Wall clock time and date at job start Sat Apr 11 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34769 * 120.00082 * 2 1 4 4 O 1.21556 * 120.00288 * 359.97438 * 3 2 1 5 5 C 1.47850 * 119.99905 * 179.97438 * 3 2 1 6 6 C 1.39578 * 120.14362 * 180.02562 * 5 3 2 7 7 C 1.37952 * 119.85480 * 180.02562 * 6 5 3 8 8 C 1.38363 * 120.14196 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.85244 * 179.97438 * 8 7 6 10 10 N 1.46908 * 109.46848 * 90.00142 * 9 8 7 11 11 C 1.46903 * 110.99867 * 180.02562 * 10 9 8 12 12 C 1.50699 * 109.47107 * 179.97438 * 11 10 9 13 13 C 1.38328 * 119.96224 * 270.02211 * 12 11 10 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99605 * 12 11 10 27 27 C 1.38359 * 120.29477 * 0.22900 * 8 7 6 28 28 C 1.37955 * 120.14128 * 359.49480 * 27 8 7 29 29 H 1.08996 * 109.47206 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46830 * 300.00241 * 1 2 3 31 31 H 1.09007 * 109.47033 * 60.00160 * 1 2 3 32 32 H 0.96998 * 119.99642 * 179.97438 * 2 1 3 33 33 H 1.08003 * 120.07192 * 359.97438 * 6 5 3 34 34 H 1.07998 * 119.93080 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47201 * 330.00510 * 9 8 7 36 36 H 1.08997 * 109.47348 * 209.99509 * 9 8 7 37 37 H 1.00893 * 110.99912 * 56.04460 * 10 9 8 38 38 H 1.09004 * 109.46952 * 59.99542 * 11 10 9 39 39 H 1.08998 * 109.46757 * 300.00157 * 11 10 9 40 40 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 41 41 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 42 42 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 43 43 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 44 44 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 45 45 H 1.07997 * 119.92929 * 179.74311 * 27 8 7 46 46 H 1.07999 * 120.07421 * 180.24824 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5312 2.2199 -0.0005 5 6 3.6174 1.1671 0.0006 6 6 4.3184 2.3741 0.0011 7 6 5.6979 2.3671 0.0011 8 6 6.3866 1.1670 0.0000 9 6 7.8936 1.1670 -0.0005 10 7 8.3838 1.1660 1.3844 11 6 9.8523 1.1666 1.4230 12 6 10.3171 1.1662 2.8566 13 6 10.5292 2.3644 3.5143 14 6 10.9551 2.3682 4.8299 15 6 11.1638 1.1748 5.4932 16 6 10.9572 -0.0296 4.8339 17 8 11.1672 -1.2042 5.4813 18 6 11.6907 -1.1343 6.7218 19 1 11.8472 -0.1730 7.1885 20 6 12.0280 -2.2966 7.3984 21 7 11.8377 -3.4675 6.8298 22 14 12.7539 -2.1997 9.1169 23 1 11.6585 -2.2294 10.1192 24 1 13.6587 -3.3563 9.3381 25 1 13.5214 -0.9365 9.2596 26 6 10.5301 -0.0301 3.5121 27 6 5.6978 -0.0329 -0.0058 28 6 4.3183 -0.0399 -0.0001 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.9500 -0.8401 0.0004 33 1 3.7819 3.3115 0.0007 34 1 6.2415 3.3003 0.0011 35 1 8.2568 2.0573 -0.5138 36 1 8.2568 0.2774 -0.5150 37 1 8.0084 0.3844 1.9002 38 1 10.2287 2.0572 0.9196 39 1 10.2293 0.2772 0.9181 40 1 10.3618 3.2989 2.9994 41 1 11.1203 3.3053 5.3407 42 1 11.4915 1.1785 6.5223 43 1 12.0741 -4.2806 7.3030 44 1 10.3647 -0.9653 2.9979 45 1 6.2414 -0.9661 -0.0108 46 1 3.7818 -0.9772 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079070440.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:37 Heat of formation + Delta-G solvation = -11.614265 kcal Electronic energy + Delta-G solvation = -26954.434864 eV Core-core repulsion = 23002.444798 eV Total energy + Delta-G solvation = -3951.990066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.49030 -39.15658 -38.81735 -37.02442 -35.53478 -35.04150 -32.45734 -32.19671 -31.25853 -30.27953 -29.03415 -27.65121 -26.04375 -25.26725 -23.91757 -22.93568 -22.18420 -21.58061 -20.73622 -20.52416 -18.58985 -17.71834 -17.10189 -16.57686 -15.94839 -15.56851 -15.51737 -15.22364 -15.07641 -14.90768 -14.77565 -14.42476 -14.23230 -13.93352 -13.77942 -13.57418 -13.44419 -13.38684 -12.81344 -12.67120 -12.60588 -12.51607 -12.10973 -11.86403 -11.71252 -11.56755 -11.27934 -11.25475 -10.81831 -10.70263 -10.61751 -10.43501 -10.29957 -9.58156 -9.35307 -9.25192 -9.11140 -8.84619 -8.47303 -8.08120 -7.23406 -6.45442 -4.04592 0.53468 1.11852 2.08537 2.38343 2.56717 2.82536 3.12174 3.13165 3.17831 3.56312 3.96006 4.22936 4.35542 4.45246 4.60036 4.67156 4.71704 4.82679 4.99834 5.06846 5.09790 5.10734 5.15738 5.26851 5.33245 5.38709 5.43441 5.54780 5.57860 5.73874 5.75443 5.82778 5.93897 5.96363 5.99038 6.07680 6.18371 6.30655 6.32514 6.59717 6.64472 6.88549 6.94592 7.06559 7.07043 7.24164 7.37402 7.39340 7.42667 7.81772 7.84431 7.99637 9.00603 9.70694 10.72754 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013001 B = 0.001871 C = 0.001733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.137256 B =14964.520180 C =16156.807733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.559 3.441 4 O -0.538 6.538 5 C -0.142 4.142 6 C -0.059 4.059 7 C -0.104 4.104 8 C -0.050 4.050 9 C 0.091 3.909 10 N -0.678 5.678 11 C 0.106 3.894 12 C -0.049 4.049 13 C -0.188 4.188 14 C -0.077 4.077 15 C -0.230 4.230 16 C 0.152 3.848 17 O -0.180 6.180 18 C -0.391 4.391 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.184 4.184 27 C -0.121 4.121 28 C -0.086 4.086 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.402 0.598 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.347 0.653 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.269 0.731 44 H 0.112 0.888 45 H 0.128 0.872 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.562 6.066 -15.827 22.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.386 5.386 3 C 0.347 3.653 4 O -0.416 6.416 5 C -0.145 4.145 6 C -0.078 4.078 7 C -0.123 4.123 8 C -0.051 4.051 9 C -0.037 4.037 10 N -0.309 5.309 11 C -0.022 4.022 12 C -0.049 4.049 13 C -0.207 4.207 14 C -0.096 4.096 15 C -0.249 4.249 16 C 0.099 3.901 17 O -0.084 6.084 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.165 4.165 21 N -0.500 5.500 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.204 4.204 27 C -0.139 4.139 28 C -0.104 4.104 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.237 0.763 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.102 0.898 36 H 0.060 0.940 37 H 0.166 0.834 38 H 0.096 0.904 39 H 0.055 0.945 40 H 0.124 0.876 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.130 0.870 45 H 0.146 0.854 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.072 7.005 -15.774 22.914 hybrid contribution 0.747 -1.357 0.786 1.737 sum -14.325 5.647 -14.988 21.488 Atomic orbital electron populations 1.21562 0.79183 1.02386 1.02514 1.45720 1.07949 1.08720 1.76178 1.18379 0.87418 0.83655 0.75806 1.90772 1.70034 1.31180 1.49572 1.19858 0.92316 0.94743 1.07628 1.21268 0.93935 0.97589 0.95044 1.21061 0.93491 0.98201 0.99505 1.20073 0.95661 0.93137 0.96193 1.20981 0.89976 1.01701 0.91069 1.60554 1.07985 1.50891 1.11506 1.20815 0.86738 1.00730 0.93879 1.19132 0.98831 0.92780 0.94203 1.20421 1.08414 0.96454 0.95428 1.20754 0.97611 0.96806 0.94404 1.21198 1.10152 0.92149 1.01450 1.19306 0.92877 0.86594 0.91363 1.83972 1.70588 1.24742 1.29085 1.21311 1.41476 0.94672 0.89282 0.89119 1.25275 0.97073 0.94209 0.99983 1.70032 1.44792 0.97438 1.37703 0.85722 0.78884 0.78381 0.80505 1.19891 1.20280 1.19209 1.20020 1.09948 0.97285 0.93170 1.21034 0.93884 0.98050 1.00962 1.21197 0.94503 0.96673 0.98061 0.90484 0.92018 0.92089 0.76296 0.84691 0.84972 0.89846 0.94039 0.83406 0.90446 0.94509 0.87577 0.87474 0.85655 0.92081 0.86955 0.85371 0.85792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 10.70 59.85 0.64 1.16 16 2 N -0.73 -5.41 5.66 -68.04 -0.39 -5.80 16 3 C 0.56 6.09 7.77 -12.33 -0.10 5.99 16 4 O -0.54 -7.75 16.35 5.32 0.09 -7.66 16 5 C -0.14 -1.43 5.87 -104.97 -0.62 -2.05 16 6 C -0.06 -0.62 9.60 -39.19 -0.38 -0.99 16 7 C -0.10 -1.01 9.68 -39.64 -0.38 -1.39 16 8 C -0.05 -0.48 5.40 -104.53 -0.56 -1.04 16 9 C 0.09 0.86 5.81 -4.97 -0.03 0.83 16 10 N -0.68 -8.25 6.48 -116.33 -0.75 -9.00 16 11 C 0.11 1.40 5.81 -4.97 -0.03 1.37 16 12 C -0.05 -0.84 5.39 -104.65 -0.56 -1.41 16 13 C -0.19 -3.23 9.70 -39.53 -0.38 -3.62 16 14 C -0.08 -1.43 10.04 -39.61 -0.40 -1.83 16 15 C -0.23 -5.00 9.17 -39.40 -0.36 -5.36 16 16 C 0.15 3.64 6.65 -39.11 -0.26 3.38 16 17 O -0.18 -5.10 9.76 0.05 0.00 -5.10 16 18 C -0.39 -10.89 9.49 30.89 0.29 -10.60 16 19 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.20 13.67 55.48 0.76 -24.45 16 22 Si 0.94 20.47 29.55 -169.99 -5.02 15.44 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 26 C -0.18 -3.78 9.65 -39.39 -0.38 -4.16 16 27 C -0.12 -1.05 9.68 -39.64 -0.38 -1.43 16 28 C -0.09 -0.70 9.54 -39.19 -0.37 -1.07 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.40 8.14 -51.92 -0.42 -0.03 16 32 H 0.40 1.87 6.86 -40.82 -0.28 1.59 16 33 H 0.14 1.39 7.65 -52.48 -0.40 0.99 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 36 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 37 H 0.35 4.49 8.72 -39.30 -0.34 4.14 16 38 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 39 H 0.04 0.46 8.08 -51.93 -0.42 0.04 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.13 2.73 5.64 -52.49 -0.30 2.44 16 43 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.11 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.13 0.93 8.06 -52.49 -0.42 0.50 16 46 H 0.12 0.64 6.41 -52.49 -0.34 0.30 16 LS Contribution 394.06 15.07 5.94 5.94 Total: -1.00 -33.77 394.06 -9.86 -43.63 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.13 Total: 8.25 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -4.36 Total: -21.25 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.38 Total: -39.25 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.77 -9.86 -43.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079070440.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.016 kcal (2) G-P(sol) polarization free energy of solvation -33.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds