Wall clock time and date at job start Sat Apr 11 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35540 * 117.00056 * 2 1 4 4 C 1.37921 * 119.79021 * 359.97438 * 3 2 1 5 5 C 1.38413 * 121.62106 * 179.81202 * 4 3 2 6 6 C 1.39108 * 120.67858 * 0.44714 * 5 4 3 7 7 C 1.47120 * 120.56228 * 179.81209 * 6 5 4 8 8 O 1.21642 * 119.99883 * 235.10153 * 7 6 5 9 9 N 1.34771 * 120.00038 * 55.10209 * 7 6 5 10 10 C 1.46967 * 120.59768 * 175.99339 * 9 7 6 11 11 C 1.53363 * 108.63891 * 235.20876 * 10 9 7 12 12 N 1.46962 * 108.63373 * 310.57598 * 11 10 9 13 13 C 1.36947 * 120.59127 * 235.22544 * 12 11 10 14 14 H 1.08003 * 119.99911 * 34.79614 * 13 12 11 15 15 C 1.38811 * 119.99871 * 214.79050 * 13 12 11 16 16 N 1.31618 * 120.00117 * 5.48098 * 15 13 12 17 17 Si 1.86804 * 119.99972 * 185.47512 * 15 13 12 18 18 H 1.48499 * 109.47013 * 60.00094 * 17 15 13 19 19 H 1.48493 * 109.47301 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.46808 * 300.00463 * 17 15 13 21 21 C 1.46958 * 118.81613 * 55.22436 * 12 11 10 22 22 C 1.46965 * 120.59683 * 355.97393 * 9 7 6 23 23 C 1.46201 * 118.87146 * 359.53870 * 6 5 4 24 24 C 1.39997 * 121.41511 * 180.27892 * 23 6 5 25 25 C 1.36341 * 119.62713 * 179.97438 * 24 23 6 26 26 C 1.39223 * 120.88246 * 0.02562 * 25 24 23 27 27 C 1.36230 * 120.96481 * 359.95518 * 26 25 24 28 28 C 1.40374 * 119.64766 * 0.03814 * 27 26 25 29 29 H 1.09005 * 109.46816 * 60.00004 * 1 2 3 30 30 H 1.08997 * 109.47392 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47299 * 300.00355 * 1 2 3 32 32 H 1.07992 * 119.18739 * 0.04757 * 4 3 2 33 33 H 1.07998 * 119.65835 * 180.23248 * 5 4 3 34 34 H 1.09010 * 109.60391 * 354.95291 * 10 9 7 35 35 H 1.09000 * 109.61038 * 115.46078 * 10 9 7 36 36 H 1.09005 * 109.61135 * 70.31748 * 11 10 9 37 37 H 1.09000 * 109.61124 * 190.83037 * 11 10 9 38 38 H 0.97001 * 120.00234 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.61083 * 185.02752 * 21 12 11 40 40 H 1.09000 * 109.74947 * 64.60220 * 21 12 11 41 41 H 1.08992 * 109.61259 * 244.53775 * 22 9 7 42 42 H 1.09000 * 109.60846 * 5.05430 * 22 9 7 43 43 H 1.08003 * 120.18445 * 0.02562 * 24 23 6 44 44 H 1.08003 * 119.56062 * 180.02562 * 25 24 23 45 45 H 1.08005 * 119.51608 * 179.97438 * 26 25 24 46 46 H 1.08004 * 120.17564 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 1.2890 2.3616 -0.0005 5 6 1.8776 3.6143 0.0033 6 6 3.2623 3.7479 -0.0015 7 6 3.8852 5.0807 -0.0015 8 8 4.6857 5.3779 -0.8679 9 7 3.5691 5.9723 0.9584 10 6 4.2474 7.2745 1.0225 11 6 4.8564 7.4417 2.4201 12 7 3.8268 7.1294 3.4212 13 6 3.5053 8.0356 4.3964 14 1 3.5237 9.0932 4.1780 15 6 3.1558 7.5949 5.6654 16 7 3.2371 6.3154 5.9633 17 14 2.5701 8.8177 6.9504 18 1 1.3480 9.5041 6.4598 19 1 2.2618 8.0994 8.2130 20 1 3.6354 9.8218 7.2000 21 6 3.1485 5.8273 3.3573 22 6 2.5396 5.6601 1.9596 23 6 4.0879 2.5413 -0.0003 24 6 5.4860 2.6138 0.0009 25 6 6.2204 1.4651 0.0025 26 6 5.5987 0.2194 0.0024 27 6 4.2405 0.1139 0.0016 28 6 3.4537 1.2764 0.0001 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2117 2.2859 -0.0002 33 1 1.2555 4.4971 0.0066 34 1 5.0374 7.3127 0.2723 35 1 3.5270 8.0717 0.8396 36 1 5.6985 6.7594 2.5363 37 1 5.1943 8.4696 2.5513 38 1 2.9932 6.0075 6.8502 39 1 2.3586 5.7890 4.1075 40 1 3.8668 5.0284 3.5413 41 1 1.6975 6.3423 1.8434 42 1 2.2016 4.6322 1.8285 43 1 5.9799 3.5742 0.0014 44 1 7.2989 1.5222 0.0038 45 1 6.2020 -0.6764 0.0032 46 1 3.7715 -0.8590 0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152714037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:53 Heat of formation + Delta-G solvation = -5.736021 kcal Electronic energy + Delta-G solvation = -29851.717818 eV Core-core repulsion = 25899.982652 eV Total energy + Delta-G solvation = -3951.735166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.95983 -40.82761 -39.50318 -38.38698 -36.89841 -35.56311 -33.46442 -32.92721 -31.91967 -31.50533 -30.11165 -28.73977 -28.18480 -25.80499 -24.63352 -24.50823 -23.88538 -23.48151 -21.91294 -20.33482 -19.33173 -18.97642 -18.33559 -18.04628 -17.43098 -17.21889 -16.78540 -16.65212 -16.17488 -16.05515 -15.57130 -15.45929 -15.24683 -15.12546 -15.05380 -14.76507 -14.39250 -14.29161 -13.98690 -13.73286 -13.62029 -13.38476 -13.10574 -12.71800 -12.70473 -12.59867 -12.50808 -12.29881 -12.22893 -12.12043 -12.01271 -11.78456 -11.71303 -11.67845 -10.91242 -10.59035 -10.46558 -9.87137 -9.73975 -8.62792 -8.54593 -7.88198 -5.46979 -0.64481 -0.05263 0.78340 1.49493 1.50402 1.55017 1.57703 1.86318 2.12189 2.17038 2.50302 3.00262 3.28337 3.45108 3.58451 3.61286 3.71459 3.91943 3.94873 4.07888 4.21978 4.22289 4.30529 4.37317 4.41400 4.43958 4.44660 4.52240 4.55714 4.60602 4.72400 4.78682 4.79355 4.81016 4.92281 5.04177 5.05289 5.13870 5.20463 5.24198 5.36186 5.49234 5.52319 5.58771 5.61850 5.64200 5.92337 6.27705 6.38814 6.40998 7.07099 7.11938 7.75726 8.33250 9.16137 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.003371 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.229904 B = 8304.654999 C = 9036.520103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.315 6.315 3 C 0.171 3.829 4 C -0.233 4.233 5 C -0.028 4.028 6 C -0.188 4.188 7 C 0.564 3.436 8 O -0.581 6.581 9 N -0.593 5.593 10 C 0.105 3.895 11 C 0.133 3.867 12 N -0.608 5.608 13 C -0.271 4.271 14 H 0.069 0.931 15 C -0.040 4.040 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.273 1.273 19 H -0.294 1.294 20 H -0.278 1.278 21 C 0.169 3.831 22 C 0.090 3.910 23 C 0.000 4.000 24 C -0.141 4.141 25 C -0.093 4.093 26 C -0.128 4.128 27 C -0.084 4.084 28 C -0.095 4.095 29 H 0.072 0.928 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.167 0.833 33 H 0.146 0.854 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.006 0.994 37 H 0.077 0.923 38 H 0.253 0.747 39 H 0.077 0.923 40 H -0.010 1.010 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.109 0.891 44 H 0.147 0.853 45 H 0.161 0.839 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 -14.488 -12.920 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.227 6.227 3 C 0.124 3.876 4 C -0.252 4.252 5 C -0.047 4.047 6 C -0.191 4.191 7 C 0.355 3.645 8 O -0.463 6.463 9 N -0.323 5.323 10 C -0.019 4.019 11 C 0.007 3.993 12 N -0.331 5.331 13 C -0.401 4.401 14 H 0.087 0.913 15 C -0.236 4.236 16 N -0.580 5.580 17 Si 0.800 3.200 18 H -0.198 1.198 19 H -0.220 1.220 20 H -0.204 1.204 21 C 0.043 3.957 22 C -0.033 4.033 23 C -0.001 4.001 24 C -0.159 4.159 25 C -0.111 4.111 26 C -0.145 4.145 27 C -0.101 4.101 28 C -0.095 4.095 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.164 0.836 34 H 0.105 0.895 35 H 0.094 0.906 36 H 0.024 0.976 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.008 0.992 41 H 0.094 0.906 42 H 0.116 0.884 43 H 0.127 0.873 44 H 0.165 0.835 45 H 0.178 0.822 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.194 -14.580 -13.184 20.332 hybrid contribution -0.158 1.040 1.042 1.480 sum -5.352 -13.541 -12.143 18.959 Atomic orbital electron populations 1.23518 0.75529 1.06228 1.02872 1.85946 1.24104 1.25783 1.86846 1.19137 0.90826 0.85441 0.92217 1.21112 1.01801 0.90593 1.11677 1.21190 0.92077 0.98734 0.92671 1.20676 0.94767 0.91309 1.12345 1.18340 0.80988 0.84475 0.80725 1.90706 1.37406 1.79739 1.38498 1.48067 1.39195 1.16571 1.28511 1.22098 0.97521 0.83903 0.98367 1.21371 0.90340 0.99340 0.88282 1.44157 1.40989 1.15976 1.32022 1.19478 1.41789 0.89311 0.89482 0.91322 1.26027 1.01092 0.97680 0.98797 1.70086 1.52344 1.14812 1.20731 0.85283 0.78469 0.78231 0.78033 1.19835 1.21992 1.20379 1.20943 0.95636 0.85793 0.93331 1.22665 0.90043 1.01897 0.88735 1.18637 0.93386 0.90759 0.97317 1.21014 0.92780 0.99710 1.02376 1.21290 1.01400 0.91959 0.96446 1.21216 0.94832 0.98286 1.00207 1.21248 0.94122 0.97613 0.97142 1.17542 0.91163 0.93492 1.07341 0.90986 0.85581 0.91333 0.81571 0.83616 0.89500 0.90609 0.97624 0.90492 0.93822 0.90444 0.99188 0.90550 0.88438 0.87311 0.83497 0.82169 0.82789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.79 113.37 1.11 1.23 16 2 O -0.31 -5.89 9.67 -88.45 -0.86 -6.75 16 3 C 0.17 4.06 6.70 22.90 0.15 4.21 16 4 C -0.23 -5.10 8.95 22.24 0.20 -4.90 16 5 C -0.03 -0.75 7.41 22.52 0.17 -0.58 16 6 C -0.19 -6.34 5.03 -18.67 -0.09 -6.43 16 7 C 0.56 21.81 6.50 86.58 0.56 22.37 16 8 O -0.58 -25.25 15.37 -4.16 -0.06 -25.31 16 9 N -0.59 -22.68 2.95 -822.24 -2.42 -25.11 16 10 C 0.10 3.97 6.58 86.41 0.57 4.54 16 11 C 0.13 5.77 6.67 86.41 0.58 6.35 16 12 N -0.61 -30.52 2.95 -698.22 -2.06 -32.58 16 13 C -0.27 -14.52 9.55 84.03 0.80 -13.72 16 14 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 15 C -0.04 -2.16 5.14 84.86 0.44 -1.73 16 16 N -0.93 -53.85 10.99 21.65 0.24 -53.61 16 17 Si 0.97 43.41 29.56 68.60 2.03 45.44 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 21 C 0.17 8.12 5.43 86.42 0.47 8.59 16 22 C 0.09 3.38 5.77 86.42 0.50 3.88 16 23 C 0.00 -0.01 5.90 -19.98 -0.12 -0.12 16 24 C -0.14 -4.59 9.30 22.25 0.21 -4.38 16 25 C -0.09 -2.33 9.96 22.06 0.22 -2.11 16 26 C -0.13 -2.65 9.95 22.04 0.22 -2.43 16 27 C -0.08 -1.89 9.56 22.32 0.21 -1.68 16 28 C -0.09 -2.63 5.75 -21.25 -0.12 -2.75 16 29 H 0.07 0.57 7.63 -2.38 -0.02 0.55 16 30 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.62 7.63 -2.39 -0.02 0.60 16 32 H 0.17 2.40 6.14 -2.91 -0.02 2.38 16 33 H 0.15 3.38 7.43 -2.91 -0.02 3.35 16 34 H 0.09 3.22 7.01 -2.38 -0.02 3.20 16 35 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 37 H 0.08 3.13 7.93 -2.39 -0.02 3.11 16 38 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 39 H 0.08 4.07 6.11 -2.39 -0.01 4.06 16 40 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 42 H 0.10 3.26 4.71 -2.39 -0.01 3.25 16 43 H 0.11 4.00 6.62 -2.91 -0.02 3.98 16 44 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 45 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 46 H 0.15 2.72 7.60 -2.91 -0.02 2.69 16 Total: -1.00 -71.77 368.54 3.94 -67.83 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 1.00 Total: 19.75 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 6.07 Total: 10.33 kcal Atomic # 7 Polarization: -107.05 SS G_CDS: -4.25 Total: -111.30 kcal Atomic # 8 Polarization: -31.14 SS G_CDS: -0.92 Total: -32.06 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -71.77 3.94 -67.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152714037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.098 kcal (2) G-P(sol) polarization free energy of solvation -71.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds