 28 H 1.08995 * 109.46893 * 29.99813 * 1 2 3 29 29 H 1.09000 * 109.47055 * 149.99746 * 1 2 3 30 30 H 1.08999 * 109.47252 * 35.55596 * 3 2 1 31 31 H 1.09009 * 109.46957 * 155.55449 * 3 2 1 32 32 H 0.96998 * 119.99615 * 179.97438 * 7 6 4 33 33 H 0.97000 * 119.99959 * 242.74012 * 15 12 2 34 34 H 1.09006 * 109.46868 * 44.42449 * 16 15 12 35 35 H 1.08999 * 109.47108 * 284.43032 * 16 15 12 36 36 H 1.08993 * 109.47615 * 60.00317 * 17 16 15 37 37 H 1.09007 * 109.47298 * 299.99953 * 17 16 15 38 38 H 1.09001 * 109.46594 * 59.99837 * 18 17 16 39 39 H 1.08999 * 109.46914 * 300.00339 * 18 17 16 40 40 H 1.08998 * 109.47477 * 59.99645 * 19 18 17 41 41 H 1.09007 * 109.47298 * 299.99733 * 19 18 17 42 42 H 1.08998 * 109.47510 * 59.99311 * 20 19 18 43 43 H 1.09002 * 109.46741 * 299.99431 * 20 19 18 44 44 H 1.08003 * 119.99669 * 359.97438 * 22 21 20 45 45 H 1.08000 * 120.00193 * 180.02562 * 23 22 21 46 46 H 1.07997 * 120.00216 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.99963 * 179.71984 * 25 24 23 48 48 H 1.08001 * 120.00158 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3296 1.7726 -1.4141 5 1 1.8419 1.2475 -2.2221 6 6 3.0730 2.9038 -1.6763 7 7 3.1878 3.3437 -2.9103 8 14 3.9170 3.8114 -0.2787 9 1 5.2823 3.2609 -0.0841 10 1 4.0083 5.2560 -0.6105 11 1 3.1312 3.6390 0.9695 12 16 2.2930 -1.4341 0.0006 13 8 3.5996 -1.1434 -0.4764 14 8 1.4380 -2.3914 -0.6094 15 7 2.4649 -1.9003 1.5803 16 6 1.2802 -2.1933 2.3907 17 6 1.6988 -2.9572 3.6484 18 6 0.4613 -3.2637 4.4946 19 6 0.8800 -4.0270 5.7526 20 6 -0.3574 -4.3341 6.5984 21 6 0.0550 -5.0854 7.8379 22 6 0.3846 -4.3933 8.9882 23 6 0.7624 -5.0825 10.1253 24 6 0.8101 -6.4640 10.1123 25 6 0.4856 -7.1560 8.9605 26 6 0.1033 -6.4669 7.8247 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6552 2.0014 0.5976 31 1 3.1894 1.1155 0.4253 32 1 3.7105 4.1398 -3.0947 33 1 3.3501 -1.9793 1.9691 34 1 0.5847 -2.8006 1.8113 35 1 0.7958 -1.2597 2.6769 36 1 2.3941 -2.3499 4.2279 37 1 2.1831 -3.8908 3.3622 38 1 -0.2337 -3.8712 3.9149 39 1 -0.0234 -2.3303 4.7807 40 1 1.5749 -3.4192 6.3320 41 1 1.3650 -4.9605 5.4667 42 1 -1.0520 -4.9421 6.0187 43 1 -0.8427 -3.4009 6.8843 44 1 0.3469 -3.3140 8.9984 45 1 1.0195 -4.5418 11.0241 46 1 1.1048 -7.0025 11.0008 47 1 0.5272 -8.2351 8.9490 48 1 -0.1549 -7.0077 6.9262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067951337.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:17 Heat of formation + Delta-G solvation = -98.107413 kcal Electronic energy + Delta-G solvation = -26423.259825 eV Core-core repulsion = 22602.963086 eV Total energy + Delta-G solvation = -3820.296739 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.15634 -38.34831 -37.71178 -37.26779 -36.85512 -35.71878 -34.50390 -32.99203 -31.72497 -30.26636 -29.86647 -26.81166 -26.37265 -23.83880 -23.43929 -23.41877 -22.07737 -21.57449 -20.29814 -19.15809 -18.66203 -18.17451 -17.57942 -17.42630 -16.80125 -16.52370 -16.03609 -15.99623 -15.94532 -15.31138 -14.89470 -14.60769 -14.50337 -14.44696 -14.31370 -14.20922 -14.04239 -13.62794 -13.41371 -13.26522 -13.16833 -13.10209 -13.07897 -12.97704 -12.82380 -12.34829 -12.25359 -12.19086 -12.09051 -11.98827 -11.92572 -11.71430 -11.70279 -11.43973 -11.31227 -10.78071 -10.43810 -9.78613 -9.76233 -9.53052 -8.29251 -6.35211 -0.33913 0.49587 0.53505 1.36854 1.41615 1.49621 2.05401 2.35885 2.65727 2.91650 3.05273 3.44364 3.77956 3.97379 3.99808 4.06404 4.11818 4.15219 4.22330 4.32781 4.34781 4.51290 4.60169 4.62654 4.68105 4.69966 4.73534 4.77860 4.83661 4.90132 4.96604 5.02542 5.05913 5.09554 5.12629 5.22945 5.24169 5.32839 5.38828 5.46991 5.48755 5.56280 5.62465 5.66842 5.73843 5.79686 6.15504 6.17884 6.31613 6.68074 7.28213 8.88263 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.001832 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.625635 B =15279.065543 C =15946.866438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.999 5.999 3 C 0.235 3.765 4 C -0.547 4.547 5 H 0.028 0.972 6 C 0.006 3.994 7 N -0.948 5.948 8 Si 0.945 3.055 9 H -0.271 1.271 10 H -0.279 1.279 11 H -0.227 1.227 12 S 2.797 3.203 13 O -1.013 7.013 14 O -1.012 7.012 15 N -1.118 6.118 16 C 0.108 3.892 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.107 4.107 20 C -0.080 4.080 21 C -0.091 4.091 22 C -0.132 4.132 23 C -0.130 4.130 24 C -0.139 4.139 25 C -0.130 4.130 26 C -0.133 4.133 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.268 0.732 33 H 0.423 0.577 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.131 0.869 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.035 -17.305 29.514 35.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.840 5.840 3 C 0.111 3.889 4 C -0.586 4.586 5 H 0.046 0.954 6 C -0.192 4.192 7 N -0.588 5.588 8 Si 0.766 3.234 9 H -0.196 1.196 10 H -0.204 1.204 11 H -0.149 1.149 12 S 2.805 3.195 13 O -0.997 6.997 14 O -0.996 6.996 15 N -0.882 5.882 16 C -0.017 4.017 17 C -0.160 4.160 18 C -0.154 4.154 19 C -0.144 4.144 20 C -0.117 4.117 21 C -0.091 4.091 22 C -0.150 4.150 23 C -0.148 4.148 24 C -0.157 4.157 25 C -0.148 4.148 26 C -0.151 4.151 27 H 0.104 0.896 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.258 0.742 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.149 0.851 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.874 -17.626 28.549 34.463 hybrid contribution 0.847 0.675 0.040 1.084 sum -7.028 -16.951 28.589 33.971 Atomic orbital electron populations 1.21654 0.77825 1.03509 1.02993 1.57288 1.15847 1.21384 1.89513 1.19199 0.92040 0.82397 0.95307 1.21754 1.31818 1.11002 0.94059 0.95363 1.25969 0.96499 0.98085 0.98669 1.70074 1.42137 1.24935 1.21700 0.85769 0.79700 0.77556 0.80333 1.19627 1.20422 1.14928 1.01217 0.71946 0.72565 0.73773 1.93571 1.41177 1.85194 1.79793 1.93502 1.69149 1.61162 1.75741 1.55755 1.15802 1.84966 1.31697 1.21577 0.86172 1.00832 0.93116 1.21759 0.99293 1.00475 0.94446 1.21539 0.96989 1.01248 0.95582 1.21490 0.97137 1.00268 0.95536 1.20641 0.97991 1.00146 0.92911 1.20166 0.98894 0.94093 0.95914 1.21319 1.00090 1.00594 0.93003 1.21446 0.99607 0.94830 0.98881 1.21442 1.00601 0.94754 0.98920 1.21442 0.99204 1.00848 0.93292 1.21318 1.00681 0.94103 0.99001 0.89593 0.91397 0.91130 0.92501 0.94674 0.92361 0.74157 0.90849 0.90324 0.90507 0.91305 0.91114 0.90572 0.91983 0.92288 0.90459 0.90276 0.85137 0.84706 0.84693 0.84751 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.64 10.69 127.77 1.37 4.00 16 2 N -1.00 -38.72 3.23 -543.24 -1.75 -40.47 16 3 C 0.24 10.71 4.16 85.63 0.36 11.06 16 4 C -0.55 -31.95 9.93 25.60 0.25 -31.70 16 5 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 6 C 0.01 0.33 5.47 84.66 0.46 0.79 16 7 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 8 Si 0.94 42.90 27.37 68.60 1.88 44.78 16 9 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.23 -8.83 6.69 99.48 0.67 -8.16 16 12 S 2.80 105.87 6.09 -56.49 -0.34 105.53 16 13 O -1.01 -48.07 16.99 -128.00 -2.18 -50.25 16 14 O -1.01 -41.40 16.34 -128.00 -2.09 -43.49 16 15 N -1.12 -28.11 6.05 -187.49 -1.13 -29.24 16 16 C 0.11 2.02 6.26 86.38 0.54 2.56 16 17 C -0.12 -1.64 5.36 30.60 0.16 -1.48 16 18 C -0.12 -1.22 5.21 30.60 0.16 -1.06 16 19 C -0.11 -1.14 5.20 30.59 0.16 -0.98 16 20 C -0.08 -0.83 5.34 29.85 0.16 -0.67 16 21 C -0.09 -1.20 5.13 -19.87 -0.10 -1.31 16 22 C -0.13 -1.73 9.70 22.27 0.22 -1.51 16 23 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 24 C -0.14 -1.69 10.05 22.27 0.22 -1.46 16 25 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 26 C -0.13 -1.76 9.70 22.27 0.22 -1.55 16 27 H 0.09 1.85 8.06 -2.39 -0.02 1.83 16 28 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 29 H 0.07 2.14 7.05 -2.39 -0.02 2.12 16 30 H 0.06 2.32 7.51 -2.39 -0.02 2.30 16 31 H 0.04 1.58 6.66 -2.38 -0.02 1.57 16 32 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 33 H 0.42 9.02 8.66 -96.75 -0.84 8.18 16 34 H 0.07 1.43 7.79 -2.38 -0.02 1.41 16 35 H 0.08 1.25 8.06 -2.39 -0.02 1.23 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 43 H 0.08 0.73 8.08 -2.39 -0.02 0.71 16 44 H 0.13 1.34 8.06 -2.91 -0.02 1.31 16 45 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 46 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 47 H 0.13 1.16 8.06 -2.91 -0.02 1.14 16 48 H 0.13 1.37 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -80.18 406.77 -0.65 -80.83 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.05 Total: 18.52 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: 4.62 Total: -26.08 kcal Atomic # 7 Polarization: -127.25 SS G_CDS: -2.59 Total: -129.83 kcal Atomic # 8 Polarization: -89.47 SS G_CDS: -4.27 Total: -93.74 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.88 Total: 44.78 kcal Atomic # 16 Polarization: 105.87 SS G_CDS: -0.34 Total: 105.53 kcal Total: -80.18 -0.65 -80.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067951337.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.279 kcal (2) G-P(sol) polarization free energy of solvation -80.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds