Wall clock time and date at job start Sat Apr 11 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46504 * 119.99776 * 2 1 4 4 C 1.53001 * 109.47367 * 269.99917 * 3 2 1 5 5 N 1.46504 * 109.46976 * 180.02562 * 4 3 2 6 6 C 1.46494 * 119.99954 * 274.99993 * 5 4 3 7 7 S 1.65603 * 119.99812 * 95.00427 * 5 4 3 8 8 O 1.42098 * 104.27543 * 206.07022 * 7 5 4 9 9 O 1.42108 * 104.27473 * 333.92535 * 7 5 4 10 10 C 1.81402 * 104.45020 * 89.99715 * 7 5 4 11 11 C 1.52995 * 109.46914 * 180.02562 * 10 7 5 12 12 C 1.53001 * 109.47159 * 179.97438 * 11 10 7 13 13 C 1.50695 * 109.47371 * 179.97438 * 12 11 10 14 14 H 1.07998 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99974 * 179.97438 * 13 12 11 16 16 N 1.31508 * 119.99981 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99746 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47160 * 90.00536 * 17 15 13 19 19 H 1.48505 * 109.46995 * 210.00106 * 17 15 13 20 20 H 1.48496 * 109.47487 * 329.99949 * 17 15 13 21 21 C 1.39675 * 120.00236 * 180.02562 * 2 1 3 22 22 C 1.38914 * 120.07317 * 359.97438 * 21 2 1 23 23 C 1.38100 * 119.92419 * 179.97438 * 22 21 2 24 24 C 1.38288 * 120.07489 * 359.97438 * 23 22 21 25 25 C 1.38283 * 120.14964 * 0.27921 * 24 23 22 26 26 C 1.38104 * 120.07445 * 359.44998 * 25 24 23 27 27 H 1.08994 * 109.47097 * 269.99854 * 1 2 3 28 28 H 1.09001 * 109.47265 * 29.99978 * 1 2 3 29 29 H 1.08996 * 109.46960 * 149.99772 * 1 2 3 30 30 H 1.09001 * 109.47060 * 30.00465 * 3 2 1 31 31 H 1.09007 * 109.46721 * 150.00254 * 3 2 1 32 32 H 1.08996 * 109.47038 * 300.00136 * 4 3 2 33 33 H 1.08997 * 109.46498 * 60.00152 * 4 3 2 34 34 H 1.09007 * 109.47030 * 90.00451 * 6 5 4 35 35 H 1.09001 * 109.46923 * 210.00135 * 6 5 4 36 36 H 1.08994 * 109.47336 * 330.00206 * 6 5 4 37 37 H 1.09001 * 109.46640 * 300.00245 * 10 7 5 38 38 H 1.09000 * 109.46734 * 59.99957 * 10 7 5 39 39 H 1.08998 * 109.47102 * 300.00128 * 11 10 7 40 40 H 1.09000 * 109.47514 * 60.00362 * 11 10 7 41 41 H 1.09006 * 109.46998 * 300.00329 * 12 11 10 42 42 H 1.09004 * 109.47077 * 59.99726 * 12 11 10 43 43 H 0.97006 * 120.00376 * 179.97438 * 16 15 13 44 44 H 1.07999 * 120.03435 * 359.97438 * 22 21 2 45 45 H 1.08000 * 119.95830 * 180.02562 * 23 22 21 46 46 H 1.08002 * 119.92149 * 179.97438 * 24 23 22 47 47 H 1.08001 * 119.96059 * 179.69879 * 25 24 23 48 48 H 1.07999 * 120.04050 * 180.27354 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 -1.4425 5 7 3.1855 2.9790 -1.4424 6 6 2.4577 4.2455 -1.3316 7 16 4.8368 2.9811 -1.5676 8 8 5.2345 4.1908 -0.9371 9 8 5.2294 1.7192 -1.0452 10 6 5.1553 3.0584 -3.3518 11 6 6.6649 3.0655 -3.6004 12 6 6.9337 3.1301 -5.1052 13 6 8.4206 3.1378 -5.3502 14 1 9.1054 3.0999 -4.5160 15 6 8.9066 3.1921 -6.6393 16 7 8.0727 3.2377 -7.6551 17 14 10.7498 3.2008 -6.9429 18 1 11.2349 1.8044 -7.0836 19 1 11.0427 3.9544 -8.1885 20 1 11.4370 3.8506 -5.7981 21 6 2.1634 -1.2096 -0.0005 22 6 1.4704 -2.4135 -0.0005 23 6 2.1641 -3.6077 -0.0016 24 6 3.5470 -3.6058 -0.0032 25 6 4.2399 -2.4092 0.0021 26 6 3.5525 -1.2114 -0.0025 27 1 -0.3633 0.0000 1.0276 28 1 -0.3634 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5139 30 1 1.6084 2.0284 0.5139 31 1 3.1499 1.1384 0.5138 32 1 3.0416 0.9509 -1.9563 33 1 1.5001 1.8408 -1.9562 34 1 2.3549 4.5147 -0.2803 35 1 3.0078 5.0276 -1.8548 36 1 1.4690 4.1366 -1.7771 37 1 4.7114 2.1898 -3.8380 38 1 4.7151 3.9680 -3.7603 39 1 7.1092 3.9339 -3.1140 40 1 7.1048 2.1557 -3.1920 41 1 6.4894 2.2615 -5.5913 42 1 6.4938 4.0398 -5.5142 43 1 8.4146 3.2763 -8.5621 44 1 0.3904 -2.4156 0.0003 45 1 1.6259 -4.5440 -0.0020 46 1 4.0869 -4.5412 -0.0036 47 1 5.3199 -2.4113 0.0057 48 1 4.0943 -0.2771 -0.0028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068917564.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:27 Heat of formation + Delta-G solvation = -42.023769 kcal Electronic energy + Delta-G solvation = -27612.531431 eV Core-core repulsion = 23794.666661 eV Total energy + Delta-G solvation = -3817.864770 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.73097 -37.38280 -36.96628 -35.84032 -35.59737 -34.68552 -32.20065 -31.30630 -30.36853 -29.40791 -27.83652 -26.84094 -25.31337 -23.72047 -23.15992 -22.09566 -20.67030 -20.58195 -18.81707 -17.93675 -17.49079 -16.71901 -16.46044 -15.99551 -15.66066 -15.53036 -15.14701 -14.74461 -14.51036 -14.49031 -14.15775 -13.93460 -13.82670 -13.51704 -13.29379 -12.72621 -12.65526 -12.59870 -12.57767 -12.30353 -12.25036 -11.97838 -11.90260 -11.80689 -11.61037 -11.40014 -11.29632 -11.13412 -10.93020 -10.86567 -10.74946 -10.44711 -10.13597 -9.97063 -9.55268 -9.26827 -9.01326 -8.90210 -8.41805 -7.39536 -6.06671 -4.09837 0.36948 1.45681 1.58969 2.56434 3.01091 3.30006 3.36098 3.40119 3.89857 3.94473 4.24964 4.39986 4.43194 4.68758 4.75492 4.82658 4.97181 5.00469 5.09986 5.13448 5.16184 5.21788 5.24679 5.29764 5.32577 5.35131 5.41838 5.49161 5.54775 5.59082 5.70774 5.75458 5.80911 5.88065 6.04704 6.20981 6.27142 6.37900 6.42403 6.50853 6.69058 6.84362 6.85141 7.11627 7.39909 7.55436 7.65131 7.91178 8.31551 8.96370 9.54968 11.04571 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012049 B = 0.002728 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.334927 B =10262.900039 C =11727.188638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.632 5.632 3 C 0.105 3.895 4 C 0.107 3.893 5 N -1.007 6.007 6 C 0.094 3.906 7 S 2.595 3.405 8 O -0.958 6.958 9 O -0.955 6.955 10 C -0.608 4.608 11 C -0.105 4.105 12 C 0.031 3.969 13 C -0.526 4.526 14 H 0.058 0.942 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.272 1.272 21 C 0.208 3.792 22 C -0.200 4.200 23 C -0.080 4.080 24 C -0.179 4.179 25 C -0.071 4.071 26 C -0.191 4.191 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.262 0.738 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.122 0.878 48 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.357 -6.545 15.736 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.345 5.345 3 C -0.020 4.020 4 C -0.020 4.020 5 N -0.844 5.844 6 C -0.051 4.051 7 S 2.691 3.309 8 O -0.948 6.948 9 O -0.945 6.945 10 C -0.740 4.740 11 C -0.145 4.145 12 C -0.007 4.007 13 C -0.565 4.565 14 H 0.076 0.924 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.197 1.197 21 C 0.107 3.893 22 C -0.222 4.222 23 C -0.099 4.099 24 C -0.199 4.199 25 C -0.090 4.090 26 C -0.213 4.213 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.039 0.961 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.140 0.860 48 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.924 -6.378 16.311 25.785 hybrid contribution 0.573 0.091 -1.087 1.232 sum -18.351 -6.287 15.224 24.659 Atomic orbital electron populations 1.21614 0.79705 1.02540 1.01012 1.46315 1.04635 1.02728 1.80774 1.21886 0.98248 0.84902 0.97014 1.21741 0.98027 0.84383 0.97898 1.57635 1.26065 1.11295 1.89376 1.21462 0.97486 0.84036 1.02116 1.05641 0.72190 0.74291 0.78735 1.93570 1.80328 1.47384 1.73556 1.93551 1.80388 1.43089 1.77501 1.30575 1.08708 1.11160 1.23565 1.21502 0.86991 1.01953 1.04044 1.19060 0.96926 0.97689 0.87063 1.21250 0.91916 1.50983 0.92326 0.92354 1.25020 0.98075 0.95077 0.96191 1.69955 1.34292 1.50484 0.98707 0.86554 0.85343 0.78170 0.77750 1.20532 1.21162 1.19722 1.17879 0.91372 0.85479 0.94548 1.20628 0.99312 0.91210 1.11037 1.20837 0.94259 0.97003 0.97781 1.20943 0.94261 0.97891 1.06835 1.20991 0.99854 0.91879 0.96274 1.21105 0.92182 0.99925 1.08055 0.93537 0.91638 0.91329 0.90505 0.89557 0.89593 0.90337 0.92487 0.90810 0.91170 0.85503 0.85543 0.91627 0.91522 0.96128 0.96162 0.92882 0.86367 0.86547 0.86671 0.86010 0.84317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.19 59.85 0.61 1.23 16 2 N -0.63 -6.07 3.01 -179.62 -0.54 -6.61 16 3 C 0.10 1.02 5.48 -4.04 -0.02 1.00 16 4 C 0.11 1.04 5.60 -4.04 -0.02 1.01 16 5 N -1.01 -10.70 3.12 -121.76 -0.38 -11.08 16 6 C 0.09 0.79 10.24 59.84 0.61 1.40 16 7 S 2.59 37.36 5.32 -107.50 -0.57 36.78 16 8 O -0.96 -16.40 17.09 -57.54 -0.98 -17.38 16 9 O -0.96 -15.59 15.92 -57.54 -0.92 -16.50 16 10 C -0.61 -9.35 6.18 37.16 0.23 -9.12 16 11 C -0.11 -2.14 5.16 -26.73 -0.14 -2.27 16 12 C 0.03 0.78 4.97 -27.88 -0.14 0.65 16 13 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 14 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 17 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C 0.21 2.40 6.55 -83.79 -0.55 1.85 16 22 C -0.20 -2.06 9.21 -39.38 -0.36 -2.42 16 23 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 24 C -0.18 -1.95 10.04 -39.55 -0.40 -2.35 16 25 C -0.07 -0.87 10.04 -39.61 -0.40 -1.27 16 26 C -0.19 -2.48 9.21 -39.38 -0.36 -2.84 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.33 8.07 -51.93 -0.42 -0.09 16 29 H 0.07 0.41 6.20 -51.93 -0.32 0.09 16 30 H 0.08 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.09 1.00 5.96 -51.92 -0.31 0.69 16 32 H 0.09 0.94 7.60 -51.93 -0.39 0.55 16 33 H 0.08 0.60 7.96 -51.93 -0.41 0.18 16 34 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.07 0.62 7.79 -51.93 -0.40 0.22 16 36 H 0.07 0.41 7.94 -51.93 -0.41 0.00 16 37 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.12 0.97 6.14 -52.49 -0.32 0.65 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 48 H 0.14 1.95 5.30 -52.49 -0.28 1.67 16 LS Contribution 402.48 15.07 6.07 6.07 Total: -1.00 -34.56 402.48 -11.24 -45.81 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -7.89 Total: 0.19 kcal Atomic # 6 Polarization: -26.22 SS G_CDS: -1.75 Total: -27.97 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: -0.18 Total: -43.57 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -1.90 Total: -33.88 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 37.36 SS G_CDS: -0.57 Total: 36.78 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.56 -11.24 -45.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068917564.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.785 kcal (2) G-P(sol) polarization free energy of solvation -34.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds