Wall clock time and date at job start Sat Apr 11 2020 06:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35540 * 117.00056 * 2 1 4 4 C 1.37921 * 119.79021 * 359.97438 * 3 2 1 5 5 C 1.38413 * 121.62106 * 179.81202 * 4 3 2 6 6 C 1.39108 * 120.67858 * 0.44714 * 5 4 3 7 7 C 1.47120 * 120.56228 * 179.81209 * 6 5 4 8 8 O 1.21642 * 119.99883 * 235.10153 * 7 6 5 9 9 N 1.34771 * 120.00038 * 55.10209 * 7 6 5 10 10 C 1.46967 * 120.59768 * 175.99339 * 9 7 6 11 11 C 1.53363 * 108.63891 * 235.20876 * 10 9 7 12 12 N 1.46962 * 108.63373 * 310.57598 * 11 10 9 13 13 C 1.36947 * 120.59127 * 235.22544 * 12 11 10 14 14 H 1.08003 * 119.99911 * 34.79614 * 13 12 11 15 15 C 1.38811 * 119.99871 * 214.79050 * 13 12 11 16 16 N 1.31618 * 120.00117 * 5.48098 * 15 13 12 17 17 Si 1.86804 * 119.99972 * 185.47512 * 15 13 12 18 18 H 1.48499 * 109.47013 * 60.00094 * 17 15 13 19 19 H 1.48493 * 109.47301 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46808 * 300.00463 * 17 15 13 21 21 C 1.46958 * 118.81613 * 55.22436 * 12 11 10 22 22 C 1.46965 * 120.59683 * 355.97393 * 9 7 6 23 23 C 1.46201 * 118.87146 * 359.53870 * 6 5 4 24 24 C 1.39997 * 121.41511 * 180.27892 * 23 6 5 25 25 C 1.36341 * 119.62713 * 179.97438 * 24 23 6 26 26 C 1.39223 * 120.88246 * 0.02562 * 25 24 23 27 27 C 1.36230 * 120.96481 * 359.95518 * 26 25 24 28 28 C 1.40374 * 119.64766 * 0.03814 * 27 26 25 29 29 H 1.09005 * 109.46816 * 60.00004 * 1 2 3 30 30 H 1.08997 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47299 * 300.00355 * 1 2 3 32 32 H 1.07992 * 119.18739 * 0.04757 * 4 3 2 33 33 H 1.07998 * 119.65835 * 180.23248 * 5 4 3 34 34 H 1.09010 * 109.60391 * 354.95291 * 10 9 7 35 35 H 1.09000 * 109.61038 * 115.46078 * 10 9 7 36 36 H 1.09005 * 109.61135 * 70.31748 * 11 10 9 37 37 H 1.09000 * 109.61124 * 190.83037 * 11 10 9 38 38 H 0.97001 * 120.00234 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.61083 * 185.02752 * 21 12 11 40 40 H 1.09000 * 109.74947 * 64.60220 * 21 12 11 41 41 H 1.08992 * 109.61259 * 244.53775 * 22 9 7 42 42 H 1.09000 * 109.60846 * 5.05430 * 22 9 7 43 43 H 1.08003 * 120.18445 * 0.02562 * 24 23 6 44 44 H 1.08003 * 119.56062 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.51608 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.17564 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 1.2890 2.3616 -0.0005 5 6 1.8776 3.6143 0.0033 6 6 3.2623 3.7479 -0.0015 7 6 3.8852 5.0807 -0.0015 8 8 4.6857 5.3779 -0.8679 9 7 3.5691 5.9723 0.9584 10 6 4.2474 7.2745 1.0225 11 6 4.8564 7.4417 2.4201 12 7 3.8268 7.1294 3.4212 13 6 3.5053 8.0356 4.3964 14 1 3.5237 9.0932 4.1780 15 6 3.1558 7.5949 5.6654 16 7 3.2371 6.3154 5.9633 17 14 2.5701 8.8177 6.9504 18 1 1.3480 9.5041 6.4598 19 1 2.2618 8.0994 8.2130 20 1 3.6354 9.8218 7.2000 21 6 3.1485 5.8273 3.3573 22 6 2.5396 5.6601 1.9596 23 6 4.0879 2.5413 -0.0003 24 6 5.4860 2.6138 0.0009 25 6 6.2204 1.4651 0.0025 26 6 5.5987 0.2194 0.0024 27 6 4.2405 0.1139 0.0016 28 6 3.4537 1.2764 0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2117 2.2859 -0.0002 33 1 1.2555 4.4971 0.0066 34 1 5.0374 7.3127 0.2723 35 1 3.5270 8.0717 0.8396 36 1 5.6985 6.7594 2.5363 37 1 5.1943 8.4696 2.5513 38 1 2.9932 6.0075 6.8502 39 1 2.3586 5.7890 4.1075 40 1 3.8668 5.0284 3.5413 41 1 1.6975 6.3423 1.8434 42 1 2.2016 4.6322 1.8285 43 1 5.9799 3.5742 0.0014 44 1 7.2989 1.5222 0.0038 45 1 6.2020 -0.6764 0.0032 46 1 3.7715 -0.8590 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152714037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:54 Heat of formation + Delta-G solvation = 12.172224 kcal Electronic energy + Delta-G solvation = -29850.941258 eV Core-core repulsion = 25899.982652 eV Total energy + Delta-G solvation = -3950.958606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.89032 -39.52409 -38.52366 -36.71206 -35.84836 -33.80401 -32.21633 -31.31544 -30.54144 -30.18860 -28.95894 -27.73903 -26.78942 -24.20924 -23.30796 -23.14027 -22.74980 -22.14768 -20.39286 -18.82228 -18.33442 -17.70256 -17.14107 -16.78735 -16.04214 -15.95327 -15.67381 -15.21122 -14.87002 -14.70738 -14.39612 -13.96441 -13.80440 -13.64814 -13.42008 -13.36370 -13.24530 -13.16695 -12.99532 -12.57552 -12.20442 -12.00502 -11.85965 -11.70776 -11.28544 -11.22297 -10.90932 -10.87609 -10.80335 -10.70270 -10.52271 -10.20210 -10.07687 -9.86749 -9.53742 -9.35897 -8.73359 -8.57758 -8.25379 -7.55412 -6.61547 -5.85633 -3.39719 0.40227 0.95631 1.86735 2.78639 2.94152 3.07802 3.33574 3.39073 3.39357 3.51275 4.05699 4.42264 4.54938 4.61936 4.72650 4.81389 4.90119 4.92546 4.98765 5.07180 5.21154 5.33112 5.34399 5.36006 5.38279 5.49456 5.72539 5.81802 5.88855 5.90948 5.98731 6.04052 6.12816 6.14824 6.18709 6.26017 6.33985 6.38897 6.47150 6.52799 6.59178 6.80221 6.89977 6.94252 7.13568 7.25261 7.52890 7.70905 7.90415 8.40957 8.53423 9.13772 9.72724 10.33301 11.21265 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.003371 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.229904 B = 8304.654999 C = 9036.520103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.161 3.839 4 C -0.228 4.228 5 C -0.039 4.039 6 C -0.144 4.144 7 C 0.560 3.440 8 O -0.553 6.553 9 N -0.587 5.587 10 C 0.095 3.905 11 C 0.132 3.868 12 N -0.591 5.591 13 C -0.259 4.259 14 H 0.065 0.935 15 C 0.010 3.990 16 N -0.904 5.904 17 Si 0.907 3.093 18 H -0.282 1.282 19 H -0.290 1.290 20 H -0.281 1.281 21 C 0.160 3.840 22 C 0.071 3.929 23 C 0.017 3.983 24 C -0.103 4.103 25 C -0.102 4.102 26 C -0.128 4.128 27 C -0.086 4.086 28 C -0.072 4.072 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.023 0.977 37 H 0.067 0.933 38 H 0.256 0.744 39 H 0.101 0.899 40 H 0.023 0.977 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.135 0.865 44 H 0.125 0.875 45 H 0.124 0.876 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 -13.003 -12.276 18.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.114 3.886 4 C -0.247 4.247 5 C -0.058 4.058 6 C -0.147 4.147 7 C 0.349 3.651 8 O -0.434 6.434 9 N -0.318 5.318 10 C -0.028 4.028 11 C 0.005 3.995 12 N -0.314 5.314 13 C -0.388 4.388 14 H 0.082 0.918 15 C -0.190 4.190 16 N -0.548 5.548 17 Si 0.736 3.264 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.208 1.208 21 C 0.034 3.966 22 C -0.053 4.053 23 C 0.016 3.984 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.146 4.146 27 C -0.104 4.104 28 C -0.072 4.072 29 H 0.077 0.923 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.041 0.959 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.041 0.959 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.153 0.847 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.445 -13.095 -12.515 18.438 hybrid contribution -0.713 0.737 0.877 1.349 sum -4.158 -12.358 -11.638 17.477 Atomic orbital electron populations 1.23140 0.77868 1.04129 1.01877 1.85943 1.21777 1.26916 1.87599 1.19041 0.91111 0.84390 0.94032 1.20823 1.00151 0.91690 1.12048 1.20958 0.93106 0.97252 0.94502 1.20772 0.93476 0.92463 1.08004 1.17980 0.81730 0.83881 0.81542 1.90745 1.36114 1.79111 1.37388 1.48025 1.38993 1.16418 1.28363 1.22256 0.97135 0.83263 1.00186 1.21318 0.91319 0.99304 0.87582 1.43906 1.39915 1.15984 1.31604 1.19134 1.42204 0.88680 0.88812 0.91780 1.25288 1.00572 0.96144 0.96950 1.69906 1.51138 1.13101 1.20642 0.86321 0.78754 0.80458 0.80877 1.20865 1.21543 1.20761 1.21178 0.97189 0.87120 0.91139 1.22924 0.90360 1.00312 0.91710 1.18470 0.93155 0.90015 0.96767 1.21067 0.92260 0.99696 0.99034 1.20959 1.00290 0.92209 0.98561 1.20833 0.94655 0.97728 1.01391 1.20897 0.93710 0.97353 0.98466 1.17274 0.89884 0.93586 1.06489 0.92328 0.88061 0.92078 0.84936 0.84954 0.89940 0.91860 0.95877 0.91461 0.93348 0.88106 0.95905 0.91835 0.90396 0.84676 0.85656 0.85800 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.79 101.05 0.99 1.16 16 2 O -0.31 -3.38 9.67 -18.32 -0.18 -3.55 16 3 C 0.16 2.07 6.70 -38.61 -0.26 1.81 16 4 C -0.23 -2.75 8.95 -39.63 -0.35 -3.11 16 5 C -0.04 -0.55 7.41 -39.19 -0.29 -0.84 16 6 C -0.14 -2.38 5.03 -102.78 -0.52 -2.90 16 7 C 0.56 10.49 6.50 -12.66 -0.08 10.41 16 8 O -0.55 -11.52 15.37 5.24 0.08 -11.44 16 9 N -0.59 -11.04 2.95 -173.87 -0.51 -11.55 16 10 C 0.10 1.78 6.58 -3.60 -0.02 1.76 16 11 C 0.13 2.79 6.67 -3.60 -0.02 2.76 16 12 N -0.59 -14.50 2.95 -172.04 -0.51 -15.01 16 13 C -0.26 -6.87 9.55 -15.06 -0.14 -7.01 16 14 H 0.06 1.66 7.83 -52.48 -0.41 1.25 16 15 C 0.01 0.26 5.14 -17.43 -0.09 0.17 16 16 N -0.90 -25.41 10.99 55.49 0.61 -24.80 16 17 Si 0.91 21.03 29.56 -169.99 -5.02 16.00 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 C 0.16 3.71 5.43 -3.60 -0.02 3.69 16 22 C 0.07 1.32 5.77 -3.60 -0.02 1.30 16 23 C 0.02 0.27 5.90 -104.80 -0.62 -0.35 16 24 C -0.10 -1.59 9.30 -39.61 -0.37 -1.96 16 25 C -0.10 -1.30 9.96 -39.90 -0.40 -1.69 16 26 C -0.13 -1.46 9.95 -39.94 -0.40 -1.86 16 27 C -0.09 -1.06 9.56 -39.50 -0.38 -1.44 16 28 C -0.07 -1.03 5.75 -106.77 -0.61 -1.64 16 29 H 0.06 0.34 7.63 -51.93 -0.40 -0.05 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.39 7.63 -51.93 -0.40 -0.01 16 32 H 0.13 1.20 6.14 -52.49 -0.32 0.88 16 33 H 0.13 1.65 7.43 -52.49 -0.39 1.26 16 34 H 0.08 1.50 7.01 -51.92 -0.36 1.13 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 1.35 7.93 -51.93 -0.41 0.94 16 38 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 39 H 0.10 2.56 6.11 -51.93 -0.32 2.25 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 42 H 0.08 1.31 4.71 -51.93 -0.24 1.06 16 43 H 0.14 2.26 6.62 -52.48 -0.35 1.91 16 44 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 45 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 46 H 0.13 1.37 7.60 -52.48 -0.40 0.97 16 LS Contribution 368.54 15.07 5.55 5.55 Total: -1.00 -31.93 368.54 -9.68 -41.61 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.09 Total: 2.94 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -3.61 Total: 0.25 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.41 Total: -51.36 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.10 Total: -14.99 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.93 -9.68 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152714037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.786 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds