Wall clock time and date at job start Sat Apr 11 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46896 * 110.99626 * 2 1 4 4 C 1.46900 * 110.99779 * 123.95558 * 2 1 3 5 5 H 1.08999 * 109.46431 * 200.91912 * 4 2 1 6 6 C 1.52995 * 109.47314 * 320.91802 * 4 2 1 7 7 N 1.46500 * 109.47273 * 293.13458 * 6 4 2 8 8 S 1.65599 * 120.00122 * 156.30919 * 7 6 4 9 9 O 1.42105 * 104.27636 * 181.07261 * 8 7 6 10 10 O 1.42098 * 104.27910 * 308.92796 * 8 7 6 11 11 C 1.81398 * 104.44847 * 65.00082 * 8 7 6 12 12 C 1.53002 * 109.47343 * 179.97438 * 11 8 7 13 13 C 1.50693 * 109.47409 * 179.97438 * 12 11 8 14 14 H 1.08002 * 119.99892 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00216 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99826 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00290 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.46949 * 90.00201 * 17 15 13 19 19 H 1.48498 * 109.47235 * 210.00714 * 17 15 13 20 20 H 1.48505 * 109.46878 * 330.00789 * 17 15 13 21 21 C 1.52996 * 109.47086 * 80.92078 * 4 2 1 22 22 C 1.50701 * 109.47289 * 61.34942 * 21 4 2 23 23 C 1.38230 * 120.00073 * 84.64973 * 22 21 4 24 24 C 1.38242 * 119.99798 * 180.02562 * 23 22 21 25 25 C 1.38234 * 120.00079 * 359.95656 * 24 23 22 26 26 C 1.38235 * 119.99824 * 0.27173 * 25 24 23 27 27 C 1.38235 * 120.00260 * 359.51680 * 26 25 24 28 28 H 1.08989 * 109.47404 * 302.83439 * 1 2 3 29 29 H 1.09005 * 109.47038 * 62.83918 * 1 2 3 30 30 H 1.09005 * 109.46745 * 182.83011 * 1 2 3 31 31 H 1.09006 * 109.46767 * 174.51585 * 3 2 1 32 32 H 1.09003 * 109.47458 * 294.51235 * 3 2 1 33 33 H 1.08993 * 109.47066 * 54.51748 * 3 2 1 34 34 H 1.09002 * 109.47050 * 53.13120 * 6 4 2 35 35 H 1.08998 * 109.47312 * 173.13475 * 6 4 2 36 36 H 0.97000 * 119.99597 * 336.31266 * 7 6 4 37 37 H 1.08997 * 109.47296 * 299.99942 * 11 8 7 38 38 H 1.08999 * 109.47048 * 59.99664 * 11 8 7 39 39 H 1.08997 * 109.47001 * 300.00274 * 12 11 8 40 40 H 1.09006 * 109.47017 * 59.99557 * 12 11 8 41 41 H 0.97005 * 119.99824 * 180.02562 * 16 15 13 42 42 H 1.08995 * 109.47430 * 301.34588 * 21 4 2 43 43 H 1.09004 * 109.47410 * 181.34879 * 21 4 2 44 44 H 1.07994 * 120.00163 * 359.97438 * 23 22 21 45 45 H 1.07999 * 119.99924 * 179.97438 * 24 23 22 46 46 H 1.07998 * 119.99970 * 180.02562 * 25 24 23 47 47 H 1.08005 * 120.00027 * 179.72314 * 26 25 24 48 48 H 1.07999 * 120.00222 * 180.24791 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 1 3.0218 -0.4589 1.3385 6 6 1.1329 -0.5018 2.3733 7 7 1.2907 0.8939 2.7896 8 16 0.1042 1.6320 3.6784 9 8 0.5826 2.9564 3.8699 10 8 -1.0882 1.3825 2.9469 11 6 0.0876 0.7276 5.2507 12 6 -0.9804 1.3230 6.1703 13 6 -0.9947 0.5712 7.4763 14 1 -0.3101 -0.2490 7.6347 15 6 -1.8810 0.9311 8.4693 16 7 -2.7142 1.9301 8.2765 17 14 -1.8982 -0.0003 10.0884 18 1 -0.9564 0.6430 11.0396 19 1 -3.2694 0.0222 10.6579 20 1 -1.4822 -1.4067 9.8549 21 6 1.9657 -2.2590 0.8046 22 6 2.8418 -2.5243 -0.3926 23 6 4.2004 -2.7168 -0.2257 24 6 5.0041 -2.9596 -1.3240 25 6 4.4489 -3.0107 -2.5890 26 6 3.0910 -2.8134 -2.7563 27 6 2.2866 -2.5750 -1.6576 28 1 -0.3633 0.5571 0.8634 29 1 -0.3633 0.4691 -0.9144 30 1 -0.3633 -1.0265 0.0507 31 1 3.0807 1.3440 0.0982 32 1 1.7276 1.8635 -0.9350 33 1 1.5687 1.9243 0.8368 34 1 0.0869 -0.6935 2.1339 35 1 1.4469 -1.1602 3.1831 36 1 2.0901 1.3856 2.5447 37 1 -0.1378 -0.3223 5.0636 38 1 1.0642 0.8101 5.7276 39 1 -0.7546 2.3727 6.3574 40 1 -1.9572 1.2409 5.6935 41 1 -3.3375 2.1836 8.9753 42 1 0.9427 -2.5609 0.5802 43 1 2.3339 -2.8290 1.6576 44 1 4.6341 -2.6768 0.7625 45 1 6.0656 -3.1097 -1.1937 46 1 5.0768 -3.2008 -3.4469 47 1 2.6579 -2.8489 -3.7451 48 1 1.2251 -2.4249 -1.7879 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111325224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:42 Heat of formation + Delta-G solvation = -47.679473 kcal Electronic energy + Delta-G solvation = -27874.071285 eV Core-core repulsion = 24055.961266 eV Total energy + Delta-G solvation = -3818.110019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.86480 -38.54698 -36.63724 -35.51446 -34.09647 -33.93658 -33.29084 -31.20587 -30.99022 -29.64438 -27.74211 -25.68173 -25.63901 -24.08593 -22.67463 -21.74331 -21.60895 -20.11685 -18.95086 -17.54936 -17.03015 -16.62117 -16.50577 -16.15151 -15.58308 -15.32572 -15.07431 -14.87872 -14.75848 -14.56563 -14.35628 -13.55859 -13.46819 -13.44806 -13.26805 -12.87752 -12.57212 -12.48983 -12.40617 -12.05873 -11.79596 -11.77178 -11.68914 -11.64112 -11.57848 -11.43333 -11.28188 -11.11536 -11.05561 -11.00218 -10.88779 -10.46086 -10.42918 -9.87355 -9.61020 -9.14803 -9.01743 -8.78849 -8.53865 -8.23857 -6.15918 -4.21765 0.71457 1.25675 1.31859 3.05319 3.23556 3.29893 3.32412 3.67828 3.81484 4.16312 4.33959 4.40906 4.62884 4.69538 4.80833 4.84586 4.88526 4.99393 5.03795 5.12456 5.19252 5.23427 5.33685 5.39044 5.42278 5.44218 5.50532 5.56996 5.59846 5.63258 5.73544 5.75852 5.82529 5.85901 5.95299 5.95642 6.09860 6.34848 6.40150 6.42917 6.55007 6.88833 6.90618 6.94292 6.96938 7.25233 7.31205 7.76802 8.13405 8.81558 9.43211 10.95065 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018995 B = 0.002438 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.752858 B =11482.330620 C =12290.155607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.527 5.527 3 C 0.016 3.984 4 C 0.082 3.918 5 H 0.087 0.913 6 C 0.080 3.920 7 N -1.128 6.128 8 S 2.589 3.411 9 O -0.967 6.967 10 O -0.964 6.964 11 C -0.588 4.588 12 C 0.028 3.972 13 C -0.521 4.521 14 H 0.061 0.939 15 C 0.057 3.943 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.279 1.279 19 H -0.284 1.284 20 H -0.273 1.273 21 C -0.073 4.073 22 C -0.059 4.059 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.130 4.130 26 C -0.123 4.123 27 C -0.091 4.091 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.412 0.588 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.265 0.735 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.579 -9.646 -20.182 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 N -0.250 5.250 3 C -0.132 4.132 4 C -0.028 4.028 5 H 0.105 0.895 6 C -0.048 4.048 7 N -0.886 5.886 8 S 2.687 3.313 9 O -0.958 6.958 10 O -0.954 6.954 11 C -0.722 4.722 12 C -0.011 4.011 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.145 4.145 16 N -0.528 5.528 17 Si 0.728 3.272 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.198 1.198 21 C -0.112 4.112 22 C -0.059 4.059 23 C -0.140 4.140 24 C -0.141 4.141 25 C -0.148 4.148 26 C -0.141 4.141 27 C -0.109 4.109 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.246 0.754 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.096 0.904 43 H 0.098 0.902 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.134 0.866 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.894 -9.124 -20.824 26.137 hybrid contribution 0.349 -0.289 1.910 1.963 sum 13.243 -9.413 -18.914 24.935 Atomic orbital electron populations 1.22647 0.87140 1.02262 1.02351 1.62259 1.08354 1.13599 1.40828 1.22553 0.99929 0.89272 1.01466 1.21974 0.98806 0.94004 0.88064 0.89503 1.22076 1.02663 0.82243 0.97859 1.55969 1.38583 1.22266 1.71757 1.05678 0.73430 0.74989 0.77208 1.93559 1.80259 1.35021 1.86929 1.93529 1.46295 1.85936 1.69649 1.30436 1.10415 1.13220 1.18125 1.18960 0.91166 0.96882 0.94072 1.20988 1.19878 1.16799 0.98365 0.92054 1.25077 0.95222 0.95200 0.99026 1.69956 1.21275 1.27423 1.34139 0.86461 0.77476 0.80096 0.83195 1.20449 1.20972 1.19753 1.20623 0.99925 0.94563 0.96043 1.19611 0.93615 0.97944 0.94713 1.21015 0.93402 1.00882 0.98689 1.21058 0.99475 1.00759 0.92857 1.21074 0.95298 1.01294 0.97095 1.21119 0.93930 1.00369 0.98676 1.20970 0.99865 0.98248 0.91845 0.92577 0.91670 0.91493 0.91725 0.91522 0.94544 0.89011 0.91220 0.75382 0.86332 0.86141 0.94910 0.94834 0.92496 0.90428 0.90168 0.86476 0.86598 0.86710 0.86575 0.86241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 8.22 60.07 0.49 0.54 16 2 N -0.53 -5.20 4.31 -243.18 -1.05 -6.24 16 3 C 0.02 0.16 8.89 60.06 0.53 0.70 16 4 C 0.08 0.72 1.98 -67.72 -0.13 0.59 16 5 H 0.09 0.73 7.65 -51.93 -0.40 0.33 16 6 C 0.08 0.81 4.90 -4.04 -0.02 0.79 16 7 N -1.13 -13.50 4.10 -10.61 -0.04 -13.54 16 8 S 2.59 44.19 5.46 -107.50 -0.59 43.60 16 9 O -0.97 -19.63 18.08 -57.54 -1.04 -20.67 16 10 O -0.96 -18.76 15.92 -57.54 -0.92 -19.67 16 11 C -0.59 -10.89 6.01 37.16 0.22 -10.67 16 12 C 0.03 0.71 4.98 -27.89 -0.14 0.57 16 13 C -0.52 -14.24 9.11 -34.44 -0.31 -14.55 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 17 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 C -0.07 -0.57 4.91 -27.88 -0.14 -0.71 16 22 C -0.06 -0.51 4.82 -104.62 -0.50 -1.02 16 23 C -0.12 -1.03 9.72 -39.58 -0.38 -1.42 16 24 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 25 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 26 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 27 C -0.09 -0.82 9.47 -39.58 -0.37 -1.19 16 28 H 0.06 0.74 4.79 -51.93 -0.25 0.49 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.64 6.87 -51.93 -0.36 0.28 16 31 H 0.06 0.57 7.81 -51.93 -0.41 0.16 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.40 5.74 -51.93 -0.30 0.10 16 34 H 0.09 1.01 5.42 -51.93 -0.28 0.73 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.41 4.28 7.12 -34.47 -0.25 4.04 16 37 H 0.12 1.94 8.14 -51.93 -0.42 1.52 16 38 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 39 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.08 0.60 6.99 -51.93 -0.36 0.24 16 43 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 44 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 45 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.11 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.80 8.06 -52.48 -0.42 0.37 16 48 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -34.29 394.45 -11.65 -45.95 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.63 Total: 3.38 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: -2.05 Total: -29.18 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.35 Total: -45.35 kcal Atomic # 8 Polarization: -38.38 SS G_CDS: -1.96 Total: -40.34 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 44.19 SS G_CDS: -0.59 Total: 43.60 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.29 -11.65 -45.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111325224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.731 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds