Wall clock time and date at job start Sat Apr 11 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46492 * 119.99837 * 2 1 4 4 C 1.50700 * 109.47310 * 269.99512 * 3 2 1 5 5 H 1.08004 * 119.99960 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00452 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99794 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00377 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47060 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.46891 * 120.00132 * 8 6 4 11 11 H 1.48491 * 109.47348 * 240.00272 * 8 6 4 12 12 C 1.34783 * 119.99865 * 179.97438 * 2 1 3 13 13 O 1.21279 * 119.99504 * 180.02562 * 12 2 1 14 14 C 1.50697 * 119.99944 * 0.02562 * 12 2 1 15 15 N 1.46504 * 109.46772 * 179.97438 * 14 12 2 16 16 C 1.34782 * 119.99870 * 179.97438 * 15 14 12 17 17 O 1.21274 * 119.99918 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99995 * 179.97438 * 16 15 14 19 19 C 1.50692 * 109.47307 * 180.02562 * 18 16 15 20 20 C 1.36126 * 120.17475 * 264.72629 * 19 18 16 21 21 C 1.39326 * 120.99691 * 180.32288 * 20 19 18 22 22 C 1.36133 * 120.98585 * 359.92630 * 21 20 19 23 23 C 1.40506 * 119.64915 * 0.04221 * 22 21 20 24 24 C 1.40545 * 121.27499 * 180.02562 * 23 22 21 25 25 C 1.36087 * 119.64756 * 179.97438 * 24 23 22 26 26 C 1.39378 * 120.99501 * 0.02562 * 25 24 23 27 27 C 1.36094 * 120.99655 * 359.95499 * 26 25 24 28 28 C 1.40505 * 120.17411 * 84.99927 * 19 18 16 29 29 H 1.09006 * 109.47373 * 269.99781 * 1 2 3 30 30 H 1.08995 * 109.47555 * 30.00025 * 1 2 3 31 31 H 1.09003 * 109.47092 * 150.00063 * 1 2 3 32 32 H 1.08997 * 109.47636 * 30.00172 * 3 2 1 33 33 H 1.09003 * 109.47433 * 149.99919 * 3 2 1 34 34 H 0.96998 * 120.00036 * 180.02562 * 7 6 4 35 35 H 1.08991 * 109.47670 * 60.00001 * 14 12 2 36 36 H 1.09000 * 109.47307 * 299.99113 * 14 12 2 37 37 H 0.97000 * 120.00077 * 0.02562 * 15 14 12 38 38 H 1.09005 * 109.46903 * 60.00145 * 18 16 15 39 39 H 1.09005 * 109.47132 * 300.00545 * 18 16 15 40 40 H 1.08006 * 119.50105 * 0.27486 * 20 19 18 41 41 H 1.08001 * 119.51155 * 179.97438 * 21 20 19 42 42 H 1.07997 * 120.17487 * 180.02562 * 22 21 20 43 43 H 1.07997 * 120.18005 * 359.95770 * 24 23 22 44 44 H 1.08005 * 119.50597 * 179.97438 * 25 24 23 45 45 H 1.07998 * 119.50663 * 179.97438 * 26 25 24 46 46 H 1.07996 * 120.17629 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5532 3.6181 -0.6732 8 14 3.4368 3.4175 -3.4339 9 1 2.8589 2.4174 -4.3674 10 1 2.7987 4.7380 -3.6670 11 1 4.8992 3.5262 -3.6676 12 6 2.1389 -1.1673 0.0005 13 8 3.3516 -1.1672 0.0010 14 6 1.3853 -2.4723 0.0005 15 7 2.3374 -3.5858 0.0005 16 6 1.8881 -4.8566 0.0010 17 8 0.6958 -5.0782 0.0010 18 6 2.8674 -6.0020 0.0005 19 6 2.1140 -7.3071 0.0006 20 6 1.8661 -7.9539 1.1724 21 6 1.1770 -9.1647 1.1918 22 6 0.7302 -9.7353 0.0395 23 6 0.9667 -9.0968 -1.1896 24 6 0.5204 -9.6551 -2.3997 25 6 0.7672 -9.0080 -3.5711 26 6 1.4578 -7.7975 -3.5907 27 6 1.9047 -7.2268 -2.4389 28 6 1.6687 -7.8656 -1.2094 29 1 -0.3634 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5138 33 1 3.1498 1.1384 0.5138 34 1 4.0293 4.4443 -0.8504 35 1 0.7590 -2.5303 -0.8896 36 1 0.7584 -2.5299 0.8903 37 1 3.2911 -3.4086 0.0009 38 1 3.4947 -5.9441 0.8900 39 1 3.4935 -5.9443 -0.8900 40 1 2.2094 -7.5224 2.1011 41 1 0.9938 -9.6575 2.1352 42 1 0.1971 -10.6741 0.0698 43 1 -0.0154 -10.5928 -2.4000 44 1 0.4235 -9.4393 -4.4998 45 1 1.6408 -7.3047 -4.5341 46 1 2.4380 -6.2882 -2.4694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072615608.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:30 Heat of formation + Delta-G solvation = -27.672158 kcal Electronic energy + Delta-G solvation = -28077.914992 eV Core-core repulsion = 24125.228604 eV Total energy + Delta-G solvation = -3952.686388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85541 -39.74688 -38.72336 -36.70227 -35.11814 -34.24865 -33.94330 -32.67560 -30.59186 -30.44797 -29.07343 -27.84201 -26.61083 -25.53348 -23.53158 -23.15709 -22.75572 -21.41021 -20.24699 -18.84328 -17.72727 -17.35090 -17.20173 -16.64112 -16.51436 -16.13226 -15.66756 -15.61706 -15.05588 -14.87039 -14.42669 -14.35943 -14.20725 -13.78359 -13.66249 -13.44181 -13.27073 -13.07779 -12.84844 -12.52793 -12.28408 -12.18645 -12.07707 -11.89166 -11.85099 -11.49040 -11.27491 -11.11318 -10.95172 -10.93197 -10.66193 -10.23658 -10.15887 -9.82712 -9.69210 -9.16679 -9.08569 -8.75958 -8.49997 -8.02225 -7.79187 -6.10769 -4.15852 0.34263 0.86968 1.85564 2.60815 2.78869 3.12734 3.19640 3.25979 3.33845 3.38231 3.88536 3.99567 4.26694 4.39472 4.54790 4.61610 4.71141 4.80320 4.85955 4.94648 4.99138 5.02667 5.18368 5.19738 5.24237 5.31311 5.32391 5.44530 5.49936 5.58589 5.65594 5.78226 5.87749 5.93103 6.03422 6.06816 6.15913 6.25536 6.34295 6.36084 6.46184 6.64750 6.83941 6.93103 7.33084 7.39971 7.54163 7.84832 8.14862 8.16236 8.28424 8.75584 8.92249 9.49447 10.97426 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.002169 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.334034 B =12906.487354 C =13760.625679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.595 5.595 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.499 3.501 13 O -0.541 6.541 14 C 0.100 3.900 15 N -0.715 5.715 16 C 0.515 3.485 17 O -0.534 6.534 18 C -0.106 4.106 19 C -0.047 4.047 20 C -0.106 4.106 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.051 4.051 24 C -0.108 4.108 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.102 4.102 28 C -0.034 4.034 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.045 0.955 34 H 0.263 0.737 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.412 0.588 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.460 -26.089 0.929 26.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.327 5.327 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.284 3.716 13 O -0.420 6.420 14 C -0.027 4.027 15 N -0.370 5.370 16 C 0.301 3.699 17 O -0.411 6.411 18 C -0.146 4.146 19 C -0.048 4.048 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.128 4.128 23 C -0.051 4.051 24 C -0.126 4.126 25 C -0.135 4.135 26 C -0.135 4.135 27 C -0.120 4.120 28 C -0.034 4.034 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.250 0.750 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.143 0.857 44 H 0.139 0.861 45 H 0.140 0.860 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.591 -26.012 0.974 26.624 hybrid contribution 0.467 0.682 -0.977 1.280 sum -5.123 -25.331 -0.003 25.844 Atomic orbital electron populations 1.21734 0.80953 1.03017 1.00873 1.48119 1.06487 1.07624 1.70436 1.19359 0.92605 0.77788 0.97728 1.21441 1.36639 1.06376 0.92174 0.92374 1.24944 0.95300 0.96350 0.97539 1.69939 1.38316 1.14306 1.30713 0.86425 0.78094 0.78363 0.84437 1.19792 1.20911 1.20835 1.20190 0.88152 0.85241 0.77995 1.90654 1.13642 1.86823 1.50863 1.21161 0.92260 0.85319 1.03955 1.45773 1.11501 1.04650 1.75111 1.20409 0.89693 0.83378 0.76468 1.90727 1.16608 1.84698 1.49051 1.20697 0.97664 0.90357 1.05879 1.19086 0.98347 0.94519 0.92839 1.20698 0.98917 0.95399 0.97403 1.20788 0.98222 0.95693 0.98326 1.20994 1.00176 0.99841 0.91741 1.18045 0.98577 0.94511 0.93984 1.20996 0.99989 0.99897 0.91762 1.20846 0.98976 0.95573 0.98136 1.20863 0.98407 0.95863 0.98410 1.21059 0.99763 0.99366 0.91784 1.17849 0.98067 0.94277 0.93218 0.93277 0.90354 0.92171 0.94705 0.93679 0.92691 0.88939 0.89054 0.74969 0.87398 0.87533 0.85956 0.85922 0.85706 0.85703 0.86072 0.85960 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.20 10.24 59.85 0.61 1.81 16 2 N -0.60 -12.16 2.86 -182.96 -0.52 -12.68 16 3 C 0.24 6.21 5.16 -5.20 -0.03 6.18 16 4 C -0.53 -14.63 9.39 -34.44 -0.32 -14.96 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.50 9.79 7.74 -10.98 -0.09 9.71 16 13 O -0.54 -12.51 15.25 5.56 0.08 -12.42 16 14 C 0.10 1.52 4.71 -5.19 -0.02 1.50 16 15 N -0.71 -9.90 5.53 -61.47 -0.34 -10.24 16 16 C 0.51 6.88 7.82 -10.98 -0.09 6.79 16 17 O -0.53 -8.94 16.03 5.56 0.09 -8.85 16 18 C -0.11 -1.06 5.22 -29.04 -0.15 -1.21 16 19 C -0.05 -0.54 4.38 -104.53 -0.46 -0.99 16 20 C -0.11 -1.08 9.57 -39.94 -0.38 -1.46 16 21 C -0.11 -1.03 9.95 -39.93 -0.40 -1.43 16 22 C -0.11 -1.03 9.77 -39.48 -0.39 -1.42 16 23 C -0.05 -0.57 5.74 -106.83 -0.61 -1.18 16 24 C -0.11 -1.02 9.77 -39.49 -0.39 -1.40 16 25 C -0.12 -1.07 9.95 -39.93 -0.40 -1.47 16 26 C -0.12 -1.17 9.95 -39.93 -0.40 -1.57 16 27 C -0.10 -1.15 9.28 -39.48 -0.37 -1.52 16 28 C -0.03 -0.41 5.74 -106.83 -0.61 -1.02 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.23 8.07 -51.93 -0.42 0.81 16 31 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 32 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 33 H 0.05 1.29 7.42 -51.93 -0.39 0.90 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.09 1.36 7.40 -51.93 -0.38 0.97 16 36 H 0.09 1.28 8.11 -51.93 -0.42 0.85 16 37 H 0.41 5.55 7.44 -40.82 -0.30 5.24 16 38 H 0.11 0.82 8.04 -51.93 -0.42 0.40 16 39 H 0.11 0.88 6.72 -51.93 -0.35 0.54 16 40 H 0.12 1.02 8.05 -52.48 -0.42 0.59 16 41 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 46 H 0.12 1.29 6.49 -52.49 -0.34 0.95 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -35.19 390.44 -9.95 -45.13 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.28 Total: 4.07 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -4.58 Total: -2.03 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.13 Total: -48.30 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.17 Total: -21.27 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.19 -9.95 -45.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072615608.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.463 kcal (2) G-P(sol) polarization free energy of solvation -35.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds